Email l.a.kelley@imperial.ac.uk Description P37342 Date Thu Jan 5 11:55:22 GMT 2012 Unique Job ID 15cc669e4b061816

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1r9da_ 100.0 17 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 2 c2y8nC_ 100.0 16 PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme 3 c2f3oB_ 100.0 17 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 4 d1h16a_ 100.0 18 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 5 c1hk8A_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 6 d1hk8a_ 100.0 18 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 7 d1qhma_ 100.0 16 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 8 c2wghA_ 97.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg. 9 c2cvuA_ 97.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i 10 c3hnfA_ 97.2 20 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp 11 c1xjeA_ 96.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex 12 c3r1rB_ 96.0 14 PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli 13 c1pemA_ 95.5 14 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium 14 d1peqa2 95.3 14 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 15 d1rlra2 94.0 10 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 16 d1l1la_ 72.6 14 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:B12-dependent (class II) ribonucleotide reductase 17 c3a9rA_ 41.5 17 PDB header:isomerase Chain: A: PDB Molecule:d-arabinose isomerase; PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol 18 c2vg2C_ 39.1 13 PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp 19 d1ueha_ 39.0 16 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 20 c3ugsB_ 36.6 8 PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni 21 d1vioa2 not modelled 26.2 21 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 22 c1jp3A_ not modelled 25.3 16 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase 23 d1j6wa_ not modelled 24.6 11 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 24 c3vjjA_ not modelled 23.0 24 PDB header:viral protein Chain: A: PDB Molecule:p9-1; PDBTitle: crystal structure analysis of the p9-1 25 c3gxxB_ not modelled 22.5 13 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b 26 c2pd0D_ not modelled 22.3 13 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: protein cgd2_2020 from cryptosporidium parvum 27 d2cb5a_ not modelled 22.1 14 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Papain-like 28 c3gr1A_ not modelled 21.6 12 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 29 d1j6xa_ not modelled 21.6 11 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 30 c3mf2B_ not modelled 20.2 8 PDB header:ligase Chain: B: PDB Molecule:bll0957 protein; PDBTitle: crystal structure of class ii aars homologue (bll0957) complexed with2 amp 31 d1dm9a_ not modelled 18.5 17 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 32 c1dm9A_ not modelled 18.5 17 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 33 d1f75a_ not modelled 16.6 6 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 34 d1vh4a_ not modelled 16.5 14 Fold:Single-stranded right-handed beta-helix Superfamily:Stabilizer of iron transporter SufD Family:Stabilizer of iron transporter SufD 35 c3mx2A_ not modelled 16.2 21 PDB header:nuclear protein Chain: A: PDB Molecule:nucleoprotein; PDBTitle: lassa fever virus nucleoprotein complexed with dttp 36 d1ouoa_ not modelled 15.8 10 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:Endonuclease I 37 c2vfwB_ not modelled 14.2 10 PDB header:transferase Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase; PDBTitle: rv1086 native 38 d1pugb_ not modelled 14.1 16 Fold:YbaB-like Superfamily:YbaB-like Family:YbaB-like 39 d2c1wa1 not modelled 14.0 19 Fold:EndoU-like Superfamily:EndoU-like Family:Eukaryotic EndoU ribonuclease 40 c3f42A_ not modelled 13.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hp0035; PDBTitle: crystal structure of uncharacterized protein hp0035 from helicobacter2 pylori 41 c3gr0D_ not modelled 13.4 12 PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362) 42 d1frba_ not modelled 12.9 24 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 43 d1dq3a4 not modelled 12.5 14 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 44 c2h5gA_ not modelled 11.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:delta 1-pyrroline-5-carboxylate synthetase; PDBTitle: crystal structure of human pyrroline-5-carboxylate synthetase 45 d1j08a2 not modelled 11.2 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 46 c3ofgA_ not modelled 10.5 7 PDB header:chaperone Chain: A: PDB Molecule:boca/mesd chaperone for ywtd beta-propeller-egf protein 1; PDBTitle: structured domain of caenorhabditis elegans bmy-1 47 d1l8na1 not modelled 10.5 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain 48 d2rh3a1 not modelled 10.1 50 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:VirC2-like 49 d1h21a_ not modelled 10.0 17 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Di-heme elbow motif 50 c1mqrA_ not modelled 9.7 11 PDB header:hydrolase Chain: A: PDB Molecule:alpha-d-glucuronidase; PDBTitle: the crystal structure of alpha-d-glucuronidase (e386q) from bacillus2 stearothermophilus t-6 51 c3erpA_ not modelled 9.5 14 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium 52 c2i9sA_ not modelled 9.5 13 PDB header:chaperone Chain: A: PDB Molecule:mesoderm development candidate 2; PDBTitle: the solution structure of the core of mesoderm development2 (mesd). 53 c3ofeB_ not modelled 9.3 6 PDB header:chaperone Chain: B: PDB Molecule:ldlr chaperone boca; PDBTitle: structured domain of drosophila melanogaster boca p41 2 2 crystal form 54 c3ry0A_ not modelled 9.3 8 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 55 c1gqkB_ not modelled 9.1 11 PDB header:hydrolase Chain: B: PDB Molecule:alpha-d-glucuronidase; PDBTitle: structure of pseudomonas cellulosa alpha-d-glucuronidase2 complexed with glucuronic acid 56 d1z41a1 not modelled 8.8 16 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 57 d1lv3a_ not modelled 8.5 16 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 58 c1zxjB_ not modelled 8.4 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein mg377 homolog; PDBTitle: crystal structure of the hypthetical mycoplasma protein,2 mpn555 59 c1ybxA_ not modelled 8.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum 60 d1mi3a_ not modelled 8.3 20 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 61 c2cqjA_ not modelled 8.3 7 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 62 c2f7cA_ not modelled 8.2 13 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate 63 d1mp9a1 not modelled 8.2 7 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 64 d1jvaa3 not modelled 8.0 8 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 65 c1sjiA_ not modelled 7.9 18 PDB header:metal binding protein Chain: A: PDB Molecule:calsequestrin, cardiac muscle isoform; PDBTitle: comparing skeletal and cardiac calsequestrin structures and2 their calcium binding: a proposed mechanism for coupled3 calcium binding and protein polymerization 66 c2h9qC_ not modelled 7.9 13 PDB header:transcription Chain: C: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h) 67 d1hw6a_ not modelled 7.8 17 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 68 d1q2za_ not modelled 7.7 12 Fold:alpha-alpha superhelix Superfamily:C-terminal domain of Ku80 Family:C-terminal domain of Ku80 69 d1c9wa_ not modelled 7.7 19 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 70 c3r6fA_ not modelled 7.4 10 PDB header:hydrolase Chain: A: PDB Molecule:hit family protein; PDBTitle: crystal structure of a zinc-containing hit family protein from2 encephalitozoon cuniculi 71 c3t4aG_ not modelled 7.3 23 PDB header:immune system Chain: G: PDB Molecule:fibrinogen-binding protein; PDBTitle: structure of a truncated form of staphylococcal complement inhibitor b2 bound to human c3c at 3.4 angstrom resolution 72 d1bjpa_ not modelled 7.3 14 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 73 c2xzeA_ not modelled 7.2 17 PDB header:hydrolase/protein transport Chain: A: PDB Molecule:stam-binding protein; PDBTitle: structural basis for amsh-escrt-iii chmp3 interaction 74 d1w2za2 not modelled 7.2 21 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 75 c3ol0C_ not modelled 7.2 8 PDB header:de novo protein Chain: C: PDB Molecule:de novo designed monomer trefoil-fold sub-domain which PDBTitle: crystal structure of monofoil-4p homo-trimer: de novo designed monomer2 trefoil-fold sub-domain which forms homo-trimer assembly 76 d1nj1a3 not modelled 6.9 4 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 77 d2fm8a1 not modelled 6.9 2 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 78 c3mixA_ not modelled 6.8 12 PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: crystal structure of the cytosolic domain of b. subtilis flha 79 c3n4pA_ not modelled 6.7 18 PDB header:dna binding protein Chain: A: PDB Molecule:terminase subunit ul89 protein; PDBTitle: human cytomegalovirus terminase nuclease domain 80 c3abfB_ not modelled 6.7 10 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 81 d1u7za_ not modelled 6.6 7 Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like 82 d2g2xa1 not modelled 6.5 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 83 c2d2rA_ not modelled 6.4 13 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase 84 c2qffA_ not modelled 6.3 23 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of staphylococcal complement inhibitor 85 d2z1ca1 not modelled 6.2 7 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 86 c3dh3C_ not modelled 6.0 21 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 87 c3inpA_ not modelled 6.0 14 PDB header:isomerase Chain: A: PDB Molecule:d-ribulose-phosphate 3-epimerase; PDBTitle: 2.05 angstrom resolution crystal structure of d-ribulose-phosphate 3-2 epimerase from francisella tularensis. 88 c2op8A_ not modelled 5.9 16 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 89 d1dzfa2 not modelled 5.8 26 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 90 c2kkvA_ not modelled 5.8 19 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of an integrase domain from protein2 spa4288 from salmonella enterica, northeast structural3 genomics consortium target slr105h 91 c3u1nC_ not modelled 5.8 19 PDB header:hydrolase Chain: C: PDB Molecule:sam domain and hd domain-containing protein 1; PDBTitle: structure of the catalytic core of human samhd1 92 d1qnaa1 not modelled 5.8 18 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 93 d1qnaa2 not modelled 5.7 11 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 94 d1aisa1 not modelled 5.7 4 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 95 c2h9bB_ not modelled 5.7 17 PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s) 96 d1x3ca1 not modelled 5.6 19 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 97 c3o0kB_ not modelled 5.5 20 PDB header:oxidoreductase Chain: B: PDB Molecule:aldo/keto reductase; PDBTitle: crystal structure of aldo/keto reductase from brucella melitensis 98 c3cwzB_ not modelled 5.5 11 PDB header:transport protein Chain: B: PDB Molecule:rab6-interacting protein 1; PDBTitle: strucure of rab6(gtp)-r6ip1 complex 99 d1f54a_ not modelled 5.5 4 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like