Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	V	S	L	E	K	N	D	H	L	M	L	A	R	Q	L	P	L	K	S	V	A	L	I	L	A	G	G	R	G	T	R	L	K	D	L	T	N	K	R	A	K	P	A	V	H	F	G	G	K	F	R	I	I	D	F	A	L	S	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		C	I	N	S	G	I	R	R	M	G	V	I	T	Q	Y	Q	S	H	T	L	V	Q	H	I	Q	R	G	W	S	F	F	N	E	E	M	N	E	F	V	D	L	L	P	A	Q	Q	R	M	K	G	E	N	W	Y	R	G	T	A	D	A
Secondary structure
SS confidence
Disorder																													?	?	?		?	?	?													?	?	?		?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	T	Q	N	L	D	I	I	R	R	Y	K	A	E	Y	V	V	I	L	A	G	D	H	I	Y	K	Q	D	Y	S	R	M	L	I	D	H	V	E	K	G	A	R	C	T	V	A	C	M	P	V	P	I	E	E	A	S	A	F	G	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		M	A	V	D	E	N	D	K	I	I	E	F	V	E	K	P	A	N	P	P	S	M	P	N	D	P	S	K	S	L	A	S	M	G	I	Y	V	F	D	A	D	Y	L	Y	E	L	L	E	E	D	D	R	D	E	N	S	S	H	D	F
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?	?																							?			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	K	D	L	I	P	K	I	T	E	A	G	L	A	Y	A	H	P	F	P	L	S	C	V	Q	S	D	P	D	A	E	P	Y	W	R	D	V	G	T	L	E	A	Y	W	K	A	N	L	D	L	A	S	V	V	P	E	L	D	M	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	R	N	W	P	I	R	T	Y	N	E	S	L	P	P	A	K	F	V	Q	D	R	S	G	S	H	G	M	T	L	N	S	L	V	S	G	G	C	V	I	S	G	S	V	V	V	Q	S	V	L	F	S	R	V	R	V	N	S	F	C
Secondary structure
SS confidence
Disorder									?														?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		N	I	D	S	A	V	L	L	P	E	V	W	V	G	R	S	C	R	L	R	R	C	V	I	D	R	A	C	V	I	P	E	G	M	V	I	G	E	N	A	E	E	D	A	R	R	F	Y	R	S	E	E	G	I	V	L	V	T	R	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.
Sequence		M	L	R	K	L	G	H	K	Q	E	R
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3brk chain X Region: 14 - 425 Aligned: 394 Modelled: 403 Confidence: 100.0% Identity: 56% PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens Phyre2 PDB 1yp3 chain C Region: 19 - 426 Aligned: 383 Modelled: 405 Confidence: 100.0% Identity: 39% PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp Phyre2 PDB 3d98 chain A Region: 15 - 404 Aligned: 361 Modelled: 388 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form Phyre2 PDB 2qkx chain A Region: 15 - 406 Aligned: 360 Modelled: 380 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate Phyre2 PDB 1hm8 chain A Region: 21 - 431 Aligned: 370 Modelled: 382 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a Phyre2 PDB 2v0h chain A Region: 17 - 400 Aligned: 351 Modelled: 359 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu) Phyre2 PDB 2oi6 chain A Region: 19 - 428 Aligned: 366 Modelled: 393 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4 Phyre2 PDB 1fwy chain A Region: 17 - 392 Aligned: 321 Modelled: 344 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac Phyre2 PDB 2ggq chain A Region: 18 - 405 Aligned: 333 Modelled: 349 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii Phyre2 PDB 1yp2 chain A domain 2 Region: 22 - 311 Aligned: 270 Modelled: 287 Confidence: 100.0% Identity: 41% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 1lvw chain A Region: 18 - 291 Aligned: 238 Modelled: 261 Confidence: 100.0% Identity: 22% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 1fxo chain A Region: 19 - 291 Aligned: 238 Modelled: 254 Confidence: 100.0% Identity: 23% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 2ux8 chain G Region: 17 - 297 Aligned: 259 Modelled: 278 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate. Phyre2 PDB 1h5r chain A Region: 17 - 292 Aligned: 240 Modelled: 262 Confidence: 100.0% Identity: 24% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 1iin chain A Region: 18 - 291 Aligned: 239 Modelled: 262 Confidence: 100.0% Identity: 23% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 2pa4 chain B Region: 18 - 291 Aligned: 253 Modelled: 263 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose Phyre2 PDB 1mc3 chain A Region: 18 - 291 Aligned: 238 Modelled: 258 Confidence: 100.0% Identity: 24% Fold: Nucleotide-diphospho-sugar transferases Superfamily: Nucleotide-diphospho-sugar transferases Family: glucose-1-phosphate thymidylyltransferase Phyre2 PDB 2e3d chain B Region: 21 - 297 Aligned: 244 Modelled: 274 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase Phyre2 PDB 2cu2 chain A Region: 18 - 384 Aligned: 286 Modelled: 296 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase; PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8 Phyre2 PDB 3juk chain A Region: 16 - 294 Aligned: 255 Modelled: 274 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:udp-glucose pyrophosphorylase (galu); PDBTitle: the crystal structure of udp-glucose pyrophosphorylase complexed with2 udp-glucose Phyre2 1 c3brkX_ 2 c1yp3C_ 3 c3d98A_ 4 c2qkxA_ 5 c1hm8A_ 6 c2v0hA_ 7 c2oi6A_ 8 c1fwyA_ 9 c2ggqA_ 10 d1yp2a2 11 d1lvwa_ 12 d1fxoa_ 13 c2ux8G_ 14 d1h5ra_ 15 d1iina_ 16 c2pa4B_ 17 d1mc3a_ 18 c2e3dB_ 19 c2cu2A_ 20 c3jukA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3brkX_ 100.0 56 PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens 2 c1yp3C_ 100.0 39 PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp 3 c3d98A_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form 4 c2qkxA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate 5 c1hm8A_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a 6 c2v0hA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu) 7 c2oi6A_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4 8 c1fwyA_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac 9 c2ggqA_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii 10 d1yp2a2 100.0 41 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 11 d1lvwa_ 100.0 22 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 12 d1fxoa_ 100.0 23 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 13 c2ux8G_ 100.0 20 PDB header:transferase Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate. 14 d1h5ra_ 100.0 24 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 15 d1iina_ 100.0 23 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 16 c2pa4B_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose 17 d1mc3a_ 100.0 24 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase 18 c2e3dB_ 100.0 24 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase 19 c2cu2A_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase; PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8 20 c3jukA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:udp-glucose pyrophosphorylase (galu); PDBTitle: the crystal structure of udp-glucose pyrophosphorylase complexed with2 udp-glucose 21 d2cu2a2 not modelled 100.0 22 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:mannose-1-phosphate guanylyl transferase 22 c3hl3A_ not modelled 100.0 24 PDB header:transferase Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase; PDBTitle: 2.76 angstrom crystal structure of a putative glucose-1-phosphate2 thymidylyltransferase from bacillus anthracis in complex with a3 sucrose. 23 c2x5sB_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. 24 d1tzfa_ not modelled 100.0 19 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 25 c3pnnA_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83 26 d1g97a2 not modelled 100.0 20 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 27 d2oi6a2 not modelled 100.0 18 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 28 d1jyka_ not modelled 100.0 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 29 c1jylC_ not modelled 100.0 14 PDB header:transferase Chain: C: PDB Molecule:ctp:phosphocholine cytidylytransferase; PDBTitle: catalytic mechanism of ctp:phosphocholine2 cytidylytransferase from streptococcus pneumoniae (licc) 30 c2qh5B_ not modelled 99.9 15 PDB header:isomerase Chain: B: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose-6-phosphate isomerase from helicobacter2 pylori 31 c3oamD_ not modelled 99.9 16 PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae 32 c2xmhB_ not modelled 99.9 15 PDB header:transferase Chain: B: PDB Molecule:ctp-inositol-1-phosphate cytidylyltransferase; PDBTitle: the x-ray structure of ctp:inositol-1-phosphate2 cytidylyltransferase from archaeoglobus fulgidus 33 d1vica_ not modelled 99.9 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 34 c2xwlB_ not modelled 99.9 21 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg 35 d1vpaa_ not modelled 99.9 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 36 d1h7ea_ not modelled 99.9 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 37 d1i52a_ not modelled 99.9 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 38 d1vh1a_ not modelled 99.9 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 39 c3polA_ not modelled 99.9 13 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: 2.3 angstrom crystal structure of 3-deoxy-manno-octulosonate2 cytidylyltransferase (kdsb) from acinetobacter baumannii. 40 c3tqdA_ not modelled 99.8 18 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii 41 d1eyra_ not modelled 99.8 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 42 c2y6pC_ not modelled 99.8 20 PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb 43 d1qwja_ not modelled 99.8 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 44 c3f1cB_ not modelled 99.8 17 PDB header:transferase Chain: B: PDB Molecule:putative 2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from listeria monocytogenes 45 d1vh3a_ not modelled 99.8 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 46 d1w55a1 not modelled 99.8 18 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 47 c2wawA_ not modelled 99.7 16 PDB header:unknown function Chain: A: PDB Molecule:moba relate protein; PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1 48 c3ngwA_ not modelled 99.7 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis protein a PDBTitle: crystal structure of molybdopterin-guanine dinucleotide biosynthesis2 protein a from archaeoglobus fulgidus, northeast structural genomics3 consortium target gr189 49 d2dpwa1 not modelled 99.7 20 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:TTHA0179-like 50 d1e5ka_ not modelled 99.7 19 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Molybdenum cofactor biosynthesis protein MobA 51 c2vshB_ not modelled 99.7 15 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae 52 c2we9A_ not modelled 99.7 15 PDB header:unknown function Chain: A: PDB Molecule:moba-related protein; PDBTitle: crystal structure of rv0371c from mycobacterium2 tuberculosis h37rv 53 c2px7A_ not modelled 99.7 16 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from thermus thermophilus hb8 54 c3okrA_ not modelled 99.6 15 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 55 c3rsbB_ not modelled 99.6 19 PDB header:transferase Chain: B: PDB Molecule:adenosylcobinamide-phosphate guanylyltransferase; PDBTitle: structure of the archaeal gtp:adocbi-p guanylyltransferase (coby) from2 methanocaldococcus jannaschii 56 d1w77a1 not modelled 99.6 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 57 d1vgwa_ not modelled 99.6 19 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 58 c2i5kB_ not modelled 99.6 11 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p 59 d1yp2a1 not modelled 99.5 23 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 60 c2e8bA_ not modelled 99.5 21 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of the putative protein (aq1419) from aquifex2 aeolicus vf5 61 c3c8vA_ not modelled 99.5 9 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution 62 c2q4jB_ not modelled 99.5 14 PDB header:transferase Chain: B: PDB Molecule:probable utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at3g03250, a putative udp-glucose3 pyrophosphorylase 63 c3gueB_ not modelled 99.5 14 PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: crystal structure of udp-glucose phosphorylase from trypanosoma2 brucei, (tb10.389.0330) 64 d3tdta_ not modelled 99.4 15 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD 65 c3eg4A_ not modelled 99.4 12 PDB header:transferase Chain: A: PDB Molecule:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase from brucella melitensis3 biovar abortus 2308 66 c1w57A_ not modelled 99.3 18 PDB header:transferase Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme; PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn 67 c3eh0C_ not modelled 99.3 16 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli 68 d1vm8a_ not modelled 99.3 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 69 c3pmoA_ not modelled 99.3 15 PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution 70 d1jv1a_ not modelled 99.3 16 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 71 c2oefA_ not modelled 99.3 14 PDB header:transferase Chain: A: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2, PDBTitle: open and closed structures of the udp-glucose2 pyrophosphorylase from leishmania major 72 c3okrC_ not modelled 99.2 17 PDB header:transferase Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 73 c3oc9A_ not modelled 99.2 15 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica 74 d2icya2 not modelled 99.2 13 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 75 d1krra_ not modelled 99.2 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 76 c2iu9C_ not modelled 99.2 15 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) 77 d1fxja1 not modelled 99.1 15 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 78 c3i3aC_ not modelled 99.1 9 PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa 79 c3ectA_ not modelled 99.1 12 PDB header:transferase Chain: A: PDB Molecule:hexapeptide-repeat containing-acetyltransferase; PDBTitle: crystal structure of the hexapeptide-repeat containing-2 acetyltransferase vca0836 from vibrio cholerae 80 c3d5nB_ not modelled 99.0 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:q97w15_sulso; PDBTitle: crystal structure of the q97w15_sulso protein from2 sulfolobus solfataricus. nesg target ssr125. 81 c2ic7A_ not modelled 99.0 15 PDB header:transferase Chain: A: PDB Molecule:maltose transacetylase; PDBTitle: crystal structure of maltose transacetylase from2 geobacillus kaustophilus 82 c3fttA_ not modelled 99.0 15 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase sacol2570; PDBTitle: crystal structure of the galactoside o-acetyltransferase2 from staphylococcus aureus 83 c3cj8B_ not modelled 99.0 12 PDB header:transferase Chain: B: PDB Molecule:2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-2 succinyltransferase from enterococcus faecalis v583 84 d1ocxa_ not modelled 99.0 18 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 85 c3f1xA_ not modelled 99.0 19 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62. 86 d2jf2a1 not modelled 99.0 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 87 c3srtB_ not modelled 99.0 13 PDB header:transferase Chain: B: PDB Molecule:maltose o-acetyltransferase; PDBTitle: the crystal structure of a maltose o-acetyltransferase from2 clostridium difficile 630 88 d3bswa1 not modelled 99.0 12 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:PglD-like 89 c2yqsA_ not modelled 99.0 12 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form 90 c3q1xA_ not modelled 98.9 11 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of entamoeba histolytica serine acetyltransferase 12 in complex with l-serine 91 c3r3rA_ not modelled 98.9 13 PDB header:transferase Chain: A: PDB Molecule:ferripyochelin binding protein; PDBTitle: structure of the yrda ferripyochelin binding protein from salmonella2 enterica 92 c1qreA_ not modelled 98.9 14 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: a closer look at the active site of gamma-carbonic anhydrases: high2 resolution crystallographic studies of the carbonic anhydrase from3 methanosarcina thermophila 93 d1qrea_ not modelled 98.9 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 94 d1j2za_ not modelled 98.9 13 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 95 d1v3wa_ not modelled 98.8 17 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 96 c3fsyC_ not modelled 98.8 14 PDB header:transferase Chain: C: PDB Molecule:tetrahydrodipicolinate n-succinyltransferase; PDBTitle: structure of tetrahydrodipicolinate n-succinyltransferase2 (rv1201c;dapd) in complex with succinyl-coa from mycobacterium3 tuberculosis 97 d1ssqa_ not modelled 98.8 12 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 98 c3r0sA_ not modelled 98.8 18 PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni 99 c3kwdA_ not modelled 98.8 12 PDB header:lyase, protein binding, photosynthesis Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein; PDBTitle: inactive truncation of the beta-carboxysomal gamma-carbonic anhydrase,2 ccmm, form 1 100 d1t3da_ not modelled 98.8 11 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 101 c3ogzA_ not modelled 98.8 14 PDB header:transferase Chain: A: PDB Molecule:udp-sugar pyrophosphorylase; PDBTitle: protein structure of usp from l. major in apo-form 102 d1xhda_ not modelled 98.7 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 103 c3r1wA_ not modelled 98.7 9 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of a carbonic anhydrase from a crude oil degrading2 psychrophilic library 104 c3mc4A_ not modelled 98.7 13 PDB header:transferase Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis 105 c3ixcA_ not modelled 98.7 16 PDB header:transferase Chain: A: PDB Molecule:hexapeptide transferase family protein; PDBTitle: crystal structure of hexapeptide transferase family protein from2 anaplasma phagocytophilum 106 c1t3dB_ not modelled 98.7 15 PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a 107 c3fsbB_ not modelled 98.6 17 PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose 108 d2f9ca1 not modelled 98.6 11 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:YdcK-like 109 d2oi6a1 not modelled 98.6 19 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 110 d1mr7a_ not modelled 98.5 11 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 111 d1g97a1 not modelled 98.5 12 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 112 c3jqyB_ not modelled 98.5 17 PDB header:transferase Chain: B: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo 113 c3mqhD_ not modelled 98.5 17 PDB header:transferase Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase; PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid 114 c2wlgA_ not modelled 98.4 9 PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy 115 d1xata_ not modelled 98.3 10 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 116 c3eevC_ not modelled 98.3 21 PDB header:transferase Chain: C: PDB Molecule:chloramphenicol acetyltransferase; PDBTitle: crystal structure of chloramphenicol acetyltransferase vca0300 from2 vibrio cholerae o1 biovar eltor 117 c2rijA_ not modelled 98.1 11 PDB header:transferase Chain: A: PDB Molecule:putative 2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter3 jejuni at 1.90 a resolution 118 c1omxB_ not modelled 73.2 11 PDB header:transferase Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2; PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2) 119 c1xhbA_ not modelled 71.1 13 PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 120 d1ee6a_ not modelled 64.3 12 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate lyase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0