Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0ACR9
DateThu Jan 5 11:18:50 GMT 2012
Unique Job ID2ce612f18563fb8f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d3broa1
Top template information
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
Confidence and coverage
Confidence: 99.9% Coverage: 76%
134 residues ( 76% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENRNKMLKAQGINETLFMA
Secondary structure 
SS confidence 
Disorder  ???????
???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEK
Secondary structure 
SS confidence 
Disorder 
??????
????
Disorder confidence 
 
   .........130.........140.........150.........160.........170......
Sequence  GHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLSRLDQMEQDGVVLEAMS
Secondary structure 
SS confidence 
Disorder 
????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3bro chain A domain 1

3D model

Region: 28 - 161
Aligned: 134
Modelled: 134
Confidence: 99.9%
Identity: 20%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MarR-like transcriptional regulators

Phyre2

PDB 3bj6 chain B

3D model

Region: 25 - 169
Aligned: 143
Modelled: 145
Confidence: 99.9%
Identity: 17%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579

Phyre2

PDB 2fbk chain A domain 1

3D model

Region: 4 - 164
Aligned: 154
Modelled: 154
Confidence: 99.9%
Identity: 22%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MarR-like transcriptional regulators

Phyre2

PDB 2fbh chain A domain 1

3D model

Region: 29 - 164
Aligned: 135
Modelled: 136
Confidence: 99.9%
Identity: 19%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MarR-like transcriptional regulators

Phyre2

PDB 3bpx chain B

3D model

Region: 29 - 165
Aligned: 135
Modelled: 137
Confidence: 99.9%
Identity: 19%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of marr

Phyre2

PDB 3k0l chain A

3D model

Region: 29 - 162
Aligned: 132
Modelled: 134
Confidence: 99.9%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp

Phyre2

PDB 3e6m chain D

3D model

Region: 20 - 164
Aligned: 143
Modelled: 145
Confidence: 99.9%
Identity: 20%
PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.

Phyre2

PDB 1s3j chain A

3D model

Region: 26 - 163
Aligned: 136
Modelled: 137
Confidence: 99.9%
Identity: 24%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MarR-like transcriptional regulators

Phyre2

PDB 3bja chain A

3D model

Region: 23 - 163
Aligned: 139
Modelled: 141
Confidence: 99.9%
Identity: 20%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution

Phyre2

PDB 2gxg chain A

3D model

Region: 25 - 165
Aligned: 138
Modelled: 141
Confidence: 99.9%
Identity: 19%
PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7

Phyre2

PDB 1lj9 chain A

3D model

Region: 29 - 167
Aligned: 137
Modelled: 139
Confidence: 99.9%
Identity: 18%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MarR-like transcriptional regulators

Phyre2

PDB 3nrv chain C

3D model

Region: 29 - 164
Aligned: 134
Modelled: 136
Confidence: 99.9%
Identity: 25%
PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1

Phyre2

PDB 3nqo chain B

3D model

Region: 26 - 159
Aligned: 132
Modelled: 131
Confidence: 99.9%
Identity: 14%
PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution

Phyre2

PDB 2eth chain A domain 1

3D model

Region: 25 - 163
Aligned: 137
Modelled: 139
Confidence: 99.9%
Identity: 20%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MarR-like transcriptional regulators

Phyre2

PDB 3g3z chain A

3D model

Region: 30 - 164
Aligned: 133
Modelled: 135
Confidence: 99.9%
Identity: 18%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis

Phyre2

PDB 2a61 chain A domain 1

3D model

Region: 28 - 164
Aligned: 135
Modelled: 137
Confidence: 99.9%
Identity: 23%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MarR-like transcriptional regulators

Phyre2

PDB 1lnw chain A

3D model

Region: 18 - 160
Aligned: 139
Modelled: 143
Confidence: 99.9%
Identity: 17%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MarR-like transcriptional regulators

Phyre2

PDB 1z91 chain A domain 1

3D model

Region: 29 - 162
Aligned: 130
Modelled: 134
Confidence: 99.9%
Identity: 22%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MarR-like transcriptional regulators

Phyre2

PDB 1jgs chain A

3D model

Region: 29 - 159
Aligned: 129
Modelled: 131
Confidence: 99.9%
Identity: 27%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MarR-like transcriptional regulators

Phyre2

PDB 2nnn chain B

3D model

Region: 29 - 159
Aligned: 128
Modelled: 131
Confidence: 99.9%
Identity: 20%
PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa

Phyre2
1
d3broa1
2
c3bj6B_
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d2fbka1
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d2fbha1
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c3bpxB_
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c3k0lA_
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c3e6mD_
8
d1s3ja_
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c3bjaA_
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c2gxgA_
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d1lj9a_
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c3nrvC_
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c3nqoB_
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d2etha1
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c3g3zA_
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d2a61a1
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d1lnwa_
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d1z91a1
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d1jgsa_
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c2nnnB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d3broa1
99.9 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
2c3bj6B_
99.9 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
3d2fbka1
99.9 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
4d2fbha1
99.9 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
5c3bpxB_
99.9 19 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of marr
6c3k0lA_
99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
7c3e6mD_
99.9 20 PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
8d1s3ja_
99.9 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
9c3bjaA_
99.9 20 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
10c2gxgA_
99.9 19 PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
11d1lj9a_
99.9 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
12c3nrvC_
99.9 25 PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
13c3nqoB_
99.9 14 PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
14d2etha1
99.9 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
15c3g3zA_
99.9 18 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
16d2a61a1
99.9 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
17d1lnwa_
99.9 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
18d1z91a1
99.9 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
19d1jgsa_
99.9 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
20c2nnnB_
99.9 20 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
21c3cjnA_
not modelled 99.9 19 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi
22d2bv6a1
not modelled 99.9 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
23d2fbia1
not modelled 99.9 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
24c3boqB_
not modelled 99.9 18 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi
25c3fm5D_
not modelled 99.9 17 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1
26c2qwwB_
not modelled 99.9 16 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
27c2nyxB_
not modelled 99.8 18 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
28c3f3xA_
not modelled 99.8 22 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of the transcriptional regulator bldr2 from sulfolobus solfataricus
29c3ecoB_
not modelled 99.8 19 PDB header:transcription
Chain: B: PDB Molecule:mepr;
PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa
30c3s2wB_
not modelled 99.8 18 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1
31c2rdpA_
not modelled 99.8 24 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
32c3oopA_
not modelled 99.8 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2960 protein;
PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262
33c3cdhB_
not modelled 99.8 23 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3
34c3jw4C_
not modelled 99.8 19 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, marr/emrr family;
PDBTitle: the structure of a putative marr family transcriptional regulator from2 clostridium acetobutylicum
35c3deuB_
not modelled 99.8 23 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator slya;
PDBTitle: crystal structure of transcription regulatory protein slya2 from salmonella typhimurium in complex with salicylate3 ligands
36c3hrmA_
not modelled 99.8 19 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator sarz;
PDBTitle: crystal structure of staphylococcus aureus protein sarz in sulfenic2 acid form
37c3kp3B_
not modelled 99.8 12 PDB header:transcription regulator/antibiotic
Chain: B: PDB Molecule:transcriptional regulator tcar;
PDBTitle: staphylococcus epidermidis in complex with ampicillin
38d3deua1
not modelled 99.8 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
39c2fxaB_
not modelled 99.8 20 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
40c2fa5B_
not modelled 99.8 22 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
41c2pexA_
not modelled 99.8 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator ohrr;
PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris
42c3bddD_
not modelled 99.8 23 PDB header:transcription
Chain: D: PDB Molecule:regulatory protein marr;
PDBTitle: crystal structure of a putative multiple antibiotic-resistance2 repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a3 resolution
43d1p4xa1
not modelled 99.8 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
44d2hr3a1
not modelled 99.7 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
45d2fxaa1
not modelled 99.7 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
46d1p4xa2
not modelled 99.7 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
47d1ku9a_
not modelled 99.7 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
48d1hsja1
not modelled 99.7 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
49d2frha1
not modelled 99.7 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
50c1p4xA_
not modelled 99.7 15 PDB header:transcription
Chain: A: PDB Molecule:staphylococcal accessory regulator a homologue;
PDBTitle: crystal structure of sars protein from staphylococcus aureus
51c3tgnA_
not modelled 99.7 18 PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
52d1sfxa_
not modelled 99.5 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
53c3r0aB_
not modelled 99.4 13 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
54d1ub9a_
not modelled 99.4 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
55c1hsjA_
not modelled 99.3 11 PDB header:transcription/sugar binding protein
Chain: A: PDB Molecule:fusion protein consisting of staphylococcus
PDBTitle: sarr mbp fusion structure
56d1okra_
not modelled 99.3 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
57c2x4hA_
not modelled 99.2 15 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
58c2it0A_
not modelled 99.1 22 PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
59c1f5tA_
not modelled 99.1 17 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
60d3ctaa1
not modelled 99.1 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
61c3ctaA_
not modelled 99.0 31 PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase;
PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum
62c2wteB_
not modelled 98.9 16 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
63c1fx7C_
not modelled 98.8 20 PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
64c2ev5B_
not modelled 98.8 21 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
65c3hruA_
not modelled 98.7 17 PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+
66c2h09A_
not modelled 98.7 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
67c1g3wA_
not modelled 98.6 17 PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
68d1sd4a_
not modelled 98.5 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
69d2d1ha1
not modelled 98.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
70c3hhhA_
not modelled 98.5 18 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, padr family;
PDBTitle: crystal structure of transcriptional regulator, a member of padr2 family, from enterococcus faecalis v583
71d1xmaa_
not modelled 98.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PadR-like
72c1xmaA_
not modelled 98.5 18 PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulator;
PDBTitle: structure of a transcriptional regulator from clostridium thermocellum2 cth-833
73c3f8fA_
not modelled 98.5 21 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, padr-like family;
PDBTitle: crystal structure of multidrug binding transcriptional regulator lmrr2 complexed with daunomycin
74c3l7wA_
not modelled 98.4 18 PDB header:transcription
Chain: A: PDB Molecule:putative uncharacterized protein smu.1704;
PDBTitle: the crystal structure of smu.1704 from streptococcus mutans ua159
75c2oqgA_
not modelled 98.4 17 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
76c3f6oB_
not modelled 98.2 19 PDB header:transcription regulator
Chain: B: PDB Molecule:probable transcriptional regulator, arsr family
PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
77c3ri2B_
not modelled 98.0 19 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, padr-like family;
PDBTitle: crystal structure of padr family transcriptional regulator from2 eggerthella lenta dsm 2243
78d2g9wa1
not modelled 98.0 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
79d1ulya_
not modelled 98.0 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Hypothetical protein PH1932
80c3f6vA_
not modelled 97.9 19 PDB header:transcription regulator
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family
PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance
81c2qufB_
not modelled 97.9 19 PDB header:transcription
Chain: B: PDB Molecule:transcription factor pf0095;
PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus
82d2esha1
not modelled 97.9 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PadR-like
83c3cuoB_
not modelled 97.9 16 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
84d1mkma1
not modelled 97.8 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
85c2kkoB_
not modelled 97.8 18 PDB header:dna binding protein
Chain: B: PDB Molecule:possible transcriptional regulatory protein
PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.
86c1r22B_
not modelled 97.8 14 PDB header:transcription repressor
Chain: B: PDB Molecule:transcriptional repressor smtb;
PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
87c4a5mH_
not modelled 97.7 19 PDB header:transcription
Chain: H: PDB Molecule:uncharacterized hth-type transcriptional regulator yybr;
PDBTitle: redox regulator hypr in its oxidized form
88c3pqkD_
not modelled 97.7 17 PDB header:transcription
Chain: D: PDB Molecule:biofilm growth-associated repressor;
PDBTitle: crystal structure of the transcriptional repressor bigr from xylella2 fastidiosa
89d1r1ta_
not modelled 97.7 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
90d1r1ua_
not modelled 97.6 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
91d1z7ua1
not modelled 97.6 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
92c3jthA_
not modelled 97.6 20 PDB header:transcription
Chain: A: PDB Molecule:transcription activator hlyu;
PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6
93d2p4wa1
not modelled 97.5 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF1790-like
94d2f2ea1
not modelled 97.5 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
95d2isya1
not modelled 97.5 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
96c1mkmA_
not modelled 97.5 25 PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr
97d2fswa1
not modelled 97.5 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
98c2v79B_
not modelled 97.5 17 PDB header:dna-binding protein
Chain: B: PDB Molecule:dna replication protein dnad;
PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis
99c3elkA_
not modelled 97.4 18 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator ta0346;
PDBTitle: crystal structure of putative transcriptional regulator ta0346 from2 thermoplasma acidophilum
100d1g3wa1
not modelled 97.4 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
101c3m1eA_
not modelled 97.4 14 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of benm_dbd
102c2k4bA_
not modelled 97.4 11 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: copr repressor structure
103c3hhgF_
not modelled 97.3 20 PDB header:transcription regulator
Chain: F: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: structure of crga, a lysr-type transcriptional regulator from2 neisseria meningitidis.
104c2xroE_
not modelled 97.3 13 PDB header:dna-binding protein/dna
Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator
105c2jscB_
not modelled 97.3 19 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator rv1994c/mt2050;
PDBTitle: nmr structure of the cadmium metal-sensor cmtr from mycobacterium2 tuberculosis
106d2ev0a1
not modelled 97.3 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
107c2xigA_
not modelled 97.3 21 PDB header:transcription
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites
108d1p6ra_
not modelled 97.3 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
109c2zkzC_
not modelled 97.3 10 PDB header:transcription
Chain: C: PDB Molecule:transcriptional repressor pagr;
PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis
110c3t1bB_
not modelled 97.3 17 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: crystal structure of the full-length aphb n100e variant
111c2dqlA_
not modelled 97.3 15 PDB header:circadian clock protein
Chain: A: PDB Molecule:pex protein;
PDBTitle: crytal structure of the circadian clock associated protein2 pex from anabaena
112d1z05a1
not modelled 97.3 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
113d1z6ra1
not modelled 97.3 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
114c3df8A_
not modelled 97.3 24 PDB header:transcription
Chain: A: PDB Molecule:possible hxlr family transcriptional factor;
PDBTitle: the crystal structure of a possible hxlr family transcriptional factor2 from thermoplasma volcanium gss1
115d1jhfa1
not modelled 97.2 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
116d1stza1
not modelled 97.2 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
117c2esnC_
not modelled 97.2 15 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of probable transcriptional regulator pa04772 from pseudomonas aeruginosa
118d2dk5a1
not modelled 97.2 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RPO3F domain-like
119c2g7uB_
not modelled 97.2 25 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
120c2e1nA_
not modelled 97.2 16 PDB header:circadian clock protein
Chain: A: PDB Molecule:pex;
PDBTitle: crystal structure of the cyanobacterium circadian clock modifier pex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0