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The batch processing feature now permits users to submit more than
one sequence to Phyre by uploading a file of sequences in FASTA
format. By default, users have a limit of 100 sequences in a batch. If
you require this limit to be raised, please contact me (Harry Powell)
Batch jobs are processed in the background on free computing power
as it becomes available. Thus, batch jobs will often take longer than
individually submitted jobs, but this is necessary to allow a fair
ditribution of computing resources to all Phyre users. In addition,
users are only permitted to have one active batch job at a time. Once
your batch job is completed, or stopped by you, you will be permitted
to submit a new batch job.
Finally, it should be noted that batch sequences can currently only
run in 'normal' mode and not 'intensive' mode to conserve computing resources.
Format of sequences
>P31946
MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTERNEKKQQMGKEYREKIEAELQ
DICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV
FYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEGEN
>P62258
MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVETEL
KLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS
VFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGEEQNKEALQDVEDENQ
>Q04917
MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKLEKVKAYREKIEKEL
ETVCNDVLSLLDKFLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALN
FSVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDEEAGEGN
>P61981
MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKE
LEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALN
YSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGNN
Sequences do not need to have carriage returns after a certain
number of residues. Carriage returns and spaces in the sequence are
ignored. Simply ensure each sequence has an associated identifier preceded by a '>' character.
Upon uploading your file, the Phyre server will display how it has
interpreted the data before you confirm job submission. Please ensure
your sequences have been parsed correctly before confirming final submission.
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