Email l.a.kelley@imperial.ac.uk Description P43671 Date Thu Jan 5 12:02:24 GMT 2012 Unique Job ID 1f6fcba761d999b9

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pj5a1 93.4 17 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 2 d1v5va1 90.3 17 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 3 d1wosa1 87.9 17 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 4 c1v5vA_ 84.2 17 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution 5 c1qu7A_ 78.6 9 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor 6 c3girA_ 75.4 15 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of glycine cleavage system2 aminomethyltransferase t from bartonella henselae 7 c1worA_ 75.3 18 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of t-protein of the glycine cleavage2 system 8 c2wpqA_ 74.7 5 PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) 9 c2j5uB_ 73.9 16 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 10 c1ei3C_ 72.9 13 PDB header: PDB COMPND: 11 c1yx2B_ 72.6 23 PDB header:transferase Chain: B: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of the probable aminomethyltransferase2 from bacillus subtilis 12 c1pj6A_ 68.4 17 PDB header:oxidoreductase Chain: A: PDB Molecule:n,n-dimethylglycine oxidase; PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid 13 c2ieqC_ 67.9 17 PDB header:viral protein Chain: C: PDB Molecule:spike glycoprotein; PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein 14 c2qf4A_ 64.9 15 PDB header:structural protein Chain: A: PDB Molecule:cell shape determining protein mrec; PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form) 15 d1vloa1 63.6 18 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 16 c3tfhB_ 58.3 14 PDB header:transferase Chain: B: PDB Molecule:gcvt-like aminomethyltransferase protein; PDBTitle: dmsp-dependent demethylase from p. ubique - apo 17 d1c99a_ 57.5 28 Fold:Transmembrane helix hairpin Superfamily:F1F0 ATP synthase subunit C Family:F1F0 ATP synthase subunit C 18 c2d4yA_ 53.0 11 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 19 c3g67A_ 51.8 5 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima 20 d1txka2 50.8 24 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:MdoG-like 21 c1kmiZ_ not modelled 49.0 12 PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez 22 c1wsrA_ not modelled 48.0 15 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of human t-protein of glycine cleavage2 system 23 d1fftb2 not modelled 46.5 21 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 24 c1txkA_ not modelled 46.2 24 PDB header:biosynthetic protein Chain: A: PDB Molecule:glucans biosynthesis protein g; PDBTitle: crystal structure of escherichia coli opgg 25 c3lnrA_ not modelled 40.7 13 PDB header:signaling protein Chain: A: PDB Molecule:aerotaxis transducer aer2; PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2 26 d1vp7b_ not modelled 36.6 17 Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like 27 c2ch7A_ not modelled 35.6 7 PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima 28 c1wyyB_ not modelled 35.1 15 PDB header:viral protein Chain: B: PDB Molecule:e2 glycoprotein; PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein 29 c1ei3E_ not modelled 35.0 9 PDB header: PDB COMPND: 30 c1deqF_ not modelled 31.7 6 PDB header: PDB COMPND: 31 c2vs0B_ not modelled 31.2 9 PDB header:cell invasion Chain: B: PDB Molecule:virulence factor esxa; PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa 32 d1jz8a3 not modelled 30.3 11 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 33 c3gvmA_ not modelled 30.1 8 PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae 34 d1eq1a_ not modelled 29.0 10 Fold:Apolipophorin-III Superfamily:Apolipophorin-III Family:Apolipophorin-III 35 d1yq2a3 not modelled 27.6 15 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 36 d1szia_ not modelled 27.3 11 Fold:Four-helical up-and-down bundle Superfamily:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain Family:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain 37 c1kqsA_ not modelled 27.0 19 PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l2; PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis 38 d1ucua_ not modelled 26.9 8 Fold:Phase 1 flagellin Superfamily:Phase 1 flagellin Family:Phase 1 flagellin 39 d1g4us1 not modelled 25.6 19 Fold:Four-helical up-and-down bundle Superfamily:Bacterial GAP domain Family:Bacterial GAP domain 40 d1v58a2 not modelled 25.5 17 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 41 c1deqO_ not modelled 24.7 14 PDB header: PDB COMPND: 42 c2kebA_ not modelled 24.6 21 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase subunit alpha b; PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit 43 c3k8wA_ not modelled 22.6 10 PDB header:structural protein Chain: A: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c45 44 c3izcN_ not modelled 22.4 16 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 45 c2kbbA_ not modelled 21.9 11 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin rod domain, 1655-1822 46 d1im3d_ not modelled 21.5 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytomegalovirus protein US2 47 d2axte1 not modelled 21.3 15 Fold:Single transmembrane helix Superfamily:Cytochrome b559 subunits Family:Cytochrome b559 subunits 48 c2d4xA_ not modelled 21.3 6 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 3; PDBTitle: crystal structure of a 26k fragment of hap3 (flgl) 49 d1gtra1 not modelled 21.0 16 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain 50 c2nrjA_ not modelled 21.0 15 PDB header:toxin Chain: A: PDB Molecule:hbl b protein; PDBTitle: crystal structure of hemolysin binding component from2 bacillus cereus 51 d1lvfa_ not modelled 20.4 11 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 52 c2gl2B_ not modelled 20.2 14 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 53 c3ghgK_ not modelled 18.4 8 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 54 c1x31A_ not modelled 18.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 55 c3o0lB_ not modelled 18.1 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 56 d1dowa_ not modelled 17.9 11 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 57 c4a19F_ not modelled 17.4 19 PDB header:ribosome Chain: F: PDB Molecule:rpl14; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2. 58 c3k8vB_ not modelled 17.0 10 PDB header:structural protein Chain: B: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c20 59 d1wrda1 not modelled 16.9 18 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 60 d2zjrs1 not modelled 16.3 20 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like 61 d1bhua_ not modelled 16.1 23 Fold:gamma-Crystallin-like Superfamily:gamma-Crystallin-like Family:Streptomyces metalloproteinase inhibitor, SMPI 62 d1dova_ not modelled 15.5 11 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 63 c1vloA_ not modelled 15.4 18 PDB header:transferase Chain: A: PDB Molecule:aminomethyltransferase; PDBTitle: crystal structure of aminomethyltransferase (t protein;2 tetrahydrofolate-dependent) of glycine cleavage system (np417381)3 from escherichia coli k12 at 1.70 a resolution 64 c3o5aB_ not modelled 15.4 18 PDB header:oxidoreductase Chain: B: PDB Molecule:diheme cytochrome c napb; PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids 65 c1rkeA_ not modelled 14.9 10 PDB header:cell adhesion, structural protein Chain: A: PDB Molecule:vinculin; PDBTitle: human vinculin head (1-258) in complex with human vinculin2 tail (879-1066) 66 c3ojaB_ not modelled 14.8 10 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 67 d2cp5a1 not modelled 14.7 11 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 68 d1bhga2 not modelled 14.6 16 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 69 c3ls1A_ not modelled 13.4 18 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 70 d1pa4a_ not modelled 13.0 44 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 71 d1feua_ not modelled 13.0 14 Fold:Ribosomal protein L25-like Superfamily:Ribosomal protein L25-like Family:Ribosomal protein L25-like 72 c3iz5N_ not modelled 12.8 14 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 73 c2dq3A_ not modelled 12.8 11 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 74 c2kncA_ not modelled 12.6 35 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 75 c1vlyA_ not modelled 12.6 10 PDB header:transferase Chain: A: PDB Molecule:unknown protein from 2d-page; PDBTitle: crystal structure of a putative aminomethyltransferase (ygfz) from2 escherichia coli at 1.30 a resolution 76 c1zvzA_ not modelled 12.6 9 PDB header:protein binding Chain: A: PDB Molecule:vinculin; PDBTitle: vinculin head (0-258) in complex with the talin rod residue2 820-844 77 d2cp2a1 not modelled 11.9 16 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 78 d1kkga_ not modelled 11.8 19 Fold:Alpha-lytic protease prodomain-like Superfamily:Ribosome-binding factor A, RbfA Family:Ribosome-binding factor A, RbfA 79 c3nmbA_ not modelled 11.0 64 PDB header:hydrolase Chain: A: PDB Molecule:putative sugar hydrolase; PDBTitle: crystal structure of a putative sugar hydrolase (bacova_03189) from2 bacteroides ovatus at 2.40 a resolution 80 d1wa8a1 not modelled 10.8 11 Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like 81 d1qoua_ not modelled 10.5 11 Fold:PEBP-like Superfamily:PEBP-like Family:Phosphatidylethanolamine binding protein 82 c3hd7A_ not modelled 10.4 8 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 83 d2coza1 not modelled 10.4 14 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 84 d1sj8a2 not modelled 10.4 10 Fold:I/LWEQ domain Superfamily:I/LWEQ domain Family:I/LWEQ domain 85 c1exdA_ not modelled 10.3 19 PDB header:ligase/rna Chain: A: PDB Molecule:glutaminyl-trna synthetase; PDBTitle: crystal structure of a tight-binding glutamine trna bound2 to glutamine aminoacyl trna synthetase 86 c1m57H_ not modelled 10.1 18 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 87 c3dshA_ not modelled 10.0 17 PDB header:dna binding protein Chain: A: PDB Molecule:interferon regulatory factor 5; PDBTitle: crystal structure of dimeric interferon regulatory factor 5 (irf-5)2 transactivation domain 88 c1urqC_ not modelled 9.9 14 PDB header:transport protein Chain: C: PDB Molecule:synaptosomal-associated protein 25; PDBTitle: crystal structure of neuronal q-snares in complex with2 r-snare motif of tomosyn 89 d1t01a1 not modelled 9.9 15 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 90 c3lw9B_ not modelled 9.8 24 PDB header:protein transport Chain: B: PDB Molecule:invasion protein inva; PDBTitle: structure of a cytoplasmic domain of salmonella inva 91 c1zoqA_ not modelled 9.8 25 PDB header:transcription/transferase Chain: A: PDB Molecule:interferon regulatory factor 3; PDBTitle: irf3-cbp complex 92 c2kzfA_ not modelled 9.7 13 PDB header:ribosomal protein Chain: A: PDB Molecule:ribosome-binding factor a; PDBTitle: solution nmr structure of the thermotoga maritima protein tm0855 a2 putative ribosome binding factor a 93 c3h3lB_ not modelled 9.7 38 PDB header:hydrolase Chain: B: PDB Molecule:putative sugar hydrolase; PDBTitle: crystal structure of putative sugar hydrolase (yp_001304206.1) from2 parabacteroides distasonis atcc 8503 at 1.59 a resolution 94 c2dnxA_ not modelled 9.6 16 PDB header:transport protein Chain: A: PDB Molecule:syntaxin-12; PDBTitle: solution structure of rsgi ruh-063, an n-terminal domain of2 syntaxin 12 from human cdna 95 d1wgba_ not modelled 9.5 13 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:NADH:FMN oxidoreductase-like 96 c3hbkA_ not modelled 9.4 55 PDB header:hydrolase Chain: A: PDB Molecule:putative glycosyl hydrolase; PDBTitle: crystal structure of putative glycosyl hydrolase, was domain of2 unknown function (duf1080) (yp_001302580.1) from parabacteroides3 distasonis atcc 8503 at 2.36 a resolution 97 c1cn3F_ not modelled 9.4 25 PDB header:viral protein Chain: F: PDB Molecule:fragment of coat protein vp2; PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry 98 c1pkvB_ not modelled 9.4 13 PDB header:transferase Chain: B: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin 99 c1pkvA_ not modelled 9.4 13 PDB header:transferase Chain: A: PDB Molecule:riboflavin synthase alpha chain; PDBTitle: the n-terminal domain of riboflavin synthase in complex with2 riboflavin