Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	R	I	N	A	L	T	I	A	G	T	D	P	S	G	G	A	G	I	Q	A	D	L	K	T	F	S	A	L	G	A	Y	G	C	S	V	I	T	A	L	V	A	Q	N	T	R	G	V	Q	S	V	Y	R	I	E	P	D	F	V
Secondary structure
SS confidence
Disorder		?	?	?	?									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	A	Q	L	D	S	V	F	S	D	V	R	I	D	T	T	K	I	G	M	L	A	E	T	D	I	V	E	A	V	A	E	R	L	Q	R	Y	Q	I	Q	N	V	V	L	D	T	V	M	L	A	K	S	G	D	P	L	L	S	P	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	V	A	T	L	R	S	R	L	L	P	Q	V	S	L	I	T	P	N	L	P	E	A	A	A	L	L	D	A	P	H	A	R	T	E	Q	E	M	L	E	Q	G	R	S	L	L	A	M	G	C	G	A	V	L	M	K	G	G	H	L
Secondary structure
SS confidence
Disorder																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	D	E	Q	S	P	D	W	L	F	T	R	E	G	E	Q	R	F	T	A	P	R	I	M	T	K	N	T	H	G	T	G	C	T	L	S	A	A	L	A	A	L	R	P	R	H	T	N	W	A	D	T	V	Q	E	A	K	S	W	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Sequence		S	S	A	L	A	Q	A	D	T	L	E	V	G	H	G	I	G	P	V	H	H	F	H	A	W	W
Secondary structure
SS confidence
Disorder											?	?	?	?													?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jxh chain A Region: 1 - 266 Aligned: 248 Modelled: 262 Confidence: 100.0% Identity: 86% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Thiamin biosynthesis kinases Phyre2 PDB 3rm5 chain B Region: 2 - 265 Aligned: 253 Modelled: 264 Confidence: 100.0% Identity: 32% PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast Phyre2 PDB 2i5b chain C Region: 1 - 261 Aligned: 257 Modelled: 261 Confidence: 100.0% Identity: 36% PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution Phyre2 PDB 1ub0 chain A Region: 4 - 262 Aligned: 244 Modelled: 259 Confidence: 100.0% Identity: 52% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Thiamin biosynthesis kinases Phyre2 PDB 3mbj chain A Region: 2 - 257 Aligned: 256 Modelled: 256 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) Phyre2 PDB 3ibq chain A Region: 5 - 256 Aligned: 252 Modelled: 250 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp Phyre2 PDB 1vi9 chain A Region: 1 - 253 Aligned: 251 Modelled: 249 Confidence: 100.0% Identity: 16% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: PfkB-like kinase Phyre2 PDB 1lhp chain A Region: 5 - 249 Aligned: 244 Modelled: 245 Confidence: 100.0% Identity: 20% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: PfkB-like kinase Phyre2 PDB 2ddm chain A Region: 5 - 258 Aligned: 247 Modelled: 254 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution Phyre2 PDB 1kyh chain A Region: 2 - 260 Aligned: 233 Modelled: 245 Confidence: 100.0% Identity: 16% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: YjeF C-terminal domain-like Phyre2 PDB 2r3b chain A Region: 2 - 260 Aligned: 234 Modelled: 259 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution Phyre2 PDB 2ax3 chain A domain 1 Region: 2 - 253 Aligned: 225 Modelled: 230 Confidence: 100.0% Identity: 17% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: YjeF C-terminal domain-like Phyre2 PDB 2ax3 chain A Region: 2 - 243 Aligned: 214 Modelled: 228 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution Phyre2 PDB 3bgk chain A Region: 2 - 253 Aligned: 227 Modelled: 239 Confidence: 100.0% Identity: 16% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans Phyre2 PDB 3k5w chain A Region: 2 - 260 Aligned: 219 Modelled: 244 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori Phyre2 PDB 3dzv chain B Region: 62 - 255 Aligned: 181 Modelled: 194 Confidence: 99.8% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution Phyre2 PDB 1v8a chain A Region: 62 - 255 Aligned: 177 Modelled: 192 Confidence: 99.8% Identity: 18% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Thiamin biosynthesis kinases Phyre2 PDB 1ekq chain A Region: 62 - 257 Aligned: 175 Modelled: 196 Confidence: 99.8% Identity: 15% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Thiamin biosynthesis kinases Phyre2 PDB 2jg1 chain C Region: 1 - 246 Aligned: 227 Modelled: 233 Confidence: 99.8% Identity: 21% PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate Phyre2 PDB 2abq chain A domain 1 Region: 16 - 246 Aligned: 212 Modelled: 219 Confidence: 99.8% Identity: 20% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 1 d1jxha_ 2 c3rm5B_ 3 c2i5bC_ 4 d1ub0a_ 5 c3mbjA_ 6 c3ibqA_ 7 d1vi9a_ 8 d1lhpa_ 9 c2ddmA_ 10 d1kyha_ 11 c2r3bA_ 12 d2ax3a1 13 c2ax3A_ 14 c3bgkA_ 15 c3k5wA_ 16 c3dzvB_ 17 d1v8aa_ 18 d1ekqa_ 19 c2jg1C_ 20 d2abqa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1jxha_ 100.0 86 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 2 c3rm5B_ 100.0 32 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 3 c2i5bC_ 100.0 36 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 4 d1ub0a_ 100.0 52 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 5 c3mbjA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 6 c3ibqA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 7 d1vi9a_ 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 8 d1lhpa_ 100.0 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 9 c2ddmA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 10 d1kyha_ 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 11 c2r3bA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 12 d2ax3a1 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 13 c2ax3A_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 14 c3bgkA_ 100.0 16 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 15 c3k5wA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 16 c3dzvB_ 99.8 17 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 17 d1v8aa_ 99.8 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 18 d1ekqa_ 99.8 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 19 c2jg1C_ 99.8 21 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 20 d2abqa1 99.8 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 21 c3kzhA_ not modelled 99.7 20 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 22 c2jg5B_ not modelled 99.7 20 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 23 c3cqdB_ not modelled 99.7 19 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 24 c3nm3D_ not modelled 99.7 13 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 25 c2nwhA_ not modelled 99.7 21 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 26 d2f02a1 not modelled 99.6 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 27 c3looC_ not modelled 99.6 15 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 28 c2qhpA_ not modelled 99.6 13 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 29 d1rkda_ not modelled 99.6 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 30 d1bx4a_ not modelled 99.6 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 31 c2xtbA_ not modelled 99.6 11 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 32 c2qcvA_ not modelled 99.6 16 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 33 c3pl2D_ not modelled 99.6 15 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 34 d1vm7a_ not modelled 99.5 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 35 d1v19a_ not modelled 99.5 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 36 c3i3yB_ not modelled 99.5 21 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 37 c3julA_ not modelled 99.5 19 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 38 d2afba1 not modelled 99.5 10 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 39 c3go6B_ not modelled 99.5 18 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 40 c2c49A_ not modelled 99.5 12 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 41 c3iq0B_ not modelled 99.5 16 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 42 d2absa1 not modelled 99.5 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 43 c2absA_ not modelled 99.5 14 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 44 c3ktnA_ not modelled 99.5 15 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 45 c2pkkA_ not modelled 99.5 14 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 46 c3b1qD_ not modelled 99.5 20 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 47 c2varB_ not modelled 99.4 13 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 48 c3in1A_ not modelled 99.4 18 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 49 d1tyya_ not modelled 99.4 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 50 d2ajra1 not modelled 99.4 11 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 51 c2rbcA_ not modelled 99.4 12 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 52 d1vk4a_ not modelled 99.4 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 53 d2fv7a1 not modelled 99.4 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 54 d2dcna1 not modelled 99.3 9 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 55 c3lhxA_ not modelled 99.3 14 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 56 c3bf5A_ not modelled 99.2 13 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 57 c1tz6B_ not modelled 99.2 22 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 58 c3gbuD_ not modelled 99.2 8 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 59 c3hj6B_ not modelled 99.2 13 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 60 c3kd6B_ not modelled 99.2 21 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 61 c3b3lC_ not modelled 99.2 14 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 62 c3lkiA_ not modelled 99.1 20 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 63 d2nu7b1 not modelled 71.3 14 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 64 d1a9xa4 not modelled 67.2 13 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 65 d1a9xa3 not modelled 40.3 18 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 66 c2hunB_ not modelled 36.5 17 PDB header:lyase Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase; PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3 67 d1a2za_ not modelled 32.3 15 Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 68 c1zxxA_ not modelled 28.0 32 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase; PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii 69 c3i3lA_ not modelled 26.6 34 PDB header:hydrolase Chain: A: PDB Molecule:alkylhalidase cmls; PDBTitle: crystal structure of cmls, a flavin-dependent halogenase 70 d1su0b_ not modelled 25.3 19 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 71 d4pfka_ not modelled 25.0 32 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 72 c3lwbA_ not modelled 24.4 17 PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis 73 d1iu8a_ not modelled 23.8 24 Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 74 c3d3kD_ not modelled 22.4 14 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 75 c2ys6A_ not modelled 20.5 16 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase; PDBTitle: crystal structure of gar synthetase from geobacillus kaustophilus 76 d1eucb1 not modelled 19.7 14 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 77 c2gacD_ not modelled 18.9 12 PDB header:hydrolase Chain: D: PDB Molecule:glycosylasparaginase; PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum 78 c3d3jA_ not modelled 18.6 16 PDB header:protein binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 79 d1pfka_ not modelled 18.6 24 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 80 c2nu9E_ not modelled 17.6 16 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 81 d2gtaa1 not modelled 16.9 7 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 82 d2gtad1 not modelled 15.2 7 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 83 d3adka_ not modelled 14.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 84 d1gc5a_ not modelled 13.5 24 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 85 c3lp8A_ not modelled 12.8 15 PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine-glycine ligase; PDBTitle: crystal structure of phosphoribosylamine-glycine ligase from2 ehrlichia chaffeensis 86 d1xjsa_ not modelled 12.2 15 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 87 c3crcB_ not modelled 12.0 20 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 88 c3kljA_ not modelled 11.9 23 PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum 89 c3e18A_ not modelled 11.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of nad-binding protein from listeria innocua 90 c1qr6A_ not modelled 11.2 10 PDB header:oxidoreductase Chain: A: PDB Molecule:malic enzyme 2; PDBTitle: human mitochondrial nad(p)-dependent malic enzyme 91 c1apzB_ not modelled 11.1 14 PDB header:complex (hydrolase/peptide) Chain: B: PDB Molecule:aspartylglucosaminidase; PDBTitle: human aspartylglucosaminidase complex with reaction product 92 c3atrA_ not modelled 11.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:conserved archaeal protein; PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand 93 d1auga_ not modelled 11.0 16 Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 94 c3tqtB_ not modelled 10.5 13 PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii 95 d1krwa_ not modelled 10.0 22 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 96 c3e5nA_ not modelled 10.0 14 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331 97 c2xdoC_ not modelled 10.0 22 PDB header:oxidoreductase Chain: C: PDB Molecule:tetx2 protein; PDBTitle: structure of the tetracycline degrading monooxygenase tetx2 from2 bacteroides thetaiotaomicron 98 c1txlA_ not modelled 9.8 46 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:metal-binding protein yoda; PDBTitle: crystal structure of metal-binding protein yoda from e.2 coli, pfam duf149 99 d1txla_ not modelled 9.8 46 Fold:Lipocalins Superfamily:Lipocalins Family:Hypothetical protein YodA

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0