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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3p4gD_ | PDB header: antifreeze protein | Chain: D: PDB Molecule: antifreeze protein; | PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium |
Added to library: Sat Apr 30 09:04:14 2011 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | F | G | F | W | D | G | T | S | T | Q | A | E | I | T | H | S | F | D | H | Y | I | G | S | A | F | D | A | S | N | N | N | V | A | V | T | G | N | V | S | A | T | L | N | V | L | A | G | D | D | K | V | S | I | D | G | N | V | E | D | V | L | V | A | A | N | V | A | V | L | D |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | T | T | T | S | ![]() | ![]() | ![]() | S | S | B | S | S | ![]() | ![]() | ![]() | ![]() | S | S | B | S | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | S | S | B | S | T | T | S | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | M | G | T | G | N | D | Q | L | Y | V | A | G | D | V | L | G | K | I | D | A | G | T | G | N | D | E | I | Y | I | K | G | D | V | S | A | A | V | D | A | G | T | G | N | D | E | V | Y | I | G | G | N | L | S | G | D | L | D | A | G | T | D | N | D | N | I | Q | I | G | G | D |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | ![]() | ![]() | ![]() | ![]() | S | S | B | S | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | S | S | B | S | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | S | S | B | S | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | S | S |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Sequence | V | N | A | A | L | N | A | G | T | G | N | D | N | L | I | I | G | H | D | V | S | G | I | V | N | M | G | T | D | N | D | T | V | E | V | G | R | T | I | N | A | S | G | K | V | L | L | D | T | G | D | D | S | L | L | V | S | G | D | L | F | G | E | V | D | G | G | T | G | N |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | B | S | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | S | S | B | S | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | S | S | B | T | T | ![]() | ![]() | ![]() | S | S | S | ![]() | ![]() | ![]() | ![]() | S | S | B | S | S | ![]() | ![]() | ![]() | S | S |   | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
Sequence | D | T | I | I | I | A | G | K | V | S | G | N | I | Q | G | G | T | G | N | D | I | V | R | V | Q | S | Q | V | W | A | E | A | N | I | S | L | G | T | G | D | D | V | L | I | V | E | H | E | L | H | G | T | V | A | G | N | E | G | D | D | S | I | Y | L | K | F | Y | T | K | E |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | S | B | S | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | S | B | T | T | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | S | B | S | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . |
Sequence | Q | Y | N | N | N | S | D | L | R | N | R | V | A | N | F | E | H | I | R | V | S | D | G | V | V | K | G | S | P | A | D | F | ||||||||||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | S |
Download: | PDB structure | FASTA sequence |
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