13/01/2012 01:00:29 : INFO  : Run start: Fri Jan 13 01:00:27 GMT 2012
13/01/2012 01:00:36 : INFO  : Initialised job
13/01/2012 01:00:39 : INFO  : Renaming log file 'phyre2_20120113_010026.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/13addc5eb3f6a62d/phyre_20120113_010026.log'
13/01/2012 01:00:41 : INFO  : Initialised job:
Sequence
>batch____
MTRLTLALDVMGGDFGPSVTVPAALQALNSNSQLTLLLVGNSDAITPLLAKADFEQRSRL
QIIPAQSVIASDARPSQAIRASRGSSMRVALELVKEGRAQACVSAGNTGALMGLAKLLLK
PLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQFAIMGSVLAEEVVEIPNPRV
ALLNIGEEEVKGLDSIRDASAVLKTIPSINYIGYLEANELLTGKTDVLVCDGFTGNVTLK
TMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKSLTRRFSHLNPDQYNGACLLGLRGT
VIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAARLESVYPAGFELLDGGKSGTLR

13/01/2012 01:00:42 : INFO  : Checked sequence
13/01/2012 01:00:47 : INFO  : Finding homologues with PSI-BLAST
13/01/2012 01:00:48 : INFO  : PSI-BLAST 3 iterations
13/01/2012 01:02:45 : INFO  : PSI-BLAST 5 iterations
13/01/2012 01:04:45 : INFO  : Finished PSI-BLAST
13/01/2012 01:04:50 : INFO  : Running Buildali to generate a3m file
13/01/2012 01:13:31 : INFO  : Converting to HMM
13/01/2012 01:13:34 : INFO  : Calibrating HMM
13/01/2012 01:13:53 : INFO  : Searching HMM database
13/01/2012 01:20:46 : INFO  : Finished buildali
13/01/2012 01:20:48 : INFO  : Predicting secondary structure
13/01/2012 01:21:00 : INFO  : Predicted secondary structure (PSI-Pred)
13/01/2012 01:21:03 : INFO  : Predicting Disordered regions
13/01/2012 01:21:09 : INFO  : Predicted Disorder (Disopred)
13/01/2012 01:21:11 : INFO  : Running memsat_svm check
13/01/2012 01:27:34 : INFO  : Globular protein
13/01/2012 01:27:36 : INFO  : Predicted Transmembrane (memsat_svm) ID '13addc5eb3f6a62d'
13/01/2012 01:27:38 : INFO  : Initialising fold library search
13/01/2012 01:27:44 : INFO  : Initialised search input
13/01/2012 01:27:47 : INFO  : Building Ensemble models
13/01/2012 01:27:53 : INFO  : Building hh.d1u7na_.model.1.pdb
13/01/2012 01:28:16 : INFO  : Building hh.d1vi1a_.model.2.pdb
13/01/2012 01:28:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/13addc5eb3f6a62d/hh.d1vi1a_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/13addc5eb3f6a62d/d1vi1a_.2.pdb
13/01/2012 01:28:43 : INFO  : Building d1u7na_.1.pdb
13/01/2012 01:29:05 : INFO  : Building d1vi1a_.2.pdb
13/01/2012 01:29:27 : INFO  : Building d1xcoa_.3.pdb
13/01/2012 01:29:49 : INFO  : Building d2af4c1.4.pdb
13/01/2012 01:30:11 : INFO  : Building d1r5ja_.5.pdb
13/01/2012 01:30:34 : INFO  : Building c1ycoA_.6.pdb
13/01/2012 01:30:56 : INFO  : Building c3tngA_.7.pdb
13/01/2012 01:31:18 : INFO  : Building d1vmia_.8.pdb
13/01/2012 01:31:40 : INFO  : Building c1vmiA_.9.pdb
13/01/2012 01:32:02 : INFO  : Building d1ptma_.10.pdb
13/01/2012 01:32:23 : INFO  : Building c1yxoB_.11.pdb
13/01/2012 01:32:45 : INFO  : Building d1r8ka_.12.pdb
13/01/2012 01:33:07 : INFO  : Building c2hi1A_.13.pdb
13/01/2012 01:33:29 : INFO  : Building d1qgoa_.14.pdb
13/01/2012 01:33:50 : INFO  : Building d1gmla_.15.pdb
13/01/2012 01:34:12 : INFO  : Building c2phjA_.16.pdb
13/01/2012 01:34:32 : INFO  : Building c3qd5B_.17.pdb
13/01/2012 01:34:51 : INFO  : Building c3lyhB_.18.pdb
13/01/2012 01:35:10 : INFO  : Building c3gdwA_.19.pdb
13/01/2012 01:35:29 : INFO  : Building d1tjna_.20.pdb
13/01/2012 01:36:33 : INFO  : Finished HH model building
13/01/2012 01:36:35 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
13/01/2012 01:37:40 : INFO  : html domain output complete ID '13addc5eb3f6a62d'
13/01/2012 03:13:26 : INFO  : Run end  : Fri Jan 13 03:13:25 GMT 2012
