Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	R	L	T	L	A	L	D	V	M	G	G	D	F	G	P	S	V	T	V	P	A	A	L	Q	A	L	N	S	N	S	Q	L	T	L	L	L	V	G	N	S	D	A	I	T	P	L	L	A	K	A	D	F	E	Q	R	S	R	L
Secondary structure
SS confidence
Disorder		?	?	?	?																																																?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	I	I	P	A	Q	S	V	I	A	S	D	A	R	P	S	Q	A	I	R	A	S	R	G	S	S	M	R	V	A	L	E	L	V	K	E	G	R	A	Q	A	C	V	S	A	G	N	T	G	A	L	M	G	L	A	K	L	L	L	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	L	E	G	I	E	R	P	A	L	V	T	V	L	P	H	Q	Q	K	G	K	T	V	V	L	D	L	G	A	N	V	D	C	D	S	T	M	L	V	Q	F	A	I	M	G	S	V	L	A	E	E	V	V	E	I	P	N	P	R	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	L	L	N	I	G	E	E	E	V	K	G	L	D	S	I	R	D	A	S	A	V	L	K	T	I	P	S	I	N	Y	I	G	Y	L	E	A	N	E	L	L	T	G	K	T	D	V	L	V	C	D	G	F	T	G	N	V	T	L	K
Secondary structure
SS confidence
Disorder											?	?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	M	E	G	V	V	R	M	F	L	S	L	L	K	S	Q	G	E	G	K	K	R	S	W	W	L	L	L	L	K	R	W	L	Q	K	S	L	T	R	R	F	S	H	L	N	P	D	Q	Y	N	G	A	C	L	L	G	L	R	G	T
Secondary structure
SS confidence
Disorder																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Sequence		V	I	K	S	H	G	A	A	N	Q	R	A	F	A	V	A	I	E	Q	A	V	Q	A	V	Q	R	Q	V	P	Q	R	I	A	A	R	L	E	S	V	Y	P	A	G	F	E	L	L	D	G	G	K	S	G	T	L	R
Secondary structure
SS confidence
Disorder																																									?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1u7n chain A Region: 5 - 337 Aligned: 315 Modelled: 333 Confidence: 100.0% Identity: 37% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: PlsX-like Phyre2 PDB 1vi1 chain A Region: 4 - 342 Aligned: 325 Modelled: 339 Confidence: 100.0% Identity: 36% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: PlsX-like Phyre2 PDB 1xco chain A Region: 2 - 321 Aligned: 272 Modelled: 281 Confidence: 100.0% Identity: 22% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Phosphotransacetylase Phyre2 PDB 2af4 chain C domain 1 Region: 3 - 326 Aligned: 278 Modelled: 285 Confidence: 100.0% Identity: 19% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Phosphotransacetylase Phyre2 PDB 1r5j chain A Region: 2 - 327 Aligned: 279 Modelled: 281 Confidence: 100.0% Identity: 22% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Phosphotransacetylase Phyre2 PDB 1yco chain A Region: 3 - 327 Aligned: 256 Modelled: 261 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:branched-chain phosphotransacylase; PDBTitle: crystal structure of a branched-chain phosphotransacylase from2 enterococcus faecalis v583 Phyre2 PDB 3tng chain A Region: 2 - 326 Aligned: 257 Modelled: 271 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:lmo1369 protein; PDBTitle: the crystal structure of a possible phosphate acetyl/butaryl2 transferase from listeria monocytogenes egd-e. Phyre2 PDB 1vmi chain A Region: 2 - 321 Aligned: 274 Modelled: 280 Confidence: 100.0% Identity: 19% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: Phosphotransacetylase Phyre2 PDB 1vmi chain A Region: 2 - 321 Aligned: 274 Modelled: 280 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:putative phosphate acetyltransferase; PDBTitle: crystal structure of putative phosphate acetyltransferase2 (np_416953.1) from escherichia coli k12 at 2.32 a resolution Phyre2 PDB 1ptm chain A Region: 1 - 326 Aligned: 282 Modelled: 306 Confidence: 100.0% Identity: 16% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: PdxA-like Phyre2 PDB 1yxo chain B Region: 4 - 327 Aligned: 280 Modelled: 292 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 1; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic protein pdxa2 pa0593 Phyre2 PDB 1r8k chain A Region: 5 - 327 Aligned: 266 Modelled: 281 Confidence: 100.0% Identity: 17% Fold: Isocitrate/Isopropylmalate dehydrogenase-like Superfamily: Isocitrate/Isopropylmalate dehydrogenase-like Family: PdxA-like Phyre2 PDB 2hi1 chain A Region: 5 - 230 Aligned: 217 Modelled: 217 Confidence: 98.4% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 2; PDBTitle: the structure of a putative 4-hydroxythreonine-4-phosphate2 dehydrogenase from salmonella typhimurium. Phyre2 PDB 1qgo chain A Region: 298 - 330 Aligned: 33 Modelled: 33 Confidence: 74.7% Identity: 12% Fold: Chelatase-like Superfamily: Chelatase Family: Cobalt chelatase CbiK Phyre2 PDB 1gml chain A Region: 175 - 243 Aligned: 59 Modelled: 69 Confidence: 64.9% Identity: 19% Fold: The "swivelling" beta/beta/alpha domain Superfamily: GroEL apical domain-like Family: Group II chaperonin (CCT, TRIC), apical domain Phyre2 PDB 2phj chain A Region: 14 - 185 Aligned: 146 Modelled: 148 Confidence: 56.6% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:5'-nucleotidase sure; PDBTitle: crystal structure of sure protein from aquifex aeolicus Phyre2 PDB 3qd5 chain B Region: 1 - 123 Aligned: 86 Modelled: 111 Confidence: 56.0% Identity: 23% PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr Phyre2 PDB 3lyh chain B Region: 298 - 326 Aligned: 29 Modelled: 29 Confidence: 55.8% Identity: 17% PDB header:lyase Chain: B: PDB Molecule:cobalamin (vitamin b12) biosynthesis cbix protein; PDBTitle: crystal structure of putative cobalamin (vitamin b12) biosynthesis2 cbix protein (yp_958415.1) from marinobacter aquaeolei vt8 at 1.60 a3 resolution Phyre2 PDB 3gdw chain A Region: 299 - 319 Aligned: 21 Modelled: 21 Confidence: 53.7% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma-54 interaction domain protein; PDBTitle: crystal structure of sigma-54 interaction domain protein from2 enterococcus faecalis Phyre2 PDB 1tjn chain A Region: 298 - 327 Aligned: 30 Modelled: 30 Confidence: 52.2% Identity: 23% Fold: Chelatase-like Superfamily: Chelatase Family: CbiX-like Phyre2 1 d1u7na_ 2 d1vi1a_ 3 d1xcoa_ 4 d2af4c1 5 d1r5ja_ 6 c1ycoA_ 7 c3tngA_ 8 d1vmia_ 9 c1vmiA_ 10 d1ptma_ 11 c1yxoB_ 12 d1r8ka_ 13 c2hi1A_ 14 d1qgoa_ 15 d1gmla_ 16 c2phjA_ 17 c3qd5B_ 18 c3lyhB_ 19 c3gdwA_ 20 d1tjna_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1u7na_ 100.0 37 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PlsX-like 2 d1vi1a_ 100.0 36 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PlsX-like 3 d1xcoa_ 100.0 22 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 4 d2af4c1 100.0 19 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 5 d1r5ja_ 100.0 22 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 6 c1ycoA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:branched-chain phosphotransacylase; PDBTitle: crystal structure of a branched-chain phosphotransacylase from2 enterococcus faecalis v583 7 c3tngA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:lmo1369 protein; PDBTitle: the crystal structure of a possible phosphate acetyl/butaryl2 transferase from listeria monocytogenes egd-e. 8 d1vmia_ 100.0 19 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 9 c1vmiA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:putative phosphate acetyltransferase; PDBTitle: crystal structure of putative phosphate acetyltransferase2 (np_416953.1) from escherichia coli k12 at 2.32 a resolution 10 d1ptma_ 100.0 16 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PdxA-like 11 c1yxoB_ 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 1; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic protein pdxa2 pa0593 12 d1r8ka_ 100.0 17 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:PdxA-like 13 c2hi1A_ 98.4 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:4-hydroxythreonine-4-phosphate dehydrogenase 2; PDBTitle: the structure of a putative 4-hydroxythreonine-4-phosphate2 dehydrogenase from salmonella typhimurium. 14 d1qgoa_ 74.7 12 Fold:Chelatase-like Superfamily:Chelatase Family:Cobalt chelatase CbiK 15 d1gmla_ 64.9 19 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 16 c2phjA_ 56.6 18 PDB header:hydrolase Chain: A: PDB Molecule:5'-nucleotidase sure; PDBTitle: crystal structure of sure protein from aquifex aeolicus 17 c3qd5B_ 56.0 23 PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr 18 c3lyhB_ 55.8 17 PDB header:lyase Chain: B: PDB Molecule:cobalamin (vitamin b12) biosynthesis cbix protein; PDBTitle: crystal structure of putative cobalamin (vitamin b12) biosynthesis2 cbix protein (yp_958415.1) from marinobacter aquaeolei vt8 at 1.60 a3 resolution 19 c3gdwA_ 53.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma-54 interaction domain protein; PDBTitle: crystal structure of sigma-54 interaction domain protein from2 enterococcus faecalis 20 d1tjna_ 52.2 23 Fold:Chelatase-like Superfamily:Chelatase Family:CbiX-like 21 c1tjnA_ not modelled 52.2 23 PDB header:lyase Chain: A: PDB Molecule:sirohydrochlorin cobaltochelatase; PDBTitle: crystal structure of hypothetical protein af0721 from archaeoglobus2 fulgidus 22 c2pjuD_ not modelled 52.0 21 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 23 d1kzyc2 not modelled 48.1 29 Fold:BRCT domain Superfamily:BRCT domain Family:53BP1 24 c2ja9A_ not modelled 46.9 14 PDB header:rna-binding protein Chain: A: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the n-terminal deletion of yeast exosome2 component rrp40 25 d1q3qa3 not modelled 43.6 19 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:Group II chaperonin (CCT, TRIC), intermediate domain 26 d1j9ja_ not modelled 43.5 16 Fold:SurE-like Superfamily:SurE-like Family:SurE-like 27 d1wu2a3 not modelled 42.9 33 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 28 c2v4oB_ not modelled 42.2 18 PDB header:hydrolase Chain: B: PDB Molecule:multifunctional protein sur e; PDBTitle: crystal structure of salmonella typhimurium sure at 2.752 angstrom resolution in monoclinic form 29 c2xvzA_ not modelled 40.6 19 PDB header:metal binding protein Chain: A: PDB Molecule:chelatase, putative; PDBTitle: cobalt chelatase cbik (periplasmatic) from desulvobrio2 vulgaris hildenborough (co-crystallized with cobalt) 30 d1y5ea1 not modelled 39.5 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 31 d2pjua1 not modelled 38.5 22 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 32 d1fuia2 not modelled 38.3 14 Fold:FucI/AraA N-terminal and middle domains Superfamily:FucI/AraA N-terminal and middle domains Family:L-fucose isomerase, N-terminal and second domains 33 d2ja9a2 not modelled 38.2 15 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 34 d2ftsa3 not modelled 36.8 45 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 35 c3gx1A_ not modelled 35.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin1832 protein; PDBTitle: crystal structure of a domain of lin1832 from listeria innocua 36 d3ct6a1 not modelled 35.2 29 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:DhaM-like 37 d1uz5a3 not modelled 34.8 45 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 38 c3k93A_ not modelled 31.0 26 PDB header:hydrolase Chain: A: PDB Molecule:phage related exonuclease; PDBTitle: crystal structure of phage related exonuclease (yp_719632.1) from2 haemophilus somnus 129pt at 2.15 a resolution 39 d3b48a1 not modelled 30.1 24 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:DhaM-like 40 c3imkA_ not modelled 29.7 22 PDB header:metal binding protein Chain: A: PDB Molecule:putative molybdenum carrier protein; PDBTitle: crystal structure of putative molybdenum carrier protein (yp_461806.1)2 from syntrophus aciditrophicus sb at 1.45 a resolution 41 d1pkpa1 not modelled 28.9 19 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 42 d2uube1 not modelled 28.3 24 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 43 d1iowa1 not modelled 28.0 21 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 44 c3se7A_ not modelled 26.7 11 PDB header:ligase Chain: A: PDB Molecule:vana; PDBTitle: ancient vana 45 c3lkzB_ not modelled 24.6 23 PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase 46 d1jlja_ not modelled 22.9 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 47 d1su1a_ not modelled 21.8 14 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 48 c1su1A_ not modelled 21.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yfce; PDBTitle: structural and biochemical characterization of yfce, a2 phosphoesterase from e. coli 49 c1p6gE_ not modelled 21.6 15 PDB header:ribosome Chain: E: PDB Molecule:30s ribosomal protein s5; PDBTitle: real space refined coordinates of the 30s subunit fitted2 into the low resolution cryo-em map of the ef-g.gtp state3 of e. coli 70s ribosome 50 c1jqsB_ not modelled 21.3 50 PDB header:ribosome Chain: B: PDB Molecule:elongation factor g; PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog 51 d2qale1 not modelled 21.2 19 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 52 c3i12A_ not modelled 20.4 17 PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: the crystal structure of the d-alanyl-alanine synthetase a from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 53 d1v4va_ not modelled 19.9 21 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 54 d1a6db2 not modelled 19.8 14 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 55 d1assa_ not modelled 17.5 17 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 56 d1iqoa_ not modelled 17.2 14 Fold:Hypothetical protein MTH1880 Superfamily:Hypothetical protein MTH1880 Family:Hypothetical protein MTH1880 57 c2xcuC_ not modelled 17.2 16 PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp 58 c2xnkA_ not modelled 16.3 20 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1; PDBTitle: structure and function of the rad9-binding region of the dna damage2 checkpoint adaptor topbp1 59 c2e6gI_ not modelled 16.1 19 PDB header:hydrolase Chain: I: PDB Molecule:5'-nucleotidase sure; PDBTitle: crystal structure of the stationary phase survival protein sure from2 thermus thermophilus hb8 in complex with phosphate 60 c3qfnA_ not modelled 16.0 19 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of streptococcal asymmetric ap4a hydrolase and2 phosphodiesterase spr1479/saph in complex with inorganic phosphate 61 c3af5A_ not modelled 15.7 26 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii 62 d1tqya1 not modelled 14.5 14 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 63 c2nqqA_ not modelled 14.0 50 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 64 c3dcjA_ not modelled 13.6 22 PDB header:transferase Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative 65 c2xzmE_ not modelled 13.4 20 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 66 c3lfhF_ not modelled 13.0 19 PDB header:transferase Chain: F: PDB Molecule:phosphotransferase system, mannose/fructose-specific PDBTitle: crystal structure of manxa from thermoanaerobacter tengcongensis 67 c2fu3A_ not modelled 13.0 27 PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain 68 c2q5cA_ not modelled 12.9 18 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 69 d1b77a2 not modelled 12.5 19 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 70 c3iprC_ not modelled 12.5 35 PDB header:transferase Chain: C: PDB Molecule:pts system, iia component; PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component 71 c3oryA_ not modelled 12.4 18 PDB header:hydrolase Chain: A: PDB Molecule:flap endonuclease 1; PDBTitle: crystal structure of flap endonuclease 1 from hyperthermophilic2 archaeon desulfurococcus amylolyticus 72 c2ow8f_ not modelled 12.4 28 PDB header:ribosome Chain: F: PDB Molecule: PDBTitle: crystal structure of a 70s ribosome-trna complex reveals functional2 interactions and rearrangements. this file, 2ow8, contains the 30s3 ribosome subunit, two trna, and mrna molecules. 50s ribosome subunit4 is in the file 1vsa. 73 d1lqta1 not modelled 12.1 9 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like 74 d2nn6g3 not modelled 11.5 13 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 75 d1kfia2 not modelled 11.3 25 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 76 c3bbnE_ not modelled 10.6 31 PDB header:ribosome Chain: E: PDB Molecule:ribosomal protein s5; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 77 d1oaoa_ not modelled 10.5 27 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 78 c2yw3E_ not modelled 10.5 20 PDB header:lyase Chain: E: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- PDBTitle: crystal structure analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-2 deydro-3-deoxyphosphogluconate aldolase from tthb1 79 d1o6ca_ not modelled 10.4 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 80 c2jfsA_ not modelled 10.4 12 PDB header:hydrolase Chain: A: PDB Molecule:ser-thr phosphatase mspp; PDBTitle: crystal structure of the ppm ser-thr phosphatase mspp from2 mycobacterium smegmatis in complex with cacodylate 81 d2oqea3 not modelled 10.4 15 Fold:Cystatin-like Superfamily:Amine oxidase N-terminal region Family:Amine oxidase N-terminal region 82 c1eg0B_ not modelled 10.2 22 PDB header:ribosome PDB COMPND: 83 d1e4ea1 not modelled 10.2 18 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 84 d1o1xa_ not modelled 10.0 11 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 85 c2p3qA_ not modelled 9.9 22 PDB header:viral protein,transferase Chain: A: PDB Molecule:type ii methyltransferase; PDBTitle: crystal structure of dengue methyltransferase in complex with gpppg2 and s-adenosyl-l-homocysteine 86 d2bfwa1 not modelled 9.9 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 87 c3hp7A_ not modelled 9.9 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 88 c1uz5A_ not modelled 9.6 30 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 89 c2kpmA_ not modelled 9.6 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of uncharacterized protein from gene2 locus ne0665 of nitrosomonas europaea. northeast structural3 genomics target ner103a 90 c1wu2B_ not modelled 9.6 31 PDB header:structural genomics,biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein; PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3 91 c2jh3C_ not modelled 9.5 21 PDB header:ribosomal protein Chain: C: PDB Molecule:ribosomal protein s2-related protein; PDBTitle: the crystal structure of dr2241 from deinococcus2 radiodurans at 1.9 a resolution reveals a multi-domain3 protein with structural similarity to chelatases but also4 with two additional novel domains 92 c1b43A_ not modelled 9.3 16 PDB header:transferase Chain: A: PDB Molecule:protein (fen-1); PDBTitle: fen-1 from p. furiosus 93 c2wa1A_ not modelled 9.2 20 PDB header:transferase Chain: A: PDB Molecule:non-structural protein 5; PDBTitle: structure of the methyltransferase domain from modoc virus,2 a flavivirus with no known vector (nkv) 94 d1xo1a1 not modelled 9.1 10 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 95 c3s5pA_ not modelled 8.9 13 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia 96 d1p90a_ not modelled 8.9 17 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:Nitrogenase accessory factor 97 d1pdoa_ not modelled 8.8 25 Fold:PTS system fructose IIA component-like Superfamily:PTS system fructose IIA component-like Family:EIIA-man component-like 98 c3mtqA_ not modelled 8.6 24 PDB header:transferase Chain: A: PDB Molecule:putative phosphoenolpyruvate-dependent sugar PDBTitle: crystal structure of a putative phosphoenolpyruvate-dependent sugar2 phosphotransferase system (pts) permease (kpn_04802) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.70 a resolution 99 d3pmga2 not modelled 8.4 42 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0