Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76658
DateThu Jan 5 12:25:18 GMT 2012
Unique Job ID0dba6e451d33be35

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3kzhA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:probable sugar kinase;
PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens
Confidence and coverage
Confidence:100.0% Coverage: 62%
298 residues ( 62% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
465 residues ( 97%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVNTIEERPGGAANVAMNI
Secondary structure 
SS confidence 
Disorder  ???
?
???
???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  ASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHPTITKLRVLSRNQQLIRLD
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  FEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASVQQMIQLARKAGVPVLIDPKG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  TDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMKLIADYELSALLVTRSEQGMSLL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  QPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAAGNSLEEACFFANAAAGVVVGKLGT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  STVSPIELENAVRGRADTGFGVMTEEELKLAVAAARKRGEKVVMTNGVFDILHAGHVSYL
Secondary structure 
SS confidence 
Disorder 
????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  ANARKLGDRLIVAVNSDASTKRLKGDSRPVNPLEQRMIVLGALEAVDWVVSFEEDTPQRL
Secondary structure 
SS confidence 
Disorder 
?
?
??
Disorder confidence 
 
   .........430.........440.........450.........460.........470.......
Sequence  IAGILPDLLVKGGDYKPEEIAGSKEVWANGGEVLVLNFEDGCSTTNIIKKIQQDKKG
Secondary structure 
SS confidence 
Disorder 
??
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3kzh chain A

3D model

Region: 9 - 316
Aligned: 298
Modelled: 308
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:probable sugar kinase;
PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens

Phyre2

PDB 1rkd chain A

3D model

Region: 11 - 316
Aligned: 299
Modelled: 306
Confidence: 100.0%
Identity: 22%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2

PDB 3pl2 chain D

3D model

Region: 9 - 312
Aligned: 290
Modelled: 304
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: D: PDB Molecule:sugar kinase, ribokinase family;
PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution

Phyre2

PDB 2qcv chain A

3D model

Region: 9 - 317
Aligned: 296
Modelled: 309
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase;
PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution

Phyre2

PDB 1bx4 chain A

3D model

Region: 8 - 307
Aligned: 300
Modelled: 300
Confidence: 100.0%
Identity: 16%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2

PDB 2xtb chain A

3D model

Region: 9 - 300
Aligned: 292
Modelled: 292
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:adenosine kinase;
PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator

Phyre2

PDB 2afb chain A domain 1

3D model

Region: 9 - 313
Aligned: 295
Modelled: 292
Confidence: 100.0%
Identity: 20%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2

PDB 2pkk chain A

3D model

Region: 9 - 314
Aligned: 288
Modelled: 303
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:adenosine kinase;
PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine

Phyre2

PDB 3loo chain C

3D model

Region: 8 - 296
Aligned: 285
Modelled: 289
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: C: PDB Molecule:anopheles gambiae adenosine kinase;
PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate

Phyre2

PDB 2rbc chain A

3D model

Region: 10 - 314
Aligned: 291
Modelled: 301
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:sugar kinase;
PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens

Phyre2

PDB 3cqd chain B

3D model

Region: 11 - 313
Aligned: 297
Modelled: 303
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2;
PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli

Phyre2

PDB 2nwh chain A

3D model

Region: 11 - 318
Aligned: 296
Modelled: 300
Confidence: 100.0%
Identity: 21%
PDB header:signaling protein,transferase
Chain: A: PDB Molecule:carbohydrate kinase;
PDBTitle: carbohydrate kinase from agrobacterium tumefaciens

Phyre2

PDB 2f02 chain A domain 1

3D model

Region: 13 - 314
Aligned: 294
Modelled: 297
Confidence: 100.0%
Identity: 20%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2

PDB 1v19 chain A

3D model

Region: 11 - 312
Aligned: 281
Modelled: 293
Confidence: 100.0%
Identity: 22%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2

PDB 2jg1 chain C

3D model

Region: 8 - 314
Aligned: 298
Modelled: 304
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: C: PDB Molecule:tagatose-6-phosphate kinase;
PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate

Phyre2

PDB 3ktn chain A

3D model

Region: 10 - 315
Aligned: 296
Modelled: 296
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:carbohydrate kinase, pfkb family;
PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis

Phyre2

PDB 3in1 chain A

3D model

Region: 12 - 316
Aligned: 295
Modelled: 305
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh;
PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli

Phyre2

PDB 3iq0 chain B

3D model

Region: 11 - 315
Aligned: 293
Modelled: 295
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:putative ribokinase ii;
PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli

Phyre2

PDB 3go6 chain B

3D model

Region: 10 - 315
Aligned: 274
Modelled: 286
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: B: PDB Molecule:ribokinase rbsk;
PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp

Phyre2

PDB 2abq chain A domain 1

3D model

Region: 12 - 314
Aligned: 291
Modelled: 302
Confidence: 100.0%
Identity: 21%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2

PDB 3elb chain A

3D model

Region: 339 - 476
Aligned: 135
Modelled: 131
Confidence: 100.0%
Identity: 30%
PDB header:transferase
Chain: A: PDB Molecule:ethanolamine-phosphate cytidylyltransferase;
PDBTitle: human ctp: phosphoethanolamine cytidylyltransferase in complex with2 cmp

Phyre2

PDB 3hl4 chain B

3D model

Region: 338 - 476
Aligned: 137
Modelled: 137
Confidence: 100.0%
Identity: 28%
PDB header:transferase
Chain: B: PDB Molecule:choline-phosphate cytidylyltransferase a;
PDBTitle: crystal structure of a mammalian ctp:phosphocholine2 cytidylyltransferase with cdp-choline

Phyre2

PDB 3ag5 chain A

3D model

Region: 322 - 410
Aligned: 83
Modelled: 83
Confidence: 98.6%
Identity: 23%
PDB header:ligase
Chain: A: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of pantothenate synthetase from staphylococcus2 aureus

Phyre2
1
c3kzhA_
2
d1rkda_
3
c3pl2D_
4
c2qcvA_
5
d1bx4a_
6
c2xtbA_
7
d2afba1
8
c2pkkA_
9
c3looC_
10
c2rbcA_
11
c3cqdB_
12
c2nwhA_
13
d2f02a1
14
d1v19a_
15
c2jg1C_
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c3ktnA_
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c3in1A_
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c3iq0B_
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c3go6B_
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d2abqa1
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c3elbA_
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c3hl4B_
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c3ag5A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3kzhA_
100.0 16 PDB header:transferase
Chain: A: PDB Molecule:probable sugar kinase;
PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens
2d1rkda_
100.0 22 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
3c3pl2D_
100.0 23 PDB header:transferase
Chain: D: PDB Molecule:sugar kinase, ribokinase family;
PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution
4c2qcvA_
100.0 16 PDB header:transferase
Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase;
PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution
5d1bx4a_
100.0 16 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
6c2xtbA_
100.0 18 PDB header:transferase
Chain: A: PDB Molecule:adenosine kinase;
PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator
7d2afba1
100.0 20 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
8c2pkkA_
100.0 22 PDB header:transferase
Chain: A: PDB Molecule:adenosine kinase;
PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine
9c3looC_
100.0 18 PDB header:transferase
Chain: C: PDB Molecule:anopheles gambiae adenosine kinase;
PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate
10c2rbcA_
100.0 19 PDB header:transferase
Chain: A: PDB Molecule:sugar kinase;
PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens
11c3cqdB_
100.0 23 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2;
PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli
12c2nwhA_
100.0 21 PDB header:signaling protein,transferase
Chain: A: PDB Molecule:carbohydrate kinase;
PDBTitle: carbohydrate kinase from agrobacterium tumefaciens
13d2f02a1
100.0 20 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
14d1v19a_
100.0 22 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
15c2jg1C_
100.0 17 PDB header:transferase
Chain: C: PDB Molecule:tagatose-6-phosphate kinase;
PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate
16c3ktnA_
100.0 14 PDB header:transferase
Chain: A: PDB Molecule:carbohydrate kinase, pfkb family;
PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis
17c3in1A_
100.0 19 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh;
PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli
18c3iq0B_
100.0 18 PDB header:transferase
Chain: B: PDB Molecule:putative ribokinase ii;
PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli
19c3go6B_
100.0 23 PDB header:transferase
Chain: B: PDB Molecule:ribokinase rbsk;
PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp
20d2abqa1
100.0 21 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
21d2absa1
not modelled 100.0 17 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
22c2absA_
not modelled 100.0 17 PDB header:signaling protein,transferase
Chain: A: PDB Molecule:adenosine kinase;
PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp
23d2fv7a1
not modelled 100.0 23 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
24c3b1qD_
not modelled 100.0 21 PDB header:transferase
Chain: D: PDB Molecule:ribokinase, putative;
PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine
25d1vm7a_
not modelled 100.0 25 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
26c2jg5B_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:fructose 1-phosphate kinase;
PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus
27c2varB_
not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:fructokinase;
PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate
28c3i3yB_
not modelled 100.0 23 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase;
PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae
29c2c49A_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:sugar kinase mj0406;
PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family
30d2dcna1
not modelled 100.0 17 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
31d2ajra1
not modelled 100.0 16 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
32c3lhxA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:ketodeoxygluconokinase;
PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri
33d1tyya_
not modelled 100.0 25 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
34c3lkiA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa
35c3gbuD_
not modelled 100.0 20 PDB header:transferase
Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459;
PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp
36c2qhpA_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution
37c3julA_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:lin2199 protein;
PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate
38c3kd6B_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, pfkb family;
PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp
39c3b3lC_
not modelled 100.0 18 PDB header:transferase
Chain: C: PDB Molecule:ketohexokinase;
PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase
40c1tz6B_
not modelled 100.0 25 PDB header:transferase
Chain: B: PDB Molecule:putative sugar kinase;
PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog
41c3elbA_
100.0 30 PDB header:transferase
Chain: A: PDB Molecule:ethanolamine-phosphate cytidylyltransferase;
PDBTitle: human ctp: phosphoethanolamine cytidylyltransferase in complex with2 cmp
42d1vk4a_
not modelled 100.0 18 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Ribokinase-like
43c3bf5A_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:ribokinase related protein;
PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution
44c3hj6B_
not modelled 100.0 20 PDB header:transferase
Chain: B: PDB Molecule:fructokinase;
PDBTitle: structure of halothermothrix orenii fructokinase (frk)
45c3hl4B_
100.0 28 PDB header:transferase
Chain: B: PDB Molecule:choline-phosphate cytidylyltransferase a;
PDBTitle: crystal structure of a mammalian ctp:phosphocholine2 cytidylyltransferase with cdp-choline
46c3glvB_
not modelled 99.9 31 PDB header:biosynthetic protein
Chain: B: PDB Molecule:lipopolysaccharide core biosynthesis protein;
PDBTitle: crystal structure of the lipopolysaccharide core biosynthesis protein2 from thermoplasma volcanium gss1
47d1coza_
not modelled 99.9 32 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Cytidylyltransferase
48c2b7lD_
not modelled 99.9 31 PDB header:transferase
Chain: D: PDB Molecule:glycerol-3-phosphate cytidylyltransferase;
PDBTitle: crystal structure of ctp:glycerol-3-phosphate2 cytidylyltransferase from staphylococcus aureus
49c2ddmA_
not modelled 99.9 22 PDB header:transferase
Chain: A: PDB Molecule:pyridoxine kinase;
PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution
50d1mrza2
not modelled 99.8 23 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
51c1t6zB_
not modelled 99.8 22 PDB header:transferase
Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase;
PDBTitle: crystal structure of riboflavin bound tm379
52c3op1A_
not modelled 99.8 28 PDB header:transferase
Chain: A: PDB Molecule:macrolide-efflux protein;
PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae
53c2x0kB_
not modelled 99.8 19 PDB header:transferase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf;
PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes
54d1vi9a_
not modelled 99.8 21 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:PfkB-like kinase
55c2i5bC_
not modelled 99.7 19 PDB header:transferase
Chain: C: PDB Molecule:phosphomethylpyrimidine kinase;
PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution
56c3mbjA_
not modelled 99.7 18 PDB header:transferase
Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase;
PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form)
57d1ub0a_
not modelled 99.7 24 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Thiamin biosynthesis kinases
58c3rm5B_
not modelled 99.7 20 PDB header:transferase
Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
PDBTitle: structure of trifunctional thi20 from yeast
59d1lhpa_
not modelled 99.7 20 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:PfkB-like kinase
60c3ibqA_
not modelled 99.7 16 PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase;
PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp
61c3do8B_
not modelled 99.6 20 PDB header:transferase
Chain: B: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: the crystal structure of the protein with unknown function2 from archaeoglobus fulgidus
62d1jxha_
not modelled 99.6 19 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Thiamin biosynthesis kinases
63d1qjca_
not modelled 99.5 18 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
64c3f3mA_
not modelled 99.5 17 PDB header:transferase
Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: six crystal structures of two phosphopantetheine2 adenylyltransferases reveal an alternative ligand binding3 mode and an associated structural change
65c3nd5D_
not modelled 99.5 18 PDB header:transferase
Chain: D: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase (ppat)2 from enterococcus faecalis
66c3ikzA_
not modelled 99.5 20 PDB header:transferase
Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of phosphopantetheine adenylyltransferase from2 burkholderia pseudomallei
67c3nv7A_
not modelled 99.5 22 PDB header:transferase
Chain: A: PDB Molecule:phosphopantetheine adenylyltransferase;
PDBTitle: crystal structure of h.pylori phosphopantetheine adenylyltransferase2 mutant i4v/n76y
68d1od6a_
not modelled 99.5 22 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
69c3dzvB_
not modelled 99.5 20 PDB header:transferase
Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase;
PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution
70d1tfua_
not modelled 99.5 13 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
71d1o6ba_
not modelled 99.4 13 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
72d1vlha_
not modelled 99.4 20 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
73c3guzB_
not modelled 99.4 21 PDB header:ligase
Chain: B: PDB Molecule:pantothenate synthetase;
PDBTitle: structural and substrate-binding studies of pantothenate2 synthenate (ps)provide insights into homotropic inhibition3 by pantoate in ps's
74d1v8aa_
not modelled 99.4 20 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Thiamin biosynthesis kinases
75d1kyha_
not modelled 99.3 19 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:YjeF C-terminal domain-like
76c3h05A_
not modelled 99.3 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein vpa0413;
PDBTitle: the crystal structure of a putative nicotinate-nucleotide2 adenylyltransferase from vibrio parahaemolyticus
77d1lw7a1
not modelled 99.3 18 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
78c2qjoB_
not modelled 99.3 18 PDB header:transferase, hydrolase
Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase;
PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp.
79c2r5wA_
not modelled 99.2 17 PDB header:hydrolase, transferase
Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase;
PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis
80d1ej2a_
not modelled 99.2 18 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
81d1f9aa_
not modelled 99.2 15 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
82d2ax3a1
not modelled 99.2 14 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:YjeF C-terminal domain-like
83c2h29A_
not modelled 99.2 17 PDB header:transferase
Chain: A: PDB Molecule:probable nicotinate-nucleotide
PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from staphylococcus aureus: product3 bound form 1
84d1ekqa_
not modelled 99.1 24 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:Thiamin biosynthesis kinases
85c3e27B_
not modelled 99.0 20 PDB header:transferase
Chain: B: PDB Molecule:nicotinate (nicotinamide) nucleotide
PDBTitle: nicotinic acid mononucleotide (namn) adenylyltransferase2 from bacillus anthracis: product complex
86c1yunB_
not modelled 99.0 23 PDB header:transferase
Chain: B: PDB Molecule:probable nicotinate-nucleotide
PDBTitle: crystal structure of nicotinic acid mononucleotide2 adenylyltransferase from pseudomonas aeruginosa
87c2r3bA_
not modelled 99.0 18 PDB header:transferase
Chain: A: PDB Molecule:yjef-related protein;
PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution
88c1lw7A_
not modelled 99.0 17 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulator nadr;
PDBTitle: nadr protein from haemophilus influenzae
89c2ax3A_
not modelled 98.9 13 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein tm0922;
PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution
90d1kama_
not modelled 98.9 20 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
91d1k4ma_
not modelled 98.8 21 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
92c3nm3D_
not modelled 98.7 14 PDB header:transferase
Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme;
PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes
93d1kr2a_
not modelled 98.7 17 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
94d1nuua_
not modelled 98.7 21 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
95c3ag5A_
98.6 23 PDB header:ligase
Chain: A: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of pantothenate synthetase from staphylococcus2 aureus
96d1gc5a_
not modelled 98.6 15 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:ADP-specific Phosphofructokinase/Glucokinase
97c2ejcA_
not modelled 98.6 26 PDB header:ligase
Chain: A: PDB Molecule:pantoate--beta-alanine ligase;
PDBTitle: crystal structure of pantoate--beta-alanine ligase (panc)2 from thermotoga maritima
98d1ihoa_
not modelled 98.5 25 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
99c3gmiA_
not modelled 98.4 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0348 protein mj0951;
PDBTitle: crystal structure of a protein of unknown function from2 methanocaldococcus jannaschii
100d1l2la_
not modelled 98.4 16 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:ADP-specific Phosphofructokinase/Glucokinase
101c3k5wA_
not modelled 98.4 17 PDB header:transferase
Chain: A: PDB Molecule:carbohydrate kinase;
PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori
102c3innB_
not modelled 98.4 29 PDB header:ligase
Chain: B: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of pantoate-beta-alanine-ligase in complex2 with atp at low occupancy at 2.1 a resolution
103c3bgkA_
not modelled 98.4 17 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans
104d1ua4a_
not modelled 98.3 20 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:ADP-specific Phosphofructokinase/Glucokinase
105d1u2xa_
not modelled 98.3 16 Fold:Ribokinase-like
Superfamily:Ribokinase-like
Family:ADP-specific Phosphofructokinase/Glucokinase
106c3mxtA_
not modelled 98.3 19 PDB header:ligase
Chain: A: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of pantoate-beta-alanine ligase from campylobacter2 jejuni
107d2a84a1
not modelled 98.3 18 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
108c3drwA_
not modelled 98.2 18 PDB header:transferase
Chain: A: PDB Molecule:adp-specific phosphofructokinase;
PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp
109c3n8hA_
not modelled 98.2 26 PDB header:ligase
Chain: A: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of pantoate-beta-alanine ligase from francisella2 tularensis
110c3uk2B_
not modelled 98.1 18 PDB header:ligase
Chain: B: PDB Molecule:pantothenate synthetase;
PDBTitle: the structure of pantothenate synthetase from burkholderia2 thailandensis
111d1v8fa_
not modelled 98.0 26 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
112c1r6uB_
not modelled 91.8 12 PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of an active fragment of human tryptophanyl-trna2 synthetase with cytokine activity
113c2f00A_
not modelled 89.9 27 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
114d1r6ta2
not modelled 86.9 16 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
115d1v47a2
not modelled 83.9 23 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
116d1jhda2
not modelled 83.8 15 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain
117c3i3lA_
not modelled 83.6 29 PDB header:hydrolase
Chain: A: PDB Molecule:alkylhalidase cmls;
PDBTitle: crystal structure of cmls, a flavin-dependent halogenase
118c3i05B_
not modelled 81.8 15 PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase from trypanosoma brucei
119c3hv0A_
not modelled 81.2 16 PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase from cryptosporidium parvum
120d1g8fa2
not modelled 79.5 14 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:ATP sulfurylase catalytic domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0