PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3pmoA_

Fold library id	PDB Header	Molecule	Title
c3pmoA_	PDB header: transferase	Chain: A: PDB Molecule: udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase;	PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution

Links to external resources
Added to library: Sat Jul 30 09:52:20 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S S H H H H H H S S G L V P R G S H M S T L S Y T L G Q L A A H V G A E V R G D A D L P I Q G L A T L Q E A G P A Q L S F L A N P Q Y R K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G S
T
S
T T
G G G
T T S
G G G G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L P E S R A G A V L L T A A D A D G F A G T A L V V A N P Y L A Y A S L S H L F D R K P K A A A G I H P T A I V A A D A E V D P S A S V G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S
T T
S S
S
G G G
S
T T
T T
T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y A V I E S G A R I G A G V S I G A H C V I G A R S V I G E G G W L A P R V T L Y H D V T I G A R V S I Q S G A V I G G E G F G F A N E K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T
T T
T T
T T
T T
T T
T T
T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V W Q K I A Q I G G V T I G D D V E I G A N T T I D R G A L S D T L I G N G V K L D N Q I M I A H N V Q I G D H T A M A A C V G I S G S A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S S
T T
T T
T T
T T
T T
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence I G R H C M L A G G V G L V G H I E I C D N V F V T G M T M V T R S I T E P G S Y S S G T A M Q P A A E W K K S A A R I R Q L D D M A R R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S
S S
T T
S
B
S
S
T

. . . . . . .

Sequence Q Q L E K R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	S	H	H	H	H	H	H	S	S	G	L	V	P	R	G	S	H	M	S	T	L	S	Y	T	L	G	Q	L	A	A	H	V	G	A	E	V	R	G	D	A	D	L	P	I	Q	G	L	A	T	L	Q	E	A	G	P	A	Q	L	S	F	L	A	N	P	Q	Y	R	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G	G	S																							T					S		T	T									G	G	G			T	T	S							G	G	G	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	P	E	S	R	A	G	A	V	L	L	T	A	A	D	A	D	G	F	A	G	T	A	L	V	V	A	N	P	Y	L	A	Y	A	S	L	S	H	L	F	D	R	K	P	K	A	A	A	G	I	H	P	T	A	I	V	A	A	D	A	E	V	D	P	S	A	S	V	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G				S										T	T		S	S						S											G	G	G								S				T	T					T	T					T	T					T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	A	V	I	E	S	G	A	R	I	G	A	G	V	S	I	G	A	H	C	V	I	G	A	R	S	V	I	G	E	G	G	W	L	A	P	R	V	T	L	Y	H	D	V	T	I	G	A	R	V	S	I	Q	S	G	A	V	I	G	G	E	G	F	G	F	A	N	E	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T					T	T					T	T					T	T					T	T					T	T					T	T					T	T					T	T					T	T														T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	W	Q	K	I	A	Q	I	G	G	V	T	I	G	D	D	V	E	I	G	A	N	T	T	I	D	R	G	A	L	S	D	T	L	I	G	N	G	V	K	L	D	N	Q	I	M	I	A	H	N	V	Q	I	G	D	H	T	A	M	A	A	C	V	G	I	S	G	S	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S					T	T							S	S	S						T	T					T	T					T	T					T	T					T	T					T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	I	G	R	H	C	M	L	A	G	G	V	G	L	V	G	H	I	E	I	C	D	N	V	F	V	T	G	M	T	M	V	T	R	S	I	T	E	P	G	S	Y	S	S	G	T	A	M	Q	P	A	A	E	W	K	K	S	A	A	R	I	R	Q	L	D	D	M	A	R	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S					T	T					S	S					S	S					T	T					S		B		S							S																		T
	.	.	.	.	.	.	.
Sequence	Q	Q	L	E	K	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)