Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	L	P	H	L	S	L	A	D	A	R	N	L	H	L	A	A	Q	G	L	L	N	K	P	R	R	R	A	S	L	E	D	I	P	A	T	I	S	R	M	S	L	L	Q	I	D	T	I	N	I	V	A	R	S	P	Y	L	V	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																	?		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	S	R	L	G	N	Y	P	A	Q	W	L	D	E	S	L	A	R	G	E	L	M	E	Y	W	A	H	E	A	C	F	M	P	R	S	D	F	R	L	I	R	H	R	M	L	A	P	E	K	M	G	W	K	Y	K	D	A	W	M	Q
Secondary structure
SS confidence
Disorder																																																	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	H	E	A	E	I	A	Q	L	I	Q	H	I	H	D	K	G	P	V	R	S	A	D	F	E	H	P	R	K	G	A	S	G	W	W	E	W	K	P	H	K	R	H	L	E	G	L	F	T	A	G	K	V	M	V	I	E	R	R	N
Secondary structure
SS confidence
Disorder																									?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	Q	R	V	Y	D	L	T	H	R	V	M	P	D	W	D	D	E	R	D	L	V	S	Q	T	E	A	E	I	I	M	L	D	N	S	A	R	S	L	G	I	F	R	E	Q	W	L	A	D	Y	Y	R	L	K	R	P	A	L	A	A
Secondary structure
SS confidence
Disorder																		?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		W	R	E	A	R	A	E	Q	Q	Q	I	I	A	V	H	V	E	K	L	G	N	L	W	L	H	D	D	L	L	P	L	L	E	R	A	L	A	G	K	L	T	A	T	H	S	A	V	L	S	P	F	D	P	V	V	W	D	R	K	R
Secondary structure
SS confidence
Disorder																																			?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	E	Q	L	F	D	F	S	Y	R	L	E	C	Y	T	P	A	P	K	R	Q	Y	G	Y	F	V	L	P	L	L	H	R	G	Q	L	V	G	R	M	D	A	K	M	H	R	Q	T	G	I	L	E	V	I	S	L	W	L	Q	E	G
Secondary structure
SS confidence
Disorder																																															?	?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Sequence		I	K	P	T	T	T	L	Q	K	G	L	R	Q	A	I	T	D	F	A	N	W	Q	Q	A	T	R	V	T	L	G	C	C	P	Q	G	L	F	T	D	C	R	T	G	W	E	I	D	P	V	A
Secondary structure
SS confidence
Disorder				?																																											?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1z05 chain A domain 1 Region: 206 - 254 Aligned: 49 Modelled: 49 Confidence: 92.3% Identity: 8% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: ROK associated domain Phyre2 PDB 1z6r chain A domain 1 Region: 206 - 256 Aligned: 51 Modelled: 51 Confidence: 92.0% Identity: 10% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: ROK associated domain Phyre2 PDB 1z6r chain C Region: 209 - 253 Aligned: 45 Modelled: 45 Confidence: 88.6% Identity: 11% PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli Phyre2 PDB 1z05 chain A Region: 209 - 254 Aligned: 46 Modelled: 46 Confidence: 86.9% Identity: 9% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Phyre2 PDB 2z99 chain A Region: 128 - 192 Aligned: 57 Modelled: 65 Confidence: 83.4% Identity: 12% PDB header:cell cycle Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of scpb from mycobacterium tuberculosis Phyre2 PDB 1t6s chain A domain 2 Region: 128 - 192 Aligned: 57 Modelled: 65 Confidence: 82.6% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: ScpB/YpuH-like Phyre2 PDB 1sfx chain A Region: 207 - 264 Aligned: 58 Modelled: 58 Confidence: 79.5% Identity: 12% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: TrmB-like Phyre2 PDB 3eyy chain A Region: 128 - 189 Aligned: 62 Modelled: 62 Confidence: 75.3% Identity: 15% PDB header:transport Chain: A: PDB Molecule:putative iron uptake regulatory protein; PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition Phyre2 PDB 2fu4 chain B Region: 128 - 188 Aligned: 61 Modelled: 61 Confidence: 74.7% Identity: 16% PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator) Phyre2 PDB 2v9v chain A Region: 209 - 263 Aligned: 55 Modelled: 55 Confidence: 71.0% Identity: 15% PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) Phyre2 PDB 3eqx chain B Region: 212 - 274 Aligned: 62 Modelled: 60 Confidence: 70.4% Identity: 16% PDB header:dna binding protein Chain: B: PDB Molecule:fic domain containing transcriptional regulator; PDBTitle: crystal structure of a fic family protein (so_4266) from shewanella2 oneidensis at 1.6 a resolution Phyre2 PDB 1t6s chain B Region: 124 - 192 Aligned: 61 Modelled: 69 Confidence: 67.7% Identity: 16% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a conserved hypothetical protein from chlorobium2 tepidum Phyre2 PDB 2quf chain B Region: 127 - 258 Aligned: 126 Modelled: 132 Confidence: 66.3% Identity: 14% PDB header:transcription Chain: B: PDB Molecule:transcription factor pf0095; PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus Phyre2 PDB 2nyx chain B Region: 209 - 264 Aligned: 56 Modelled: 56 Confidence: 60.8% Identity: 11% PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis Phyre2 PDB 3cjn chain A Region: 207 - 258 Aligned: 52 Modelled: 52 Confidence: 60.1% Identity: 4% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi Phyre2 PDB 2k4b chain A Region: 128 - 185 Aligned: 56 Modelled: 58 Confidence: 59.5% Identity: 18% PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: copr repressor structure Phyre2 PDB 2fbi chain A domain 1 Region: 209 - 258 Aligned: 50 Modelled: 50 Confidence: 59.2% Identity: 14% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 PDB 3f6v chain A Region: 128 - 192 Aligned: 58 Modelled: 65 Confidence: 58.1% Identity: 21% PDB header:transcription regulator Chain: A: PDB Molecule:possible transcriptional regulator, arsr family PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance Phyre2 PDB 3mwm chain A Region: 128 - 187 Aligned: 60 Modelled: 60 Confidence: 54.2% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur Phyre2 PDB 2xig chain A Region: 128 - 187 Aligned: 60 Modelled: 60 Confidence: 54.1% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites Phyre2 1 d1z05a1 2 d1z6ra1 3 c1z6rC_ 4 c1z05A_ 5 c2z99A_ 6 d1t6sa2 7 d1sfxa_ 8 c3eyyA_ 9 c2fu4B_ 10 c2v9vA_ 11 c3eqxB_ 12 c1t6sB_ 13 c2qufB_ 14 c2nyxB_ 15 c3cjnA_ 16 c2k4bA_ 17 d2fbia1 18 c3f6vA_ 19 c3mwmA_ 20 c2xigA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1z05a1 92.3 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 2 d1z6ra1 92.0 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 3 c1z6rC_ 88.6 11 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 4 c1z05A_ 86.9 9 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 5 c2z99A_ 83.4 12 PDB header:cell cycle Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of scpb from mycobacterium tuberculosis 6 d1t6sa2 82.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ScpB/YpuH-like 7 d1sfxa_ 79.5 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 8 c3eyyA_ 75.3 15 PDB header:transport Chain: A: PDB Molecule:putative iron uptake regulatory protein; PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition 9 c2fu4B_ 74.7 16 PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator) 10 c2v9vA_ 71.0 15 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 11 c3eqxB_ 70.4 16 PDB header:dna binding protein Chain: B: PDB Molecule:fic domain containing transcriptional regulator; PDBTitle: crystal structure of a fic family protein (so_4266) from shewanella2 oneidensis at 1.6 a resolution 12 c1t6sB_ 67.7 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a conserved hypothetical protein from chlorobium2 tepidum 13 c2qufB_ 66.3 14 PDB header:transcription Chain: B: PDB Molecule:transcription factor pf0095; PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus 14 c2nyxB_ 60.8 11 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis 15 c3cjnA_ 60.1 4 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi 16 c2k4bA_ 59.5 18 PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: copr repressor structure 17 d2fbia1 59.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 18 c3f6vA_ 58.1 21 PDB header:transcription regulator Chain: A: PDB Molecule:possible transcriptional regulator, arsr family PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance 19 c3mwmA_ 54.2 17 PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur 20 c2xigA_ 54.1 13 PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites 21 c2o03A_ not modelled 53.6 10 PDB header:gene regulation Chain: A: PDB Molecule:probable zinc uptake regulation protein furb; PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator 22 d1mzba_ not modelled 51.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FUR-like 23 c3g3zA_ not modelled 49.8 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis 24 c1u5tA_ not modelled 49.2 18 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 25 d1lnwa_ not modelled 48.6 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 26 c3bpxB_ not modelled 48.3 10 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of marr 27 d2g9wa1 not modelled 47.9 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 28 d1lj9a_ not modelled 47.5 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 29 d1lvaa3 not modelled 47.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 30 c1r22B_ not modelled 46.7 16 PDB header:transcription repressor Chain: B: PDB Molecule:transcriptional repressor smtb; PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form 31 c2w57A_ not modelled 45.1 12 PDB header:metal transport Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains 32 d2bv6a1 not modelled 44.2 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 33 c2hoeA_ not modelled 43.2 10 PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution 34 d2a61a1 not modelled 43.1 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 35 c3hhhA_ not modelled 42.6 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, padr family; PDBTitle: crystal structure of transcriptional regulator, a member of padr2 family, from enterococcus faecalis v583 36 c2aj6A_ not modelled 41.7 14 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein mw0638; PDBTitle: crystal structure of a putative gnat family acetyltransferase (mw0638)2 from staphylococcus aureus subsp. aureus at 1.63 a resolution 37 d2etha1 not modelled 41.6 3 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 38 d1okra_ not modelled 41.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 39 c2plyB_ not modelled 41.4 9 PDB header:translation/rna Chain: B: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna. 40 c2fe3B_ not modelled 39.9 10 PDB header:dna binding protein Chain: B: PDB Molecule:peroxide operon regulator; PDBTitle: the crystal structure of bacillus subtilis perr-zn reveals a novel2 zn(cys)4 structural redox switch 41 c3iz6V_ not modelled 39.7 13 PDB header:ribosome Chain: V: PDB Molecule:40s ribosomal protein s25 (s25e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 42 d1s3ja_ not modelled 39.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 43 c3hrmA_ not modelled 39.3 7 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator sarz; PDBTitle: crystal structure of staphylococcus aureus protein sarz in sulfenic2 acid form 44 d1p6ra_ not modelled 39.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 45 c3nrvC_ not modelled 39.1 14 PDB header:transcription regulator Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family); PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1 46 c3e6mD_ not modelled 39.0 10 PDB header:transcription regulator Chain: D: PDB Molecule:marr family transcriptional regulator; PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss. 47 c3k0lA_ not modelled 37.1 8 PDB header:transcription regulator Chain: A: PDB Molecule:repressor protein; PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp 48 d1ub9a_ not modelled 37.1 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 49 c2fa5B_ not modelled 35.7 9 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator marr/emrr family; PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris 50 c3bj6B_ not modelled 35.1 7 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 51 d1i5za1 not modelled 34.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 52 d1ulya_ not modelled 34.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein PH1932 53 c3pqkD_ not modelled 34.0 24 PDB header:transcription Chain: D: PDB Molecule:biofilm growth-associated repressor; PDBTitle: crystal structure of the transcriptional repressor bigr from xylella2 fastidiosa 54 d2i6ca1 not modelled 33.8 8 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 55 d1g3wa1 not modelled 33.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 56 d2isya1 not modelled 33.6 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 57 c3cdhB_ not modelled 33.5 4 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3 58 c2nnnB_ not modelled 33.2 8 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa 59 d1ku9a_ not modelled 32.4 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:DNA-binding protein Mj223 60 d3bz6a2 not modelled 32.4 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PSPTO2686-like 61 c2rdpA_ not modelled 32.4 10 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator marr; PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus 62 d1xd7a_ not modelled 32.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 63 c3bwgA_ not modelled 30.6 11 PDB header:transcription regulator Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk; PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168 64 d1fp1d1 not modelled 30.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain 65 c2pjpA_ not modelled 30.5 15 PDB header:translation/rna Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna 66 c3bjaA_ not modelled 30.4 4 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution 67 d1sd4a_ not modelled 29.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 68 c2zmeA_ not modelled 29.2 19 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 69 c2zkzC_ not modelled 28.2 5 PDB header:transcription Chain: C: PDB Molecule:transcriptional repressor pagr; PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis 70 c3cuqA_ not modelled 28.2 19 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 71 c2huzB_ not modelled 27.8 19 PDB header:structural genomics, transferase Chain: B: PDB Molecule:glucosamine 6-phosphate n-acetyltransferase; PDBTitle: crystal structure of gnpnat1 72 d1n71a_ not modelled 27.7 13 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 73 d1wi9a_ not modelled 27.3 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 74 d2ev0a1 not modelled 27.2 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 75 c3kfwX_ not modelled 27.2 8 PDB header:structural genomics, unknown function Chain: X: PDB Molecule:uncharacterized protein; PDBTitle: uncharacterized protein rv0674 from mycobacterium tuberculosis 76 c3edpB_ not modelled 27.0 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lin2111 protein; PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262 77 c2ev5B_ not modelled 26.5 10 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator mntr; PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium 78 d2d1ha1 not modelled 25.3 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 79 d1se9a_ not modelled 25.1 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 80 c1se9A_ not modelled 25.1 13 PDB header:plant protein Chain: A: PDB Molecule:ubiquitin family; PDBTitle: structure of at3g01050, a ubiquitin-fold protein from2 arabidopsis thaliana 81 c3bz6A_ not modelled 25.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0502 protein pspto_2686; PDBTitle: crystal structure of a conserved protein of unknown function from2 pseudomonas syringae pv. tomato str. dc3000 82 d2aj6a1 not modelled 24.6 14 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 83 d2oz6a1 not modelled 24.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 84 c2oqgA_ not modelled 24.4 11 PDB header:transcription Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein; PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1 85 c3izbV_ not modelled 23.9 15 PDB header:ribosome Chain: V: PDB Molecule:40s ribosomal protein rps25 (s25e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 86 c3f6oB_ not modelled 23.8 14 PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566 87 d1z91a1 not modelled 23.8 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 88 c3bddD_ not modelled 22.8 9 PDB header:transcription Chain: D: PDB Molecule:regulatory protein marr; PDBTitle: crystal structure of a putative multiple antibiotic-resistance2 repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a3 resolution 89 d3e5ua1 not modelled 22.5 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 90 d1qbjc_ not modelled 21.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 91 c3cuoB_ not modelled 21.8 8 PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav; PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli 92 c2h09A_ not modelled 21.7 18 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator mntr; PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli 93 d1kyza1 not modelled 21.0 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain 94 c2wpwA_ not modelled 20.8 16 PDB header:transferase Chain: A: PDB Molecule:orf14; PDBTitle: tandem gnat protein from the clavulanic acid biosynthesis2 pathway (without accoa) 95 d2gaua1 not modelled 19.8 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 96 c2jscB_ not modelled 19.8 11 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator rv1994c/mt2050; PDBTitle: nmr structure of the cadmium metal-sensor cmtr from mycobacterium2 tuberculosis 97 d2gxba1 not modelled 19.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 98 d1qgpa_ not modelled 19.7 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 99 d1mkma1 not modelled 19.6 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0