08/01/2012 08:10:31 : INFO  : Run start: Sun Jan  8 08:10:29 GMT 2012
08/01/2012 08:10:39 : INFO  : Initialised job
08/01/2012 08:10:41 : INFO  : Renaming log file 'phyre2_20120108_081028.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/1d59ec61e7df1579/phyre_20120108_081028.log'
08/01/2012 08:10:43 : INFO  : Initialised job:
Sequence
>batch____
MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQNTRGVQSVYRIEPDFV
AAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQNVVLDTVMLAKSGDPLLSPS
AVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLEQGRSLLAMGCGAVLMKGGHL
DDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAALAALRPRHTNWADTVQEAKSWL
SSALAQADTLEVGHGIGPVHHFHAWW

08/01/2012 08:10:45 : INFO  : Checked sequence
08/01/2012 08:10:49 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 08:10:51 : INFO  : PSI-BLAST 3 iterations
08/01/2012 08:12:36 : INFO  : PSI-BLAST 5 iterations
08/01/2012 08:15:08 : INFO  : Finished PSI-BLAST
08/01/2012 08:15:11 : INFO  : Running Buildali to generate a3m file
08/01/2012 08:30:17 : INFO  : Converting to HMM
08/01/2012 08:30:22 : INFO  : Calibrating HMM
08/01/2012 08:30:37 : INFO  : Searching HMM database
08/01/2012 08:35:21 : INFO  : Finished buildali
08/01/2012 08:35:24 : INFO  : Predicting secondary structure
08/01/2012 08:35:35 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 08:35:38 : INFO  : Predicting Disordered regions
08/01/2012 08:35:44 : INFO  : Predicted Disorder (Disopred)
08/01/2012 08:35:47 : INFO  : Running memsat_svm check
08/01/2012 08:39:25 : INFO  : Running memsat_svm full
08/01/2012 08:44:09 : INFO  : Predicted Transmembrane (memsat_svm) ID '1d59ec61e7df1579'
08/01/2012 08:44:13 : INFO  : Initialising fold library search
08/01/2012 08:44:19 : INFO  : Initialised search input
08/01/2012 08:44:23 : INFO  : Building Ensemble models
08/01/2012 08:44:29 : INFO  : Building hh.d1jxha_.model.1.pdb
08/01/2012 08:44:54 : INFO  : Building d1jxha_.1.pdb
08/01/2012 08:45:19 : INFO  : Building c3rm5B_.2.pdb
08/01/2012 08:45:45 : INFO  : Building c2i5bC_.3.pdb
08/01/2012 08:46:09 : INFO  : Building d1ub0a_.4.pdb
08/01/2012 08:46:34 : INFO  : Building c3mbjA_.5.pdb
08/01/2012 08:46:59 : INFO  : Building c3ibqA_.6.pdb
08/01/2012 08:47:24 : INFO  : Building d1vi9a_.7.pdb
08/01/2012 08:47:48 : INFO  : Building d1lhpa_.8.pdb
08/01/2012 08:48:13 : INFO  : Building c2ddmA_.9.pdb
08/01/2012 08:48:36 : INFO  : Building d1kyha_.10.pdb
08/01/2012 08:49:01 : INFO  : Building c2r3bA_.11.pdb
08/01/2012 08:49:25 : INFO  : Building d2ax3a1.12.pdb
08/01/2012 08:49:50 : INFO  : Building c2ax3A_.13.pdb
08/01/2012 08:50:14 : INFO  : Building c3bgkA_.14.pdb
08/01/2012 08:50:39 : INFO  : Building c3k5wA_.15.pdb
08/01/2012 08:51:02 : INFO  : Building c3dzvB_.16.pdb
08/01/2012 08:51:25 : INFO  : Building d1v8aa_.17.pdb
08/01/2012 08:51:50 : INFO  : Building d1ekqa_.18.pdb
08/01/2012 08:52:15 : INFO  : Building c2jg1C_.19.pdb
08/01/2012 08:52:40 : INFO  : Building d2abqa1.20.pdb
08/01/2012 08:53:31 : INFO  : Finished HH model building
08/01/2012 08:53:34 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 08:54:43 : INFO  : html domain output complete ID '1d59ec61e7df1579'
08/01/2012 10:08:36 : INFO  : Run end  : Sun Jan  8 10:08:34 GMT 2012
