Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	T	A	I	A	I	A	V	A	L	A	G	F	A	T	V	A	Q	A	A	P	K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	H	D	T	G	F	I	N	N	N	G	P	T	H	E	N	Q	L	G	A	G	A
Secondary structure
SS confidence
Disorder		?	?	?	?													?	?	?	?	?	?	?		?	?	?															?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	G	G	Y	Q	V	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	Y	K	G	S	V	E	N	G	A	Y	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	D	D	L	D	I	Y	T	R	L	G	G
Secondary structure
SS confidence
Disorder																							?			?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	V	W	R	A	D	T	K	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N	N	I	G	D	A	H	T	I	G	T	R	P	D	N
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	M	L	S	L	G	V	S	Y	R	F	G	Q	G	E	A	A	P	V	V	A	P	A	P	A	P	A	P	E	V	Q	T	K	H	F	T	L	K	S	D	V	L	F	N	F	N	K	A	T	L	K	P	E	G	Q	A	A	L	D	Q
Secondary structure
SS confidence
Disorder																?					?	?	?	?	?	?	?	?		?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	Y	S	Q	L	S	N	L	D	P	K	D	G	S	V	V	V	L	G	Y	T	D	R	I	G	S	D	A	Y	N	Q	G	L	S	E	R	R	A	Q	S	V	V	D	Y	L	I	S	K	G	I	P	A	D	K	I	S	A	R	G	M
Secondary structure
SS confidence
Disorder													?																																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Sequence		G	E	S	N	P	V	T	G	N	T	C	D	N	V	K	Q	R	A	A	L	I	D	C	L	A	P	D	R	R	V	E	I	E	V	K	G	I	K	D	V	V	T	Q	P	Q	A
Secondary structure
SS confidence
Disorder																				?	?	?	?	?															?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2l26 chain A Region: 193 - 335 Aligned: 132 Modelled: 143 Confidence: 100.0% Identity: 33% PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains Phyre2 PDB 2aiz chain P domain 1 Region: 196 - 333 Aligned: 127 Modelled: 138 Confidence: 100.0% Identity: 27% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 2kgw chain A Region: 197 - 334 Aligned: 127 Modelled: 138 Confidence: 100.0% Identity: 32% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis Phyre2 PDB 3td4 chain D Region: 208 - 338 Aligned: 120 Modelled: 131 Confidence: 100.0% Identity: 26% PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate Phyre2 PDB 1r1m chain A Region: 208 - 338 Aligned: 129 Modelled: 131 Confidence: 100.0% Identity: 40% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis Phyre2 PDB 1r1m chain A Region: 208 - 338 Aligned: 129 Modelled: 131 Confidence: 100.0% Identity: 40% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 2k1s chain A Region: 200 - 336 Aligned: 126 Modelled: 137 Confidence: 100.0% Identity: 33% PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. Phyre2 PDB 3khn chain B Region: 215 - 334 Aligned: 109 Modelled: 120 Confidence: 100.0% Identity: 30% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. Phyre2 PDB 2hqs chain C domain 1 Region: 218 - 333 Aligned: 105 Modelled: 116 Confidence: 100.0% Identity: 30% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 3cyq chain M Region: 219 - 335 Aligned: 107 Modelled: 117 Confidence: 99.9% Identity: 22% PDB header:membrane protein Chain: M: PDB Molecule:chemotaxis protein motb; PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid Phyre2 PDB 2zvy chain B Region: 215 - 334 Aligned: 106 Modelled: 120 Confidence: 99.9% Identity: 22% PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) Phyre2 PDB 3oon chain A Region: 205 - 334 Aligned: 108 Modelled: 110 Confidence: 99.9% Identity: 30% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 Phyre2 PDB 3ldt chain A Region: 214 - 338 Aligned: 111 Modelled: 125 Confidence: 99.9% Identity: 23% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila Phyre2 PDB 1g90 chain A Region: 22 - 197 Aligned: 176 Modelled: 176 Confidence: 99.9% Identity: 98% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 2k0l chain A Region: 10 - 209 Aligned: 200 Modelled: 200 Confidence: 99.9% Identity: 82% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Phyre2 PDB 2zov chain A Region: 218 - 334 Aligned: 95 Modelled: 117 Confidence: 99.9% Identity: 23% PDB header:membrane protein Chain: A: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form i) Phyre2 PDB 1qjp chain A Region: 22 - 192 Aligned: 137 Modelled: 171 Confidence: 99.8% Identity: 99% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 3nb3 chain C Region: 22 - 192 Aligned: 137 Modelled: 171 Confidence: 99.8% Identity: 99% PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Phyre2 PDB 2zf8 chain A Region: 220 - 312 Aligned: 83 Modelled: 93 Confidence: 99.8% Identity: 30% PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty Phyre2 PDB 2x27 chain X Region: 20 - 192 Aligned: 173 Modelled: 173 Confidence: 99.7% Identity: 12% PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa Phyre2 1 c2l26A_ 2 d2aizp1 3 c2kgwA_ 4 c3td4D_ 5 c1r1mA_ 6 d1r1ma_ 7 c2k1sA_ 8 c3khnB_ 9 d2hqsc1 10 c3cyqM_ 11 c2zvyB_ 12 c3oonA_ 13 c3ldtA_ 14 d1g90a_ 15 c2k0lA_ 16 c2zovA_ 17 d1qjpa_ 18 c3nb3C_ 19 c2zf8A_ 20 c2x27X_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2l26A_ 100.0 33 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains 2 d2aizp1 100.0 27 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 3 c2kgwA_ 100.0 32 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis 4 c3td4D_ 100.0 26 PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate 5 c1r1mA_ 100.0 40 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis 6 d1r1ma_ 100.0 40 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 7 c2k1sA_ 100.0 33 PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. 8 c3khnB_ 100.0 30 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. 9 d2hqsc1 100.0 30 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 10 c3cyqM_ 99.9 22 PDB header:membrane protein Chain: M: PDB Molecule:chemotaxis protein motb; PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid 11 c2zvyB_ 99.9 22 PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) 12 c3oonA_ 99.9 30 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 13 c3ldtA_ 99.9 23 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila 14 d1g90a_ 99.9 98 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 15 c2k0lA_ 99.9 82 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. 16 c2zovA_ 99.9 23 PDB header:membrane protein Chain: A: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form i) 17 d1qjpa_ 99.8 99 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 18 c3nb3C_ 99.8 99 PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components 19 c2zf8A_ 99.8 30 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 20 c2x27X_ 99.7 12 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa 21 d1p4ta_ not modelled 99.7 17 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 22 c2f1tB_ not modelled 99.7 13 PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw 23 c2jmmA_ not modelled 99.7 76 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein 24 c3qraA_ not modelled 99.6 18 PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis 25 d1qj8a_ not modelled 99.5 23 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 26 c2lhfA_ not modelled 99.4 14 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles 27 d1uynx_ not modelled 97.7 20 Fold:Transmembrane beta-barrels Superfamily:Autotransporter Family:Autotransporter 28 c3kvnA_ not modelled 97.6 20 PDB header:hydrolase Chain: A: PDB Molecule:esterase esta; PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa 29 c3aehB_ not modelled 97.5 12 PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp 30 c2qomB_ not modelled 97.2 16 PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain. 31 c3sljA_ not modelled 97.2 16 PDB header:protein transport Chain: A: PDB Molecule:serine protease espp; PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant 32 c2x4mD_ not modelled 97.0 12 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 33 c3qq2C_ not modelled 96.8 12 PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka 34 c3dwoX_ not modelled 96.1 11 PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue 35 c2iwvD_ not modelled 96.0 18 PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation 36 c3brzA_ not modelled 94.5 15 PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx 37 c3nsgA_ not modelled 94.5 10 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 38 d1i78a_ not modelled 91.3 19 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane protease OMPT 39 d1osma_ not modelled 90.3 15 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 40 d1t16a_ not modelled 89.1 10 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Outer membrane protein transport protein 41 c2ervA_ not modelled 88.7 10 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein paer03002360; PDBTitle: crystal structure of the outer membrane enzyme pagl 42 c2wjqA_ not modelled 88.7 16 PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. 43 d1phoa_ not modelled 85.5 11 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 44 c3a2rX_ not modelled 81.0 13 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis 45 d1gvha3 not modelled 78.5 17 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 46 d2zfga1 not modelled 78.5 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 47 c1gvhA_ not modelled 76.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:flavohemoprotein; PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket 48 c2r6hC_ not modelled 75.8 25 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis 49 c2iahA_ not modelled 74.6 13 PDB header:membrane protein Chain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine. 50 d2fgqx1 not modelled 70.6 10 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 51 c1xkhC_ not modelled 64.7 13 PDB header:membrane protein Chain: C: PDB Molecule:ferripyoverdine receptor; PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine 52 c2hdiA_ not modelled 64.4 14 PDB header:protein transport,antimicrobial protein Chain: A: PDB Molecule:colicin i receptor; PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia. 53 c1cqxB_ not modelled 63.9 23 PDB header:lipid binding protein Chain: B: PDB Molecule:flavohemoprotein; PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution 54 d1cqxa3 not modelled 62.8 20 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 55 d1tvca2 not modelled 60.4 18 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 56 c1tvcA_ not modelled 55.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase component c; PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath) 57 d1krha2 not modelled 54.4 15 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 58 c2gpjA_ not modelled 47.5 4 PDB header:fad-binding protein Chain: A: PDB Molecule:siderophore-interacting protein; PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution 59 c2oghA_ not modelled 43.7 27 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor eif-1; PDBTitle: solution structure of yeast eif1 60 c3dzmB_ not modelled 41.7 10 PDB header:unknown function Chain: B: PDB Molecule:hypothetical conserved protein; PDBTitle: crystal structure of a major outer membrane protein from thermus2 thermophilus hb27 61 d2gdga1 not modelled 40.6 13 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 62 d2vdfa1 not modelled 40.3 10 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane adhesin/invasin OpcA 63 d1gd0a_ not modelled 39.8 13 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 64 c3t5sA_ not modelled 38.9 21 PDB header:immune system Chain: A: PDB Molecule:macrophage migration inhibitory factor; PDBTitle: structure of macrophage migration inhibitory factor from giardia2 lamblia 65 c3b64A_ not modelled 38.0 29 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major 66 c1xkwA_ not modelled 34.7 13 PDB header:membrane protein Chain: A: PDB Molecule:fe(iii)-pyochelin receptor; PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa 67 d1hfoa_ not modelled 33.6 25 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 68 c3ct5A_ not modelled 33.6 33 PDB header:hydrolase Chain: A: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail 69 d1fima_ not modelled 33.1 12 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 70 c3fwtA_ not modelled 32.2 21 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: crystal structure of leishmania major mif2 71 c3o0dF_ not modelled 31.0 20 PDB header:hydrolase Chain: F: PDB Molecule:triacylglycerol lipase; PDBTitle: crystal structure of lip2 lipase from yarrowia lipolytica at 1.7 a2 resolution 72 d2jnaa1 not modelled 30.8 33 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 73 c3k13A_ not modelled 30.1 14 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 74 d2pora_ not modelled 29.4 20 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 75 c3l7pA_ not modelled 29.4 28 PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans 76 d1jmxa1 not modelled 29.1 21 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 77 c2bgjB_ not modelled 28.7 22 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase; PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms 78 c3pohA_ not modelled 28.6 22 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase f1; PDBTitle: crystal structure of an endo-beta-n-acetylglucosaminidase (bt_3987)2 from bacteroides thetaiotaomicron vpi-5482 at 1.55 a resolution 79 d2if1a_ not modelled 28.3 14 Fold:eIF1-like Superfamily:eIF1-like Family:eIF1-like 80 c2os5C_ not modelled 28.3 20 PDB header:cytokine Chain: C: PDB Molecule:acemif; PDBTitle: macrophage migration inhibitory factor from ancylostoma ceylanicum 81 c1krhA_ not modelled 27.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 82 c2rd5D_ not modelled 26.7 27 PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 83 c3g40A_ not modelled 26.6 18 PDB header:transport protein Chain: A: PDB Molecule:na-k-cl cotransporter; PDBTitle: crystal structure of the cytoplasmic domain of a2 prokaryotic cation chloride cotransporter 84 c2yciX_ not modelled 26.5 17 PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native 85 c3bryB_ not modelled 26.1 14 PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux 86 c3ca8B_ not modelled 25.6 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 87 d2nvma1 not modelled 24.9 35 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 88 d1f6ya_ not modelled 24.4 12 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 89 c2xczA_ not modelled 24.0 29 PDB header:immune system Chain: A: PDB Molecule:possible atls1-like light-inducible protein; PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus 90 d2nlva1 not modelled 23.9 24 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 91 c3gacD_ not modelled 23.0 13 PDB header:cytokine Chain: D: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: structure of mif with hpp 92 c3efmA_ not modelled 22.0 14 PDB header:membrane protein Chain: A: PDB Molecule:ferric alcaligin siderophore receptor; PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis 93 c2xznF_ not modelled 21.7 29 PDB header:ribosome Chain: F: PDB Molecule:eif1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 94 c3d7qB_ not modelled 21.5 24 PDB header:unknown function Chain: B: PDB Molecule:xisi protein-like; PDBTitle: crystal structure of a xisi-like protein (npun_ar114) from nostoc2 punctiforme pcc 73102 at 2.30 a resolution 95 d1uwca_ not modelled 20.9 21 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 96 d2piia_ not modelled 20.7 20 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 97 c3ce8A_ not modelled 20.4 20 PDB header:unknown function Chain: A: PDB Molecule:putative pii-like nitrogen regulatory protein; PDBTitle: crystal structure of a duf3240 family protein (sbal_0098) from2 shewanella baltica os155 at 2.40 a resolution 98 d1pbya1 not modelled 20.1 14 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 99 d3tgla_ not modelled 19.9 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0