Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	W	I	G	I	I	S	L	F	P	E	M	F	R	A	I	T	D	Y	G	V	T	G	R	A	V	K	N	G	L	L	S	I	Q	S	W	S	P	R	D	F	T	H	D	R	H	R	T	V	D	D	R	P	Y	G	G	G	P	G	M
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	M	M	V	Q	P	L	R	D	A	I	H	A	A	K	A	A	A	G	E	G	A	K	V	I	Y	L	S	P	Q	G	R	K	L	D	Q	A	G	V	S	E	L	A	T	N	Q	K	L	I	L	V	C	G	R	Y	E	G	I	D	E
Secondary structure
SS confidence
Disorder																	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	V	I	Q	T	E	I	D	E	E	W	S	I	G	D	Y	V	L	S	G	G	E	L	P	A	M	T	L	I	D	S	V	S	R	F	I	P	G	V	L	G	H	E	A	S	A	T	E	D	S	F	A	E	G	L	L	D	C	P	H
Secondary structure
SS confidence
Disorder																																															?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	T	R	P	E	V	L	E	G	M	E	V	P	P	V	L	L	S	G	N	H	A	E	I	R	R	W	R	L	K	Q	S	L	G	R	T	W	L	R	R	P	E	L	L	E	N	L	A	L	T	E	E	Q	A	R	L	L	A	E	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Sequence		K	T	E	H	A	Q	Q	Q	H	K	H	D	G	M	A
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ual chain A Region: 1 - 249 Aligned: 240 Modelled: 240 Confidence: 100.0% Identity: 83% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 1p9p chain A Region: 1 - 246 Aligned: 235 Modelled: 235 Confidence: 100.0% Identity: 100% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 3ky7 chain A Region: 1 - 245 Aligned: 228 Modelled: 228 Confidence: 100.0% Identity: 43% PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 Phyre2 PDB 3ief chain A Region: 2 - 232 Aligned: 222 Modelled: 222 Confidence: 100.0% Identity: 44% PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. Phyre2 PDB 3quv chain B Region: 1 - 225 Aligned: 215 Modelled: 215 Confidence: 100.0% Identity: 45% PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus Phyre2 PDB 1oy5 chain B Region: 1 - 234 Aligned: 215 Modelled: 220 Confidence: 100.0% Identity: 41% PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus Phyre2 PDB 1oy5 chain A Region: 1 - 234 Aligned: 215 Modelled: 220 Confidence: 100.0% Identity: 41% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: tRNA(m1G37)-methyltransferase TrmD Phyre2 PDB 3knu chain D Region: 1 - 213 Aligned: 196 Modelled: 196 Confidence: 100.0% Identity: 45% PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum Phyre2 PDB 1o6d chain A Region: 1 - 154 Aligned: 131 Modelled: 131 Confidence: 97.2% Identity: 8% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YbeA-like Phyre2 PDB 1to0 chain A Region: 72 - 154 Aligned: 81 Modelled: 77 Confidence: 96.4% Identity: 21% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YbeA-like Phyre2 PDB 2v3j chain A Region: 79 - 148 Aligned: 70 Modelled: 69 Confidence: 96.3% Identity: 14% PDB header:ribosomal protein Chain: A: PDB Molecule:essential for mitotic growth 1; PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase Phyre2 PDB 1vh0 chain A Region: 72 - 154 Aligned: 81 Modelled: 81 Confidence: 96.2% Identity: 22% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YbeA-like Phyre2 PDB 2v3k chain A domain 1 Region: 79 - 148 Aligned: 70 Modelled: 69 Confidence: 96.1% Identity: 14% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: EMG1/NEP1-like Phyre2 PDB 1ns5 chain A Region: 80 - 154 Aligned: 73 Modelled: 73 Confidence: 95.0% Identity: 19% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YbeA-like Phyre2 PDB 3o7b chain A Region: 80 - 149 Aligned: 67 Modelled: 67 Confidence: 78.5% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:ribosome biogenesis nep1 rna methyltransferase; PDBTitle: crystal structure of archaeoglobus fulgidus nep1 bound to s-2 adenosylhomocysteine Phyre2 PDB 3ai9 chain X Region: 58 - 134 Aligned: 68 Modelled: 67 Confidence: 46.1% Identity: 24% PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase Phyre2 PDB 3d3r chain A domain 1 Region: 115 - 138 Aligned: 24 Modelled: 24 Confidence: 44.2% Identity: 38% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 3d3r chain A Region: 115 - 138 Aligned: 24 Modelled: 24 Confidence: 43.1% Identity: 38% PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 Phyre2 PDB 2ot2 chain A domain 1 Region: 128 - 138 Aligned: 11 Modelled: 11 Confidence: 29.4% Identity: 27% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 1dj3 chain A Region: 57 - 136 Aligned: 78 Modelled: 80 Confidence: 28.8% Identity: 19% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Nitrogenase iron protein-like Phyre2 1 d1uala_ 2 d1p9pa_ 3 c3ky7A_ 4 c3iefA_ 5 c3quvB_ 6 c1oy5B_ 7 d1oy5a_ 8 c3knuD_ 9 d1o6da_ 10 d1to0a_ 11 c2v3jA_ 12 d1vh0a_ 13 d2v3ka1 14 d1ns5a_ 15 c3o7bA_ 16 c3ai9X_ 17 d3d3ra1 18 c3d3rA_ 19 d2ot2a1 20 d1dj3a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1uala_ 100.0 83 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 2 d1p9pa_ 100.0 100 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 3 c3ky7A_ 100.0 43 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 4 c3iefA_ 100.0 44 PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. 5 c3quvB_ 100.0 45 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus 6 c1oy5B_ 100.0 41 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus 7 d1oy5a_ 100.0 41 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 8 c3knuD_ 100.0 45 PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum 9 d1o6da_ 97.2 8 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 10 d1to0a_ 96.4 21 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 11 c2v3jA_ 96.3 14 PDB header:ribosomal protein Chain: A: PDB Molecule:essential for mitotic growth 1; PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase 12 d1vh0a_ 96.2 22 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 13 d2v3ka1 96.1 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:EMG1/NEP1-like 14 d1ns5a_ 95.0 19 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 15 c3o7bA_ 78.5 18 PDB header:transferase Chain: A: PDB Molecule:ribosome biogenesis nep1 rna methyltransferase; PDBTitle: crystal structure of archaeoglobus fulgidus nep1 bound to s-2 adenosylhomocysteine 16 c3ai9X_ 46.1 24 PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase 17 d3d3ra1 44.2 38 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 18 c3d3rA_ 43.1 38 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 19 d2ot2a1 29.4 27 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 20 d1dj3a_ 28.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 21 d1dj2a_ not modelled 27.4 22 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 22 d2qmma1 not modelled 25.8 24 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 23 c1zmrA_ not modelled 24.8 24 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of the e. coli phosphoglycerate kinase 24 c1zosE_ not modelled 23.9 21 PDB header:hydrolase Chain: E: PDB Molecule:5'-methylthioadenosine / s-adenosylhomocysteine PDBTitle: structure of 5'-methylthionadenosine/s-adenosylhomocysteine2 nucleosidase from s. pneumoniae with a transition-state3 inhibitor mt-imma 25 d2z1ca1 not modelled 21.6 22 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 26 d1sqsa_ not modelled 21.1 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 27 d2z1aa2 not modelled 20.3 23 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 28 c1xi4O_ not modelled 19.2 22 PDB header:endocytosis/exocytosis Chain: O: PDB Molecule:clathrin light chain a; PDBTitle: clathrin d6 coat 29 c1rcuB_ not modelled 18.9 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein vt76; PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76 30 d1rcua_ not modelled 18.9 22 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 31 d1vjda_ not modelled 18.0 27 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 32 d3bbda1 not modelled 17.2 15 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:EMG1/NEP1-like 33 c1zggA_ not modelled 16.5 17 PDB header:hydrolase Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine- PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis 34 c3dcmX_ not modelled 16.3 22 PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine 35 d1qf5a_ not modelled 15.7 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 36 d1jysa_ not modelled 15.1 24 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 37 c2ky8A_ not modelled 14.9 55 PDB header:transcription/dna Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2; PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence 38 c2cunA_ not modelled 14.4 16 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 39 d1fdja_ not modelled 14.1 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 40 c1w4zA_ not modelled 13.6 13 PDB header:antibiotic biosynthesis Chain: A: PDB Molecule:ketoacyl reductase; PDBTitle: structure of actinorhodin polyketide (actiii) reductase 41 d16pka_ not modelled 13.4 26 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 42 d1prtf_ not modelled 13.0 33 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 43 d1vpea_ not modelled 12.6 23 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 44 c3r7tA_ not modelled 12.6 17 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of adenylosuccinate synthetase from campylobacter2 jejuni 45 d3dl3a1 not modelled 12.6 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TehB-like 46 d1m2ka_ not modelled 12.2 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 47 d1gsaa1 not modelled 12.2 15 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Prokaryotic glutathione synthetase, N-terminal domain 48 d1v6sa_ not modelled 11.8 20 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 49 d3bb6a1 not modelled 11.6 8 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TehB-like 50 d1hdia_ not modelled 11.5 26 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 51 d1pj3a1 not modelled 11.4 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 52 d1ig4a_ not modelled 11.1 29 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:Methyl-CpG-binding domain, MBD 53 d1ltka_ not modelled 10.8 26 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 54 d1phpa_ not modelled 10.7 31 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 55 d2qwva1 not modelled 10.6 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 56 d2fvka1 not modelled 10.3 25 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 57 c2yvaB_ not modelled 10.1 17 PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa 58 d2o3aa1 not modelled 9.8 25 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 59 d1ddza2 not modelled 9.3 56 Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab 60 d1qk9a_ not modelled 9.2 36 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:Methyl-CpG-binding domain, MBD 61 c2k1lB_ not modelled 9.2 45 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 62 c2k1kA_ not modelled 9.2 45 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 63 c2k1kB_ not modelled 9.2 45 PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3 64 c2k1lA_ not modelled 9.2 45 PDB header:signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 1; PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3 65 c3lf2B_ not modelled 9.1 18 PDB header:oxidoreductase Chain: B: PDB Molecule:short chain oxidoreductase q9hya2; PDBTitle: nadph bound structure of the short chain oxidoreductase q9hya2 from2 pseudomonas aeruginosa pao1 containing an atypical catalytic center 66 c3ff4A_ not modelled 9.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein chu_1412 67 c1gshA_ not modelled 8.9 15 PDB header:glutathione biosynthesis ligase Chain: A: PDB Molecule:glutathione biosynthetic ligase; PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5 68 d1ddza1 not modelled 8.9 78 Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab 69 d1ub1a_ not modelled 8.8 36 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:Methyl-CpG-binding domain, MBD 70 c3ue9A_ not modelled 8.8 18 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of adenylosuccinate synthetase (ampsase) (pura) from2 burkholderia thailandensis 71 c2yh5A_ not modelled 8.7 21 PDB header:lipid binding protein Chain: A: PDB Molecule:dapx protein; PDBTitle: structure of the c-terminal domain of bamc 72 c3majA_ not modelled 8.7 24 PDB header:dna binding protein Chain: A: PDB Molecule:dna processing chain a; PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009 73 c3q3vA_ not modelled 8.6 33 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. 74 c1ddzA_ not modelled 8.3 78 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: x-ray structure of a beta-carbonic anhydrase from the red2 alga, porphyridium purpureum r-1 75 c3eh0C_ not modelled 8.1 22 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli 76 c3lasA_ not modelled 8.1 22 PDB header:lyase Chain: A: PDB Molecule:putative carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase from streptococcus mutans to2 1.4 angstrom resolution 77 d2cqaa1 not modelled 8.0 15 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 78 d2qmwa1 not modelled 8.0 10 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 79 d2rhca1 not modelled 8.0 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 80 d1a5ca_ not modelled 8.0 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 81 d3c2wa2 not modelled 7.8 13 Fold:Profilin-like Superfamily:GAF domain-like Family:Phytochrome-specific domain 82 d2dsma1 not modelled 7.7 43 Fold:YqaI-like Superfamily:YqaI-like Family:YqaI-like 83 c3eyxB_ not modelled 7.6 22 PDB header:lyase Chain: B: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase nce103 from2 saccharomyces cerevisiae 84 d2a9va1 not modelled 7.6 8 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 85 d2do3a1 not modelled 7.5 26 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 86 c2q2qG_ not modelled 7.5 14 PDB header:oxidoreductase Chain: G: PDB Molecule:beta-d-hydroxybutyrate dehydrogenase; PDBTitle: structure of d-3-hydroxybutyrate dehydrogenase from pseudomonas putida 87 d1xfba1 not modelled 7.5 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 88 d2fr1a1 not modelled 7.5 7 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 89 c3nkdB_ not modelled 7.4 29 PDB header:immune system Chain: B: PDB Molecule:crispr-associated protein cas1; PDBTitle: structure of crisp-associated protein cas1 from escherichia coli str.2 k-12 90 c2iz6A_ not modelled 7.3 18 PDB header:metal transport Chain: A: PDB Molecule:molybdenum cofactor carrier protein; PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein 91 c2pc4B_ not modelled 7.3 19 PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: crystal structure of fructose-bisphosphate aldolase from plasmodium2 falciparum in complex with trap-tail determined at 2.4 angstrom3 resolution 92 d2pw6a1 not modelled 7.1 9 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 93 d1gxha_ not modelled 7.1 40 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 94 c2d7uA_ not modelled 7.1 11 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of hypothetical adenylosuccinate synthetase, ph04382 from pyrococcus horikoshii ot3 95 c3ggsA_ not modelled 7.0 26 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: human purine nucleoside phosphorylase double mutant e201q,n243d2 complexed with 2-fluoro-2'-deoxyadenosine 96 c2ph3B_ not modelled 6.9 18 PDB header:oxidoreductase Chain: B: PDB Molecule:3-oxoacyl-[acyl carrier protein] reductase; PDBTitle: crystal structure of 3-oxoacyl-[acyl carrier protein] reductase2 ttha0415 from thermus thermophilus 97 d2vlqa1 not modelled 6.8 20 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 98 d1zaia1 not modelled 6.8 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 99 d1v2xa_ not modelled 6.8 15 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0