Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP52143
DateWed Jan 25 15:20:58 GMT 2012
Unique Job ID294182ceab3e8127

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3sljA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
Confidence and coverage
Confidence:100.0% Coverage: 19%
293 residues ( 19% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
1266 residues ( 83%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNRTSPYYCRRSVLSLLISALIYAPPGMAAFTTNVIGVVNDETVDGNQKVDERGTTNNTH
Secondary structure 











SS confidence 



























































Disorder  ??????????
?????



?????????


??
?
??
?









?







Disorder confidence 



























































 
   .........70.........80.........90.........100.........110.........120
Sequence  IINHGQQNVHGGVSNGSLIESGGYQDIGSHNNFVGQANNTTINGGRQSIHDGGISTGTTI
Secondary structure 






SS confidence 



























































Disorder 













??


?






???????????






?


???
???



Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  ESGNQDVYKGGISNGTTIKGGASRVEGGSANGILIDGGSQIVKVQGHADGTTINKSGSQD
Secondary structure 







SS confidence 



























































Disorder 

????

?


??







?














??


??


??









Disorder confidence 



























































 
   .........190.........200.........210.........220.........230.........240
Sequence  VVQGSLATNTTINGGRQYVEQSTVETTTIKNGGEQRVYESRALDTTIEGGTQSLNSKSTA
Secondary structure 


SS confidence 



























































Disorder 

??
????





??


?

???






???
???????









???
??
Disorder confidence 



























































 
   .........250.........260.........270.........280.........290.........300
Sequence  KNTHIYSGGTQIVDNTSTSDVIEVYSGGVLDVRGGTATNVTQHDGAILKTNTNGTTVSGT
Secondary structure 




SS confidence 



























































Disorder  ??





???

??


??











?



??






?








?


Disorder confidence 



























































 
   .........310.........320.........330.........340.........350.........360
Sequence  NSEGAFSIHNHVADNVLLENGGHLDINAYGSANKTIIKDKGTMSVLTNAKADATRIDNGG
Secondary structure 







SS confidence 



























































Disorder 


?








?












?































Disorder confidence 



























































 
   .........370.........380.........390.........400.........410.........420
Sequence  VMDVAGNATNTIINGGTQNINNYGIATGTNINSGTQNIKSGGKADTTIISSGSRQVVEKD
Secondary structure 





SS confidence 



























































Disorder 


















??



??















???










??
Disorder confidence 



























































 
   .........430.........440.........450.........460.........470.........480
Sequence  GTAIGSNISAGGSLIVYTGGIAHGVNQETGSALVANTGAGTDIEGYNKLSHFTITGGEAN
Secondary structure 





SS confidence 



























































Disorder 


??











????????
??????

?




????



???







?
Disorder confidence 



























































 
   .........490.........500.........510.........520.........530.........540
Sequence  YVVLENTGELTVVAKTSAKNTTIDTGGKLIVQKEAKTDSTRLNNGGVLEVQDGGEAKHVE
Secondary structure 







SS confidence 



























































Disorder 







???????


?

















?





















Disorder confidence 



























































 
   .........550.........560.........570.........580.........590.........600
Sequence  QQSGGALIASTTSGTLIEGTNSYGDAFYIRNSEAKNVVLENAGSLTVVTGSRAVDTIINA
Secondary structure 
SS confidence 



























































Disorder 























??


??

???











??
????


?
Disorder confidence 



























































 
   .........610.........620.........630.........640.........650.........660
Sequence  NGKMDVYGKDVGTVLNSAGTQTIYASATSDKANIKGGKQTVYGLATEANIESGEQIVDGG
Secondary structure 



SS confidence 



























































Disorder  ???


?




















??












?????








?

Disorder confidence 



























































 
   .........670.........680.........690.........700.........710.........720
Sequence  STEKTHINGGTQTVQNYGKAINTDIVSGLQQIMANGTAEGSIINGGSQVVNEGGLAENSV
Secondary structure 




SS confidence 



























































Disorder 
??
























?



?


?











??

????

Disorder confidence 



























































 
   .........730.........740.........750.........760.........770.........780
Sequence  LNDGGTLDVREKGSATGIQQSSQGALVATTRATRVTGTRADGVAFSIEQGAANNILLANG
Secondary structure 







SS confidence 



























































Disorder 
























?

???????

?

?
???














Disorder confidence 



























































 
   .........790.........800.........810.........820.........830.........840
Sequence  GVLTVESDTSSDKTQVNMGGREIVKTKATATGTTLTGGEQIVEGVANETTINDGGIQTVS
Secondary structure 






SS confidence 



























































Disorder 









??

















?



?????



?
??











Disorder confidence 



























































 
   .........850.........860.........870.........880.........890.........900
Sequence  ANGEAIKTKINEGGTLTVNDNGKATDIVQNSGAALQTSTANGIEISGTHQYGTFSISGNL
Secondary structure 







SS confidence 



























































Disorder 




???














??








????
??



?
??????


?


Disorder confidence 



























































 
   .........910.........920.........930.........940.........950.........960
Sequence  ATNMLLENGGNLLVLAGTEARDSTVGKGGAMQNLGQDSATKVNSGGQYTLGRSKDEFQAL
Secondary structure 






SS confidence 



























































Disorder  ??

































?
?














??????
Disorder confidence 



























































 
   .........970.........980.........990.........1000.........1010.........1020
Sequence  ARAEDLQVAGGTAIVYAGTLADASVSGATGSLSLMTPRDNVTPVKLEGAVRITDSATLTL
Secondary structure 









SS confidence 



























































Disorder  ????








??



???????










????
?
















Disorder confidence 



























































 
   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  GNGVDTTLADLTAASRGSVWLNSNNSCAGTSNCEYRVNSLLLNDGDVYLSAQTAAPATTN
Secondary structure 















SS confidence 



























































Disorder 


???








??


??
???????????

??
?
?







?????????
Disorder confidence 



























































 
   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  GIYNTLTTNELSGSGNFYLHTNVAGSRGDQLVVNNNATGNFKIFVQDTGVSPQSDDAMTL
Secondary structure 






















SS confidence 



























































Disorder 





















?

























??????




Disorder confidence 



























































 
   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  VKTGGGDASFTLGNTGGFVDLGTYEYVLKSDGNSNWNLTNDVKPNPDPIPNPKPDPKPDP
Secondary structure 































SS confidence 



























































Disorder 










?

?
















????




???????????????????
Disorder confidence 



























































 
   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  KPDPNPKPDPTPDPTPTPVPEKRITPSTAAVLNMAATLPLVFDAELNSIRERLNIMKASP
Secondary structure 

































SS confidence 



























































Disorder  ??????????????????????????????


?








??





?????????
Disorder confidence 



























































 
   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  HNNNVWGATYNTRNNVTTDAGAGFEQTLTGMTVGIDSRNDIPEGITTLGAFMGYSHSHIG
Secondary structure 













SS confidence 



























































Disorder  ????






????????????
































????
Disorder confidence 



























































 
   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  FDRGGHGSVGSYSLGGYASWEHESGFYLDGVVKLNRFKSNVAGKMSSGGAANGSYHSNGL
Secondary structure 









SS confidence 



























































Disorder  ?????


?

































???????????





Disorder confidence 



























































 
   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  GGHIETGMRFTDGNWNLTPYASLTGFTADNPEYHLSNGMKSKSVDTRSIYRELGATLSYN
Secondary structure 











SS confidence 



























































Disorder 





























?


?????



????












Disorder confidence 



























































 
   .........1450.........1460.........1470.........1480.........1490.........1500
Sequence  MRLGNGMEVEPWLKAAVRKEFVDDNRVKVNSDGNFVNYLSGRRGIYQAGIKASFSSTLSG
Secondary structure 


























SS confidence 



























































Disorder 



?



















?


????????

??


















Disorder confidence 



























































 
   .........1510.........1520......
Sequence  HLGVGYSHSAGVESPWNAVAGVNWSF
Secondary structure 




SS confidence 

























Disorder 






???????










?
Disorder confidence 

























 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3slj chain A

3D model

Region: 1226 - 1526
Aligned: 293
Modelled: 301
Confidence: 100.0%
Identity: 16%
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant

Phyre2

PDB 3aeh chain B

3D model

Region: 1227 - 1526
Aligned: 266
Modelled: 288
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp

Phyre2

PDB 3qq2 chain C

3D model

Region: 1261 - 1526
Aligned: 248
Modelled: 252
Confidence: 100.0%
Identity: 25%
PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka

Phyre2

PDB 1uyn chain X

3D model

Region: 1234 - 1526
Aligned: 272
Modelled: 293
Confidence: 100.0%
Identity: 17%
Fold: Transmembrane beta-barrels
Superfamily: Autotransporter
Family: Autotransporter

Phyre2

PDB 2qom chain B

3D model

Region: 1249 - 1526
Aligned: 261
Modelled: 278
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.

Phyre2

PDB 3kvn chain A

3D model

Region: 1227 - 1526
Aligned: 291
Modelled: 300
Confidence: 100.0%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa

Phyre2

PDB 1dab chain A

3D model

Region: 647 - 1185
Aligned: 521
Modelled: 525
Confidence: 99.9%
Identity: 16%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pectin lyase-like
Family: Virulence factor P.69 pertactin

Phyre2

PDB 3ml3 chain A

3D model

Region: 1036 - 1183
Aligned: 142
Modelled: 144
Confidence: 99.6%
Identity: 21%
PDB header:protein transport
Chain: A: PDB Molecule:outer membrane protein icsa autotransporter;
PDBTitle: crystal structure of the icsa autochaperone region

Phyre2

PDB 3h09 chain B

3D model

Region: 527 - 1178
Aligned: 640
Modelled: 652
Confidence: 99.6%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:immunoglobulin a1 protease;
PDBTitle: the structure of haemophilus influenzae iga1 protease

Phyre2

PDB 1p4t chain A

3D model

Region: 1342 - 1526
Aligned: 149
Modelled: 172
Confidence: 99.3%
Identity: 23%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2k0l chain A

3D model

Region: 1342 - 1526
Aligned: 171
Modelled: 181
Confidence: 99.3%
Identity: 13%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.

Phyre2

PDB 1qjp chain A

3D model

Region: 1342 - 1526
Aligned: 134
Modelled: 153
Confidence: 99.2%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 1g90 chain A

3D model

Region: 1343 - 1526
Aligned: 160
Modelled: 179
Confidence: 99.2%
Identity: 16%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 3nb3 chain C

3D model

Region: 1342 - 1526
Aligned: 134
Modelled: 151
Confidence: 99.2%
Identity: 14%
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

Phyre2

PDB 3syj chain A

3D model

Region: 527 - 1178
Aligned: 641
Modelled: 652
Confidence: 99.1%
Identity: 12%
PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion and penetration protein autotransporter;
PDBTitle: crystal structure of the haemophilus influenzae hap adhesin

Phyre2

PDB 2x27 chain X

3D model

Region: 1341 - 1526
Aligned: 179
Modelled: 186
Confidence: 99.1%
Identity: 12%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa

Phyre2

PDB 3qra chain A

3D model

Region: 1350 - 1526
Aligned: 146
Modelled: 160
Confidence: 99.0%
Identity: 14%
PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis

Phyre2

PDB 2f1t chain B

3D model

Region: 1346 - 1526
Aligned: 160
Modelled: 181
Confidence: 98.9%
Identity: 14%
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw

Phyre2

PDB 2jmm chain A

3D model

Region: 1342 - 1526
Aligned: 146
Modelled: 153
Confidence: 98.9%
Identity: 12%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein

Phyre2

PDB 1qj8 chain A

3D model

Region: 1378 - 1526
Aligned: 131
Modelled: 149
Confidence: 98.8%
Identity: 18%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2zj6 chain A

3D model

Region: 30 - 239
Aligned: 210
Modelled: 210
Confidence: 98.6%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase

Phyre2

PDB 2qub chain G

3D model

Region: 72 - 336
Aligned: 265
Modelled: 265
Confidence: 98.3%
Identity: 11%
PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens

Phyre2
1

c3sljA_
2

c3aehB_
3

c3qq2C_
4

d1uynx_
5

c2qomB_
6

c3kvnA_
7

d1daba_
8

c3ml3A_
9

c3h09B_
10

d1p4ta_
11

c2k0lA_
12

d1qjpa_
13

d1g90a_
14

c3nb3C_
15

c3syjA_
16

c2x27X_
17

c3qraA_
18

c2f1tB_
19

c2jmmA_
20

d1qj8a_
21

c2zj6A_
22



23

c2qubG_
24



25



26



27



28



29



30



31



32



33



34



35



36



37



38



39



40



41



42



43



44



45



46



47



48



49



50



51



52



53



54



55



56



57



58



59



60



61



62



63



64



65



66



67



68



69



70



71



72



73



74



75






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3sljA_



100.0 16 PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
2c3aehB_



100.0 20 PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp
3c3qq2C_



100.0 25 PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
4d1uynx_



100.0 17 Fold:Transmembrane beta-barrels
Superfamily:Autotransporter
Family:Autotransporter
5c2qomB_



100.0 17 PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.
6c3kvnA_



100.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa
7d1daba_



99.9 16 Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Virulence factor P.69 pertactin
8c3ml3A_



99.6 21 PDB header:protein transport
Chain: A: PDB Molecule:outer membrane protein icsa autotransporter;
PDBTitle: crystal structure of the icsa autochaperone region
9c3h09B_



99.6 17 PDB header:hydrolase
Chain: B: PDB Molecule:immunoglobulin a1 protease;
PDBTitle: the structure of haemophilus influenzae iga1 protease
10d1p4ta_



99.3 23 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
11c2k0lA_



99.3 13 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
12d1qjpa_



99.2 13 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
13d1g90a_



99.2 16 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
14c3nb3C_



99.2 14 PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
15c3syjA_



99.1 12 PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion and penetration protein autotransporter;
PDBTitle: crystal structure of the haemophilus influenzae hap adhesin
16c2x27X_



99.1 12 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
17c3qraA_



99.0 14 PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
18c2f1tB_



98.9 14 PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw
19c2jmmA_



98.9 12 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein
20d1qj8a_



98.8 18 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
21c2zj6A_



98.6 18 PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase
22c2iwvD_



not modelled 98.4 13 PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
23c2qubG_



98.3 11 PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens
24c2lhfA_



not modelled 98.3 21 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles
25c2wjqA_



not modelled 98.1 10 PDB header:transport protein
Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel
PDBTitle: nanc porin structure in hexagonal crystal form.
26c2x4mD_



not modelled 97.8 12 PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla
27c1satA_



not modelled 97.6 13 PDB header:hydrolase (serine protease)
Chain: A: PDB Molecule:serratia protease;
PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens
28c3a2rX_



not modelled 97.6 10 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein ii;
PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis
29c1om8A_



not modelled 97.3 11 PDB header:hydrolase
Chain: A: PDB Molecule:serralysin;
PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta
30d2fgqx1



not modelled 97.2 18 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
31c1k7qA_



not modelled 97.1 11 PDB header:hydrolase
Chain: A: PDB Molecule:secreted protease c;
PDBTitle: prtc from erwinia chrysanthemi: e189a mutant
32d1g9ka1



not modelled 96.9 10 Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
33d2vdfa1



not modelled 96.9 14 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane adhesin/invasin OpcA
34c3dwoX_



not modelled 96.8 14 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
35d1kapp1



not modelled 96.7 16 Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
36d1i78a_



not modelled 96.6 13 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane protease OMPT
37d1k7ia1



not modelled 96.5 15 Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
38d1t16a_



not modelled 96.3 13 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
39c1jiwP_



not modelled 96.3 14 PDB header:hydrolase/hyrolase inhibitor
Chain: P: PDB Molecule:alkaline metalloproteinase;
PDBTitle: crystal structure of the apr-aprin complex
40d3prna_



not modelled 96.2 12 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
41d2pora_



not modelled 96.2 15 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
42d1sata1



not modelled 95.8 13 Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
43c2agmA_



not modelled 95.7 11 PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: solution structure of the r-module from alge4
44d2zfga1



not modelled 95.7 13 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
45d1osma_



not modelled 95.5 12 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
46c3nsgA_



not modelled 95.3 14 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein f;
PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi
47d1phoa_



not modelled 94.9 11 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
48c3brzA_



not modelled 93.1 16 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
49c3bryB_



not modelled 90.7 12 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
50c2ervA_



not modelled 90.6 17 PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein paer03002360;
PDBTitle: crystal structure of the outer membrane enzyme pagl
51c1xkwA_



not modelled 86.6 10 PDB header:membrane protein
Chain: A: PDB Molecule:fe(iii)-pyochelin receptor;
PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa
52c3p4gD_



not modelled 83.9 12 PDB header:antifreeze protein
Chain: D: PDB Molecule:antifreeze protein;
PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium
53c2grxB_



not modelled 83.8 14 PDB header:metal transport
Chain: B: PDB Molecule:ferrichrome-iron receptor;
PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome
54c3qlbA_



not modelled 72.6 14 PDB header:metal transport
Chain: A: PDB Molecule:enantio-pyochelin receptor;
PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin
55c2iahA_



not modelled 68.4 12 PDB header:membrane protein
Chain: A: PDB Molecule:ferripyoverdine receptor;
PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine.
56c1xkhC_



not modelled 61.9 13 PDB header:membrane protein
Chain: C: PDB Molecule:ferripyoverdine receptor;
PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine
57c2hdiA_



not modelled 54.1 11 PDB header:protein transport,antimicrobial protein
Chain: A: PDB Molecule:colicin i receptor;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
58c2o4vA_



not modelled 48.5 12 PDB header:membrane protein
Chain: A: PDB Molecule:porin p;
PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane
59c3jtyB_



not modelled 37.7 12 PDB header:transport protein
Chain: B: PDB Molecule:benf-like porin;
PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5
60d1by5a_



not modelled 27.6 11 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
61d2gufa1



not modelled 25.4 10 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
62d2gr7a1



not modelled 21.1 16 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
63c2gr7C_



not modelled 21.1 16 PDB header:membrane protein
Chain: C: PDB Molecule:adhesin;
PDBTitle: hia 992-1098
64c3fy3A_



not modelled 15.4 10 PDB header:toxin
Chain: A: PDB Molecule:hemolysin;
PDBTitle: crystal structure of truncated hemolysin a from p. mirabilis
65d2gr8a1



not modelled 13.0 19 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
66d1k18a_



not modelled 11.6 27 Fold:Zinc finger domain of DNA polymerase-alpha
Superfamily:Zinc finger domain of DNA polymerase-alpha
Family:Zinc finger domain of DNA polymerase-alpha
67c2y0hA_



not modelled 9.6 9 PDB header:transport protein
Chain: A: PDB Molecule:probable porin;
PDBTitle: crystal structure of pseudomonas aeruginosa opdl
68c1al0B_



not modelled 9.6 36 PDB header:virus
Chain: B: PDB Molecule:scaffolding protein gpb;
PDBTitle: procapsid of bacteriophage phix174
69c3emoA_



not modelled 8.8 14 PDB header:membrane protein/cell adhesion
Chain: A: PDB Molecule:hia (adhesin);
PDBTitle: crystal structure of transmembrane hia 973-1098
70d3bbda1



not modelled 7.1 32 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:EMG1/NEP1-like
71d1zszc1



not modelled 6.3 17 Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
72d1jmxa4



not modelled 6.1 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5
73c2qtkB_



not modelled 5.9 13 PDB header:membrane protein
Chain: B: PDB Molecule:probable porin;
PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa
74d1gmua2



not modelled 5.6 33 Fold:Ferredoxin-like
Superfamily:Urease metallochaperone UreE, C-terminal domain
Family:Urease metallochaperone UreE, C-terminal domain
75c3mjdA_



not modelled 5.6 32 PDB header:transferase
Chain: A: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: 1.9 angstrom crystal structure of orotate2 phosphoribosyltransferase (pyre) francisella tularensis.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0