Email l.a.kelley@imperial.ac.uk Description P0A7D4 Date Wed Jan 25 15:20:17 GMT 2012 Unique Job ID 1ca10b64ca10bd75

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1qf5a_ 100.0 100 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 2 d1dj2a_ 100.0 44 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 3 d1dj3a_ 100.0 44 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 4 d1iwea_ 100.0 43 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 5 c1iweB_ 100.0 43 PDB header:ligase Chain: B: PDB Molecule:adenylosuccinate synthetase; PDBTitle: imp complex of the recombinant mouse-muscle2 adenylosuccinate synthetase 6 d1p9ba_ 100.0 40 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 7 c3ue9A_ 100.0 61 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of adenylosuccinate synthetase (ampsase) (pura) from2 burkholderia thailandensis 8 c3r7tA_ 100.0 47 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of adenylosuccinate synthetase from campylobacter2 jejuni 9 c2d7uA_ 100.0 43 PDB header:ligase Chain: A: PDB Molecule:adenylosuccinate synthetase; PDBTitle: crystal structure of hypothetical adenylosuccinate synthetase, ph04382 from pyrococcus horikoshii ot3 10 d1a0ia1 88.4 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 11 d1p9pa_ 57.7 19 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 12 c3fwzA_ 54.0 27 PDB header:membrane protein Chain: A: PDB Molecule:inner membrane protein ybal; PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli 13 d1uala_ 54.0 19 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 14 d2jfga1 53.2 21 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 15 c3knuD_ 52.3 21 PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum 16 c1zgxA_ 49.6 25 PDB header:hydrolase Chain: A: PDB Molecule:guanyl-specific ribonuclease sa; PDBTitle: crystal structure of ribonuclease mutant 17 d2f09a1 44.9 10 Fold:Streptavidin-like Superfamily:YdhA-like Family:YdhA-like 18 c3ky7A_ 43.7 23 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 19 d1qwda_ 39.7 15 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 20 d1gm5a2 35.5 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:RecG "wedge" domain 21 c3iefA_ not modelled 34.3 25 PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. 22 c2ixaA_ not modelled 34.2 18 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 23 c2qioA_ not modelled 32.3 8 PDB header:unknown function Chain: A: PDB Molecule:enoyl-(acyl-carrier-protein) reductase; PDBTitle: x-ray structure of enoyl-acyl carrier protein reductase from bacillus2 anthracis with triclosan 24 d1jsca3 not modelled 30.9 14 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 25 c1k1qA_ not modelled 28.4 16 PDB header:transcription Chain: A: PDB Molecule:dbh protein; PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus 26 c3dnfB_ not modelled 26.3 22 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 27 c3quvB_ not modelled 26.0 16 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus 28 d1lt7a_ not modelled 24.8 21 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 29 c2xf4A_ not modelled 24.6 19 PDB header:hydrolase Chain: A: PDB Molecule:hydroxyacylglutathione hydrolase; PDBTitle: crystal structure of salmonella enterica serovar2 typhimurium ycbl 30 c3opyE_ not modelled 24.3 12 PDB header:transferase Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 31 d1k1ga_ not modelled 23.4 29 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 32 d1g7oa1 not modelled 22.3 14 Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain 33 d1e6ca_ not modelled 22.3 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK) 34 c2nm0B_ not modelled 21.6 19 PDB header:oxidoreductase Chain: B: PDB Molecule:probable 3-oxacyl-(acyl-carrier-protein) reductase; PDBTitle: crystal structure of sco1815: a beta-ketoacyl-acyl carrier protein2 reductase from streptomyces coelicolor a3(2) 35 c1kyqC_ not modelled 21.5 17 PDB header:oxidoreductase, lyase Chain: C: PDB Molecule:siroheme biosynthesis protein met8; PDBTitle: met8p: a bifunctional nad-dependent dehydrogenase and2 ferrochelatase involved in siroheme synthesis. 36 d1hywa_ not modelled 20.0 41 Fold:gpW/XkdW-like Superfamily:Head-to-tail joining protein W, gpW Family:Head-to-tail joining protein W, gpW 37 c2inrA_ not modelled 19.6 18 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus 38 d1lnia_ not modelled 18.8 25 Fold:Microbial ribonucleases Superfamily:Microbial ribonucleases Family:Bacterial ribonucleases 39 c3p19A_ not modelled 18.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:putative blue fluorescent protein; PDBTitle: improved nadph-dependent blue fluorescent protein 40 c2z2vA_ not modelled 18.6 30 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1688; PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii 41 c2cfcB_ not modelled 18.3 16 PDB header:oxidoreductase Chain: B: PDB Molecule:2-(r)-hydroxypropyl-com dehydrogenase; PDBTitle: structural basis for stereo selectivity in the (r)- and2 (s)-hydroxypropylethane thiosulfonate dehydrogenases 42 c3db2C_ not modelled 18.0 15 PDB header:oxidoreductase Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase; PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution 43 c2gr2A_ not modelled 18.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin reductase; PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form) 44 c2wfbA_ not modelled 17.7 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative uncharacterized protein orp; PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas 45 d1d7ya1 not modelled 17.7 42 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 46 d1oy5a_ not modelled 17.6 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 47 c1oy5B_ not modelled 17.6 14 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus 48 c1yfsB_ not modelled 17.5 13 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine 49 d2i1qa1 not modelled 17.4 15 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 50 c3ktsA_ not modelled 17.4 14 PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 51 d1k1sa2 not modelled 17.0 16 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 52 d1qyia_ not modelled 16.9 22 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein MW1667 (SA1546) 53 d1qnaa1 not modelled 16.7 12 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 54 d1nh2a1 not modelled 16.5 11 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 55 d1jx4a2 not modelled 16.3 18 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 56 c2zzfA_ not modelled 16.0 15 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of alanyl-trna synthetase without2 oligomerization domain 57 c3f6zB_ not modelled 15.9 25 PDB header:hydrolase Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of pseudomonas aeruginosa mlic in complex2 with hen egg white lysozyme 58 d1q44a_ not modelled 15.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 59 c1ujlA_ not modelled 15.6 33 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker 60 c3dtyA_ not modelled 15.3 18 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae 61 d1fi4a2 not modelled 15.1 56 Fold:Ferredoxin-like Superfamily:GHMP Kinase, C-terminal domain Family:Mevalonate 5-diphosphate decarboxylase 62 d1y6ia1 not modelled 15.0 78 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:GUN4-associated domain 63 d1cora_ not modelled 14.8 18 Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c 64 d2bl5a1 not modelled 14.7 29 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 65 d1cdwa1 not modelled 14.6 12 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 66 d1uuqa_ not modelled 14.0 28 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 67 c1uz4A_ not modelled 14.0 28 PDB header:hydrolase Chain: A: PDB Molecule:man5a; PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis 68 d1pzna1 not modelled 13.9 21 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 69 c2hivA_ not modelled 13.6 42 PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from s. solfataricus 70 d2bcqa2 not modelled 13.6 25 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 71 c2v7sA_ not modelled 13.5 28 PDB header:unknown function Chain: A: PDB Molecule:probable conserved lipoprotein lppa; PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis 72 c1t3nB_ not modelled 13.4 22 PDB header:replication/dna Chain: B: PDB Molecule:polymerase (dna directed) iota; PDBTitle: structure of the catalytic core of dna polymerase iota in2 complex with dna and dttp 73 d1t6ca1 not modelled 13.4 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 74 d1id1a_ not modelled 13.2 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Potassium channel NAD-binding domain 75 d1jmsa3 not modelled 13.1 38 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 76 d1znwa1 not modelled 12.8 32 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 77 c3c5yD_ not modelled 12.6 18 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 78 d1qsga_ not modelled 12.6 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 79 c2y0nD_ not modelled 12.6 13 PDB header:transcription Chain: D: PDB Molecule:male-specific lethal 3 homolog; PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3 80 d1riqa1 not modelled 12.4 13 Fold:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Superfamily:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Family:Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 81 c3hi0B_ not modelled 12.3 23 PDB header:hydrolase Chain: B: PDB Molecule:putative exopolyphosphatase; PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution 82 d1zeta2 not modelled 12.1 22 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 83 d1t94a2 not modelled 12.0 14 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 84 d1x9na2 not modelled 11.9 32 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 85 d2a3ra1 not modelled 11.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 86 c1u9iA_ not modelled 11.6 12 PDB header:circadian clock protein Chain: A: PDB Molecule:kaic; PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites 87 c1s97D_ not modelled 11.5 14 PDB header:transferase/dna Chain: D: PDB Molecule:dna polymerase iv; PDBTitle: dpo4 with gt mismatch 88 c2ovfA_ not modelled 11.4 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:stal; PDBTitle: crystal structure of stal-pap complex 89 d1a0rp_ not modelled 11.4 33 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Phosducin 90 c3o38D_ not modelled 11.2 18 PDB header:oxidoreductase Chain: D: PDB Molecule:short chain dehydrogenase; PDBTitle: crystal structure of a short chain dehydrogenase from mycobacterium2 smegmatis 91 c1ylmA_ not modelled 11.1 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein bsu32300; PDBTitle: structure of cytosolic protein of unknown function yute2 from bacillus subtilis 92 d2fmpa2 not modelled 11.0 38 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 93 d1fuea_ not modelled 10.9 13 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 94 d2vana1 not modelled 10.9 38 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:DNA polymerase beta-like, second domain 95 d2ppqa1 not modelled 10.8 14 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:APH phosphotransferases 96 c3he8A_ not modelled 10.5 16 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 97 c1fi4A_ not modelled 10.5 56 PDB header:lyase Chain: A: PDB Molecule:mevalonate 5-diphosphate decarboxylase; PDBTitle: the x-ray crystal structure of mevalonate 5-diphosphate decarboxylase2 at 2.3 angstrom resolution. 98 c3nbxX_ not modelled 10.5 21 PDB header:hydrolase Chain: X: PDB Molecule:atpase rava; PDBTitle: crystal structure of e. coli rava (regulatory atpase variant a) in2 complex with adp 99 c2fllA_ not modelled 10.5 22 PDB header:replication/dna Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: ternary complex of human dna polymerase iota with dna and dttp