Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	L	I	P	L	T	T	A	E	Q	V	G	K	W	A	A	R	H	I	V	N	R	I	N	A	F	K	P	T	A	D	R	P	F	V	L	G	L	P	T	G	G	T	P	M	T	T	Y	K	A	L	V	E	M	H	K	A	G	Q
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	S	F	K	H	V	V	T	F	N	M	D	E	Y	V	G	L	P	K	E	H	P	E	S	Y	Y	S	F	M	H	R	N	F	F	D	H	V	D	I	P	A	E	N	I	N	L	L	N	G	N	A	P	D	I	D	A	E	C	R	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	E	E	K	I	R	S	Y	G	K	I	H	L	F	M	G	G	V	G	N	D	G	H	I	A	F	N	E	P	A	S	S	L	A	S	R	T	R	I	K	T	L	T	H	D	T	R	V	A	N	S	R	F	F	D	N	D	V	N	Q
Secondary structure
SS confidence
Disorder																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	P	K	Y	A	L	T	V	G	V	G	T	L	L	D	A	E	E	V	M	I	L	V	L	G	S	Q	K	A	L	A	L	Q	A	A	V	E	G	C	V	N	H	M	W	T	I	S	C	L	Q	L	H	P	K	A	I	M	V	C	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Sequence		E	P	S	T	M	E	L	K	V	K	T	L	R	Y	F	N	E	L	E	A	E	N	I	K	G	L
Secondary structure
SS confidence
Disorder						?		?													?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1fsf chain A Region: 1 - 266 Aligned: 266 Modelled: 266 Confidence: 100.0% Identity: 100% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: NagB-like Phyre2 PDB 1ne7 chain A Region: 1 - 266 Aligned: 266 Modelled: 266 Confidence: 100.0% Identity: 58% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: NagB-like Phyre2 PDB 3hn6 chain D Region: 1 - 262 Aligned: 262 Modelled: 262 Confidence: 100.0% Identity: 61% PDB header:isomerase Chain: D: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine-6-phosphate deaminase from borrelia2 burgdorferi Phyre2 PDB 2j0e chain A Region: 1 - 248 Aligned: 239 Modelled: 247 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei Phyre2 PDB 3ico chain A Region: 2 - 247 Aligned: 231 Modelled: 246 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from2 mycobacterium tuberculosis Phyre2 PDB 3oc6 chain A Region: 2 - 247 Aligned: 231 Modelled: 235 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 smegmatis, apo form Phyre2 PDB 1y89 chain B Region: 1 - 248 Aligned: 228 Modelled: 247 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:devb protein; PDBTitle: crystal structure of devb protein Phyre2 PDB 3e15 chain D Region: 1 - 239 Aligned: 236 Modelled: 239 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: D: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: 6-phosphogluconolactonase from plasmodium vivax Phyre2 PDB 1pbt chain A Region: 2 - 241 Aligned: 217 Modelled: 227 Confidence: 100.0% Identity: 20% PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: the crystal structure of tm1154, oxidoreductase, sol/devb2 family from thermotoga maritima Phyre2 PDB 3css chain A Region: 2 - 248 Aligned: 234 Modelled: 237 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from leishmania2 guyanensis Phyre2 PDB 1vl1 chain A Region: 2 - 241 Aligned: 217 Modelled: 227 Confidence: 100.0% Identity: 19% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: NagB-like Phyre2 PDB 3lwd chain A Region: 6 - 239 Aligned: 218 Modelled: 234 Confidence: 100.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-phosphogluconolactonase (yp_574786.1)2 from chromohalobacter salexigens dsm 3043 at 1.88 a resolution Phyre2 PDB 3lhi chain A Region: 2 - 239 Aligned: 224 Modelled: 238 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:putative 6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution Phyre2 PDB 2bkx chain B Region: 1 - 247 Aligned: 241 Modelled: 247 Confidence: 100.0% Identity: 38% PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily Phyre2 PDB 3nwp chain A Region: 3 - 243 Aligned: 226 Modelled: 241 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of a 6-phosphogluconolactonase (sbal_2240) from2 shewanella baltica os155 at 1.40 a resolution Phyre2 PDB 2ri0 chain B Region: 1 - 247 Aligned: 233 Modelled: 247 Confidence: 100.0% Identity: 36% PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans Phyre2 PDB 2gnp chain A domain 1 Region: 7 - 247 Aligned: 217 Modelled: 237 Confidence: 99.7% Identity: 11% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: SorC sugar-binding domain-like Phyre2 PDB 2w48 chain D Region: 7 - 247 Aligned: 218 Modelled: 239 Confidence: 99.6% Identity: 10% PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae Phyre2 PDB 3nze chain B Region: 7 - 247 Aligned: 218 Modelled: 232 Confidence: 99.5% Identity: 14% PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family; PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1. Phyre2 PDB 2o0m chain A Region: 10 - 247 Aligned: 210 Modelled: 211 Confidence: 99.5% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, sorc family; PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis Phyre2 1 d1fsfa_ 2 d1ne7a_ 3 c3hn6D_ 4 c2j0eA_ 5 c3icoA_ 6 c3oc6A_ 7 c1y89B_ 8 c3e15D_ 9 c1pbtA_ 10 c3cssA_ 11 d1vl1a_ 12 c3lwdA_ 13 c3lhiA_ 14 c2bkxB_ 15 c3nwpA_ 16 c2ri0B_ 17 d2gnpa1 18 c2w48D_ 19 c3nzeB_ 20 c2o0mA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1fsfa_ 100.0 100 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like 2 d1ne7a_ 100.0 58 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like 3 c3hn6D_ 100.0 61 PDB header:isomerase Chain: D: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine-6-phosphate deaminase from borrelia2 burgdorferi 4 c2j0eA_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei 5 c3icoA_ 100.0 23 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from2 mycobacterium tuberculosis 6 c3oc6A_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 smegmatis, apo form 7 c1y89B_ 100.0 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:devb protein; PDBTitle: crystal structure of devb protein 8 c3e15D_ 100.0 19 PDB header:hydrolase Chain: D: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: 6-phosphogluconolactonase from plasmodium vivax 9 c1pbtA_ 100.0 20 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: the crystal structure of tm1154, oxidoreductase, sol/devb2 family from thermotoga maritima 10 c3cssA_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of 6-phosphogluconolactonase from leishmania2 guyanensis 11 d1vl1a_ 100.0 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:NagB-like 12 c3lwdA_ 100.0 19 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-phosphogluconolactonase (yp_574786.1)2 from chromohalobacter salexigens dsm 3043 at 1.88 a resolution 13 c3lhiA_ 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:putative 6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution 14 c2bkxB_ 100.0 38 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: structure and kinetics of a monomeric glucosamine-6-2 phosphate deaminase: missing link of the nagb superfamily 15 c3nwpA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: crystal structure of a 6-phosphogluconolactonase (sbal_2240) from2 shewanella baltica os155 at 1.40 a resolution 16 c2ri0B_ 100.0 36 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans 17 d2gnpa1 99.7 11 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 18 c2w48D_ 99.6 10 PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae 19 c3nzeB_ 99.5 14 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family; PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1. 20 c2o0mA_ 99.5 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, sorc family; PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis 21 d2o0ma1 not modelled 99.5 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 22 d3efba1 not modelled 99.5 11 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 23 d2okga1 not modelled 98.9 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 24 c3kv1A_ not modelled 98.4 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri 25 d2r5fa1 not modelled 98.3 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 26 c2e21A_ not modelled 83.8 12 PDB header:ligase Chain: A: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus. 27 c3a2kB_ not modelled 81.9 12 PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna 28 d1ni5a1 not modelled 67.8 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 29 c2goyC_ not modelled 64.7 8 PDB header:oxidoreductase Chain: C: PDB Molecule:adenosine phosphosulfate reductase; PDBTitle: crystal structure of assimilatory adenosine 5'-2 phosphosulfate reductase with bound aps 30 d1wxia1 not modelled 51.1 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 31 d1xnga1 not modelled 44.4 9 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 32 d1kqpa_ not modelled 43.9 22 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 33 c1ni5A_ not modelled 39.2 13 PDB header:cell cycle Chain: A: PDB Molecule:putative cell cycle protein mesj; PDBTitle: structure of the mesj pp-atpase from escherichia coli 34 c2i2aA_ not modelled 38.6 8 PDB header:transferase Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1; PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes 35 d1sura_ not modelled 38.0 9 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like 36 c1mwmA_ not modelled 35.6 14 PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form 37 d1pjqa3 not modelled 32.7 19 Fold:Siroheme synthase middle domains-like Superfamily:Siroheme synthase middle domains-like Family:Siroheme synthase middle domains-like 38 d1wy5a1 not modelled 32.3 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 39 c3u7jA_ not modelled 31.0 18 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 40 c2o8vA_ not modelled 30.2 9 PDB header:oxidoreductase Chain: A: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: paps reductase in a covalent complex with thioredoxin c35a 41 d2zgya2 not modelled 26.5 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 42 c3dpiA_ not modelled 26.2 11 PDB header:ligase Chain: A: PDB Molecule:nad+ synthetase; PDBTitle: crystal structure of nad+ synthetase from burkholderia pseudomallei 43 c3q4gA_ not modelled 26.2 16 PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae 44 d3clsc1 not modelled 25.4 19 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 45 c3p52B_ not modelled 25.2 9 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: nh3-dependent nad synthetase from campylobacter jejuni subsp. jejuni2 nctc 11168 in complex with the nitrate ion 46 c1zunA_ not modelled 24.2 12 PDB header:transferase Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2; PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae 47 c2pjmA_ not modelled 23.9 21 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 48 c3fiuD_ not modelled 23.7 8 PDB header:ligase Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nmn synthetase from francisella tularensis 49 d1a7ja_ not modelled 23.5 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 50 c1xhoB_ not modelled 22.3 8 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:chorismate mutase; PDBTitle: chorismate mutase from clostridium thermocellum cth-682 51 d1xhoa_ not modelled 22.3 8 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 52 c3sftA_ not modelled 21.1 25 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of thermotoga maritima cheb methylesterase catalytic2 domain 53 c3hheA_ not modelled 18.4 24 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae 54 c3l7oB_ not modelled 18.0 17 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 55 d1wd5a_ not modelled 17.1 28 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 56 d1rp0a1 not modelled 15.9 16 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Thi4-like 57 c1lk5C_ not modelled 15.8 35 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 58 c1gpmD_ not modelled 15.8 21 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 59 d1zuna1 not modelled 15.0 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like 60 c3uowB_ not modelled 14.9 17 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 61 c2z5eA_ not modelled 13.3 24 PDB header:chaperone Chain: A: PDB Molecule:proteasome assembling chaperone 3; PDBTitle: crystal structure of proteasome assembling chaperone 3 62 d2fvta1 not modelled 13.1 22 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 63 c1xtzA_ not modelled 12.7 22 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes 64 c3tqiB_ not modelled 12.5 15 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 65 d1odfa_ not modelled 12.3 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 66 d1dbfa_ not modelled 11.9 11 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 67 c2vawA_ not modelled 11.8 27 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz pseudomonas aeruginosa gdp 68 d1ydha_ not modelled 11.7 23 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 69 c3kwmC_ not modelled 11.6 27 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 70 c1dd9A_ not modelled 11.4 18 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 71 d1dd9a_ not modelled 11.4 18 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 72 c2q4dB_ not modelled 11.3 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 73 c2r5kE_ not modelled 11.2 25 PDB header:viral protein Chain: E: PDB Molecule:major capsid protein l1; PDBTitle: pentamer structure of major capsid protein l1 of human2 papilloma virus type 11 74 c1x1qA_ not modelled 11.1 2 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 75 d2vapa1 not modelled 11.0 24 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 76 c2pv0A_ not modelled 10.9 19 PDB header:transferase regulator Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3-like; PDBTitle: dna methyltransferase 3 like protein (dnmt3l) 77 c2dplA_ not modelled 10.8 16 PDB header:ligase Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b; PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3 78 c3maxB_ not modelled 10.8 13 PDB header:hydrolase Chain: B: PDB Molecule:histone deacetylase 2; PDBTitle: crystal structure of human hdac2 complexed with an n-(2-aminophenyl)2 benzamide 79 d1rq2a1 not modelled 10.6 24 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 80 d1h9aa1 not modelled 10.2 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 81 c2q1yB_ not modelled 10.0 24 PDB header:cell cycle, signaling protein Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: crystal structure of cell division protein ftsz from mycobacterium2 tuberculosis in complex with gtp-gamma-s 82 d1k92a1 not modelled 10.0 6 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 83 d1r6ea_ not modelled 9.9 12 Fold:SopE-like GEF domain Superfamily:SopE-like GEF domain Family:SopE-like GEF domain 84 c1dzlA_ not modelled 9.7 50 PDB header:virus Chain: A: PDB Molecule:late major capsid protein l1; PDBTitle: l1 protein of human papillomavirus 16 85 d1dzla_ not modelled 9.7 50 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group I dsDNA viruses Family:Papovaviridae-like VP 86 d1ofua1 not modelled 9.7 29 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 87 c2r5iL_ not modelled 9.4 25 PDB header:viral protein Chain: L: PDB Molecule:l1 protein; PDBTitle: pentamer structure of major capsid protein l1 of human2 papilloma virus type 18 88 c1ofuB_ not modelled 9.4 27 PDB header:bacterial cell division inhibitor Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: crystal structure of sula:ftsz from pseudomonas aeruginosa 89 c1a2oB_ not modelled 9.3 50 PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain 90 d2uz9a1 not modelled 9.3 47 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:SAH/MTA deaminase-like 91 c3c8uA_ not modelled 9.3 15 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution 92 d1ufya_ not modelled 9.2 14 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 93 c3ewbX_ not modelled 9.2 13 PDB header:transferase Chain: X: PDB Molecule:2-isopropylmalate synthase; PDBTitle: crystal structure of n-terminal domain of putative 2-2 isopropylmalate synthase from listeria monocytogenes 94 c2gfqC_ not modelled 8.9 21 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii 95 c1uj6A_ not modelled 8.8 27 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 96 d3bzka5 not modelled 8.8 11 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 97 d1chda_ not modelled 8.7 50 Fold:Methylesterase CheB, C-terminal domain Superfamily:Methylesterase CheB, C-terminal domain Family:Methylesterase CheB, C-terminal domain 98 c2oq2B_ not modelled 8.7 11 PDB header:oxidoreductase Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: crystal structure of yeast paps reductase with pap, a product complex 99 d2ftwa1 not modelled 8.6 38 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0