PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3k93A_

Fold library id	PDB Header	Molecule	Title
c3k93A_	PDB header: hydrolase	Chain: A: PDB Molecule: phage related exonuclease;	PDBTitle: crystal structure of phage related exonuclease (yp_719632.1)2 from haemophilus somnus 129pt at 2.15 a resolution

Links to external resources
Added to library: Sat Aug 28 16:55:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G X N N L Y H L K V R C S S L H K I I G E P K S K A D K E A G K L T D T A K S A V R E X A K F D L F G Y N A F E G N K Y T Q K G N E L E E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G
G G G
S S T T
S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A I K L S G V T R G L A L K K N T E R R E N E F I T G E C D I Y V P S R K L I I D T K C S W D I G S H P F F T D E A Q E K A K K A G Y D I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S G G G T
S S T T T S
S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence X Q G Y X W L W D C D Q A Q I D F V L F P T P L N L I S A Y D S D F K L I D L V E Q I P Q I R R I T T V I I Q R D N E L I D K I K E R V S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
G G G
T T S
T T S
G G G G

. . . . . . . . . 220 . . .

Sequence A Q K Y Y D Q L I S E X S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	X	N	N	L	Y	H	L	K	V	R	C	S	S	L	H	K	I	I	G	E	P	K	S	K	A	D	K	E	A	G	K	L	T	D	T	A	K	S	A	V	R	E	X	A	K	F	D	L	F	G	Y	N	A	F	E	G	N	K	Y	T	Q	K	G	N	E	L	E	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	G							G	G	G									S	S						T	T																							S													T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	I	K	L	S	G	V	T	R	G	L	A	L	K	K	N	T	E	R	R	E	N	E	F	I	T	G	E	C	D	I	Y	V	P	S	R	K	L	I	I	D	T	K	C	S	W	D	I	G	S	H	P	F	F	T	D	E	A	Q	E	K	A	K	K	A	G	Y	D	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T													S	S						S				G	G	G	T									S	S	T	T	T	S			S												T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	X	Q	G	Y	X	W	L	W	D	C	D	Q	A	Q	I	D	F	V	L	F	P	T	P	L	N	L	I	S	A	Y	D	S	D	F	K	L	I	D	L	V	E	Q	I	P	Q	I	R	R	I	T	T	V	I	I	Q	R	D	N	E	L	I	D	K	I	K	E	R	V	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T		S													G	G	G			T	T	S						T					T	S		G	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	A	Q	K	Y	Y	D	Q	L	I	S	E	X	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T