Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0C0V7
DateTue Jul 17 17:05:08 BST 2012
Unique Job IDc896433374b5eb81

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3pdkB_
Top template information
PDB header:isomerase
Chain: B: PDB Molecule:phosphoglucosamine mutase;
PDBTitle: crystal structure of phosphoglucosamine mutase from b. anthracis
Confidence and coverage
Confidence:100.0% Coverage: 98%
444 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLES
Secondary structure 
SS confidence 
Disorder  ??????
?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  ALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFK
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIAL
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  DGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  FDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEG
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  IKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.
Sequence  RVMVEAATDEDAERFAQQIADVVQDKMGLDK
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3pdk chain B

3D model

Region: 3 - 448
Aligned: 444
Modelled: 446
Confidence: 100.0%
Identity: 68%
PDB header:isomerase
Chain: B: PDB Molecule:phosphoglucosamine mutase;
PDBTitle: crystal structure of phosphoglucosamine mutase from b. anthracis

Phyre2

PDB 1wqa chain B

3D model

Region: 1 - 448
Aligned: 441
Modelled: 448
Confidence: 100.0%
Identity: 34%
PDB header:isomerase
Chain: B: PDB Molecule:phospho-sugar mutase;
PDBTitle: crystal structure of pyrococcus horikoshii2 phosphomannomutase/phosphoglucomutase complexed with mg2+

Phyre2

PDB 2f7l chain A

3D model

Region: 1 - 444
Aligned: 436
Modelled: 444
Confidence: 100.0%
Identity: 30%
PDB header:isomerase
Chain: A: PDB Molecule:455aa long hypothetical phospho-sugar mutase;
PDBTitle: crystal structure of sulfolobus tokodaii2 phosphomannomutase/phosphoglucomutase

Phyre2

PDB 3i3w chain B

3D model

Region: 3 - 447
Aligned: 437
Modelled: 442
Confidence: 100.0%
Identity: 38%
PDB header:isomerase
Chain: B: PDB Molecule:phosphoglucosamine mutase;
PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis

Phyre2

PDB 3c04 chain A

3D model

Region: 3 - 448
Aligned: 430
Modelled: 435
Confidence: 100.0%
Identity: 26%
PDB header:isomerase
Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase;
PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa

Phyre2

PDB 3uw2 chain A

3D model

Region: 1 - 446
Aligned: 430
Modelled: 435
Confidence: 100.0%
Identity: 25%
PDB header:isomerase
Chain: A: PDB Molecule:phosphoglucomutase/phosphomannomutase family protein;
PDBTitle: x-ray crystal structure of phosphoglucomutase/phosphomannomutase2 family protein (bth_i1489)from burkholderia thailandensis

Phyre2

PDB 1tuo chain A

3D model

Region: 3 - 444
Aligned: 423
Modelled: 439
Confidence: 100.0%
Identity: 25%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative phosphomannomutase;
PDBTitle: crystal structure of putative phosphomannomutase from2 thermus thermophilus hb8

Phyre2

PDB 2fuv chain B

3D model

Region: 3 - 449
Aligned: 443
Modelled: 447
Confidence: 100.0%
Identity: 19%
PDB header:isomerase
Chain: B: PDB Molecule:phosphoglucomutase;
PDBTitle: phosphoglucomutase from salmonella typhimurium.

Phyre2

PDB 1c4g chain B

3D model

Region: 5 - 449
Aligned: 443
Modelled: 445
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:protein (alpha-d-glucose 1-phosphate
PDBTitle: phosphoglucomutase vanadate based transition state analog2 complex

Phyre2

PDB 2z0f chain A

3D model

Region: 1 - 448
Aligned: 422
Modelled: 425
Confidence: 100.0%
Identity: 20%
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphoglucomutase;
PDBTitle: crystal structure of putative phosphoglucomutase from thermus2 thermophilus hb8

Phyre2

PDB 1kfi chain A

3D model

Region: 5 - 449
Aligned: 443
Modelled: 444
Confidence: 100.0%
Identity: 21%
PDB header:isomerase
Chain: A: PDB Molecule:phosphoglucomutase 1;
PDBTitle: crystal structure of the exocytosis-sensitive2 phosphoprotein, pp63/parafusin (phosphoglucomutase) from3 paramecium

Phyre2

PDB 2dkd chain A

3D model

Region: 26 - 444
Aligned: 402
Modelled: 405
Confidence: 100.0%
Identity: 24%
PDB header:isomerase
Chain: A: PDB Molecule:phosphoacetylglucosamine mutase;
PDBTitle: crystal structure of n-acetylglucosamine-phosphate mutase,2 a member of the alpha-d-phosphohexomutase superfamily, in3 the product complex

Phyre2

PDB 1p5d chain X domain 1

3D model

Region: 3 - 139
Aligned: 133
Modelled: 134
Confidence: 100.0%
Identity: 31%
Fold: Phosphoglucomutase, first 3 domains
Superfamily: Phosphoglucomutase, first 3 domains
Family: Phosphoglucomutase, first 3 domains

Phyre2

PDB 1kfi chain A domain 1

3D model

Region: 2 - 135
Aligned: 134
Modelled: 134
Confidence: 100.0%
Identity: 22%
Fold: Phosphoglucomutase, first 3 domains
Superfamily: Phosphoglucomutase, first 3 domains
Family: Phosphoglucomutase, first 3 domains

Phyre2

PDB 3pmg chain A domain 1

3D model

Region: 2 - 135
Aligned: 132
Modelled: 134
Confidence: 100.0%
Identity: 24%
Fold: Phosphoglucomutase, first 3 domains
Superfamily: Phosphoglucomutase, first 3 domains
Family: Phosphoglucomutase, first 3 domains

Phyre2

PDB 1p5d chain X domain 3

3D model

Region: 259 - 368
Aligned: 108
Modelled: 110
Confidence: 99.9%
Identity: 15%
Fold: Phosphoglucomutase, first 3 domains
Superfamily: Phosphoglucomutase, first 3 domains
Family: Phosphoglucomutase, first 3 domains

Phyre2

PDB 3pmg chain A domain 3

3D model

Region: 259 - 372
Aligned: 113
Modelled: 114
Confidence: 99.9%
Identity: 14%
Fold: Phosphoglucomutase, first 3 domains
Superfamily: Phosphoglucomutase, first 3 domains
Family: Phosphoglucomutase, first 3 domains

Phyre2

PDB 1p5d chain X domain 2

3D model

Region: 157 - 258
Aligned: 101
Modelled: 102
Confidence: 99.9%
Identity: 30%
Fold: Phosphoglucomutase, first 3 domains
Superfamily: Phosphoglucomutase, first 3 domains
Family: Phosphoglucomutase, first 3 domains

Phyre2

PDB 1kfi chain A domain 3

3D model

Region: 243 - 372
Aligned: 113
Modelled: 114
Confidence: 99.9%
Identity: 19%
Fold: Phosphoglucomutase, first 3 domains
Superfamily: Phosphoglucomutase, first 3 domains
Family: Phosphoglucomutase, first 3 domains

Phyre2

PDB 3pmg chain A domain 2

3D model

Region: 158 - 258
Aligned: 101
Modelled: 101
Confidence: 99.8%
Identity: 30%
Fold: Phosphoglucomutase, first 3 domains
Superfamily: Phosphoglucomutase, first 3 domains
Family: Phosphoglucomutase, first 3 domains

Phyre2
1
c3pdkB_
2
c1wqaB_
3
c2f7lA_
4
c3i3wB_
5
c3c04A_
6
c3uw2A_
7
c1tuoA_
8
c2fuvB_
9
c1c4gB_
10
c2z0fA_
11
c1kfiA_
12
c2dkdA_
13
d1p5dx1
14
d1kfia1
15
d3pmga1
16
d1p5dx3
17
d3pmga3
18
d1p5dx2
19
d1kfia3
20
d3pmga2
21
22
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3pdkB_
100.0 68 PDB header:isomerase
Chain: B: PDB Molecule:phosphoglucosamine mutase;
PDBTitle: crystal structure of phosphoglucosamine mutase from b. anthracis
2c1wqaB_
100.0 34 PDB header:isomerase
Chain: B: PDB Molecule:phospho-sugar mutase;
PDBTitle: crystal structure of pyrococcus horikoshii2 phosphomannomutase/phosphoglucomutase complexed with mg2+
3c2f7lA_
100.0 30 PDB header:isomerase
Chain: A: PDB Molecule:455aa long hypothetical phospho-sugar mutase;
PDBTitle: crystal structure of sulfolobus tokodaii2 phosphomannomutase/phosphoglucomutase
4c3i3wB_
100.0 38 PDB header:isomerase
Chain: B: PDB Molecule:phosphoglucosamine mutase;
PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis
5c3c04A_
100.0 26 PDB header:isomerase
Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase;
PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa
6c3uw2A_
100.0 25 PDB header:isomerase
Chain: A: PDB Molecule:phosphoglucomutase/phosphomannomutase family protein;
PDBTitle: x-ray crystal structure of phosphoglucomutase/phosphomannomutase2 family protein (bth_i1489)from burkholderia thailandensis
7c1tuoA_
100.0 25 PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative phosphomannomutase;
PDBTitle: crystal structure of putative phosphomannomutase from2 thermus thermophilus hb8
8c2fuvB_
100.0 19 PDB header:isomerase
Chain: B: PDB Molecule:phosphoglucomutase;
PDBTitle: phosphoglucomutase from salmonella typhimurium.
9c1c4gB_
100.0 21 PDB header:transferase
Chain: B: PDB Molecule:protein (alpha-d-glucose 1-phosphate
PDBTitle: phosphoglucomutase vanadate based transition state analog2 complex
10c2z0fA_
100.0 20 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphoglucomutase;
PDBTitle: crystal structure of putative phosphoglucomutase from thermus2 thermophilus hb8
11c1kfiA_
100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:phosphoglucomutase 1;
PDBTitle: crystal structure of the exocytosis-sensitive2 phosphoprotein, pp63/parafusin (phosphoglucomutase) from3 paramecium
12c2dkdA_
100.0 24 PDB header:isomerase
Chain: A: PDB Molecule:phosphoacetylglucosamine mutase;
PDBTitle: crystal structure of n-acetylglucosamine-phosphate mutase,2 a member of the alpha-d-phosphohexomutase superfamily, in3 the product complex
13d1p5dx1
100.0 31 Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
14d1kfia1
100.0 22 Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
15d3pmga1
100.0 24 Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
16d1p5dx3
99.9 15 Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
17d3pmga3
99.9 14 Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
18d1p5dx2
99.9 30 Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
19d1kfia3
99.9 19 Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
20d3pmga2
99.8 30 Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
21d1kfia2
not modelled 99.8 27 Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
22d1p5dx4
not modelled 99.7 25 Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
23d1wjwa_
not modelled 99.5 30 Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
24d1kfia4
not modelled 95.9 20 Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
25d3pmga4
not modelled 95.8 17 Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
26d1nn4a_
not modelled 92.8 27 Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
27c3he8A_
not modelled 91.8 23 PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
28c3s5pA_
not modelled 91.6 21 PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia
29c3k7pA_
not modelled 88.4 25 PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
30c3m1pA_
not modelled 87.7 25 PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
31d3bula2
not modelled 82.6 12 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
32d2vvpa1
not modelled 81.9 28 Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
33c4em8A_
not modelled 77.7 33 PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase b;
PDBTitle: the structure of ribose 5-phosphate isomerase b from anaplasma2 phagocytophilum
34c2yxbA_
not modelled 72.5 13 PDB header:isomerase
Chain: A: PDB Molecule:coenzyme b12-dependent mutase;
PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
35c2ppwA_
not modelled 71.4 12 PDB header:isomerase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
36d1ccwa_
not modelled 66.2 11 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
37c1k98A_
not modelled 65.9 14 PDB header:transferase
Chain: A: PDB Molecule:methionine synthase;
PDBTitle: adomet complex of meth c-terminal fragment
38c4amuB_
not modelled 65.7 16 PDB header:transferase
Chain: B: PDB Molecule:ornithine carbamoyltransferase, catabolic;
PDBTitle: structure of ornithine carbamoyltransferase from mycoplasma2 penetrans with a p321 space group
39d1dxha2
not modelled 65.0 16 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
40d1o1xa_
not modelled 64.5 21 Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
41c3nvtA_
not modelled 60.5 14 PDB header:transferase/isomerase
Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase;
PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e
42d1e5da1
not modelled 58.8 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
43c3c5yD_
not modelled 57.7 15 PDB header:isomerase
Chain: D: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
44c3hlyA_
not modelled 54.4 19 PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
45c3qd5B_
not modelled 54.3 27 PDB header:isomerase
Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase;
PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr
46d1a9xa4
not modelled 52.8 15 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
47d1xk7a1
not modelled 52.2 19 Fold:CoA-transferase family III (CaiB/BaiF)
Superfamily:CoA-transferase family III (CaiB/BaiF)
Family:CoA-transferase family III (CaiB/BaiF)
48c2i2xD_
not modelled 52.2 13 PDB header:transferase
Chain: D: PDB Molecule:methyltransferase 1;
PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri
49c3qayC_
not modelled 52.0 15 PDB header:lyase
Chain: C: PDB Molecule:endolysin;
PDBTitle: catalytic domain of cd27l endolysin targeting clostridia difficile
50c3abfB_
not modelled 52.0 12 PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242)
51d1duvg2
not modelled 50.0 11 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
52c3onoA_
not modelled 49.9 10 PDB header:isomerase
Chain: A: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus
53c3fniA_
not modelled 49.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
54c1xa3B_
not modelled 49.5 19 PDB header:transferase
Chain: B: PDB Molecule:crotonobetainyl-coa:carnitine coa-transferase;
PDBTitle: crystal structure of caib, a type iii coa transferase in2 carnitine metabolism
55d1ycga1
not modelled 49.1 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
56c1y80A_
not modelled 48.7 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted cobalamin binding protein;
PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica
57d1xrsb1
not modelled 48.2 13 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
58d1ml4a2
not modelled 46.5 22 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
59c3d64A_
not modelled 45.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 burkholderia pseudomallei
60d1bjpa_
not modelled 41.3 15 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
61c2x4kB_
not modelled 40.4 24 PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa)
62c3k6qB_
not modelled 39.1 13 PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
63c2eiuE_
not modelled 38.7 30 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:hypothetical protein aq_1627;
PDBTitle: crystal structure of a putative protein (aq1627) from aquifex aeolicus
64c2ohiB_
not modelled 38.5 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
65c1keeH_
not modelled 38.3 17 PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
66c1a4iB_
not modelled 38.2 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase /
PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase
67c1d4fD_
not modelled 37.6 16 PDB header:hydrolase
Chain: D: PDB Molecule:s-adenosylhomocysteine hydrolase;
PDBTitle: crystal structure of recombinant rat-liver d244e mutant s-2 adenosylhomocysteine hydrolase
68d1fmfa_
not modelled 36.8 18 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
69c2ormA_
not modelled 36.4 18 PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase hp0924;
PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori.
70d1otfa_
not modelled 36.4 21 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
71d1b26a1
not modelled 35.4 10 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
72c1v8bA_
not modelled 35.4 24 PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of a hydrolase
73c2g04B_
not modelled 34.3 19 PDB header:isomerase
Chain: B: PDB Molecule:probable fatty-acid-coa racemase far;
PDBTitle: crystal structure of fatty acid-coa racemase from mycobacterium2 tuberculosis h37rv
74c1ortD_
not modelled 33.6 16 PDB header:transferase
Chain: D: PDB Molecule:ornithine transcarbamoylase;
PDBTitle: ornithine transcarbamoylase from pseudomonas aeruginosa
75d1k1ga_
not modelled 33.4 24 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
76c3ry0A_
not modelled 33.3 18 PDB header:isomerase
Chain: A: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway
77c3mb2G_
not modelled 32.7 18 PDB header:isomerase
Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
78c3qqzA_
not modelled 32.1 5 PDB header:metal binding protein
Chain: A: PDB Molecule:putative uncharacterized protein yjik;
PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073
79c1bmtB_
not modelled 31.5 11 PDB header:methyltransferase
Chain: B: PDB Molecule:methionine synthase;
PDBTitle: how a protein binds b12: a 3.o angstrom x-ray structure of2 the b12-binding domains of methionine synthase
80c3ezxA_
not modelled 31.5 11 PDB header:transferase
Chain: A: PDB Molecule:monomethylamine corrinoid protein 1;
PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein
81d7reqa2
not modelled 31.4 17 Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
82d1x74a1
not modelled 31.1 30 Fold:CoA-transferase family III (CaiB/BaiF)
Superfamily:CoA-transferase family III (CaiB/BaiF)
Family:CoA-transferase family III (CaiB/BaiF)
83d2bl5a1
not modelled 30.9 24 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
84c2op8A_
not modelled 30.8 29 PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase ywhb;
PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
85c3n58D_
not modelled 29.1 21 PDB header:hydrolase
Chain: D: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from brucella2 melitensis in ternary complex with nad and adenosine, orthorhombic3 form
86d1b1ca_
not modelled 28.9 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
87c3sz8D_
not modelled 28.8 9 PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei
88c1xrsB_
not modelled 28.5 13 PDB header:isomerase
Chain: B: PDB Molecule:d-lysine 5,6-aminomutase beta subunit;
PDBTitle: crystal structure of lysine 5,6-aminomutase in complex with plp,2 cobalamin, and 5'-deoxyadenosine
89c3nolA_
not modelled 28.0 24 PDB header:transferase
Chain: A: PDB Molecule:glutamine cyclotransferase;
PDBTitle: crystal structure of zymomonas mobilis glutaminyl cyclase (trigonal2 form)
90c1luaA_
not modelled 27.3 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:methylene tetrahydromethanopterin dehydrogenase;
PDBTitle: structure of methylene-tetrahydromethanopterin dehydrogenase from2 methylobacterium extorquens am1 complexed with nadp
91c3m20A_
not modelled 26.7 18 PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
92c3a9gA_
not modelled 26.5 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of pqq-dependent sugar dehydrogenase apo-form
93c2pfsA_
not modelled 24.8 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:universal stress protein;
PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea
94d1ekxa2
not modelled 24.7 16 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
95c2zkiH_
not modelled 24.6 22 PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
96c3ntaA_
not modelled 24.2 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide
PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase
97c3eglC_
not modelled 23.5 14 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:degv family protein;
PDBTitle: crystal structure of degv family protein cg2579 from corynebacterium2 glutamicum
98c3icrA_
not modelled 23.3 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:coenzyme a-disulfide reductase;
PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd
99c3ne8A_
not modelled 22.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase;
PDBTitle: the crystal structure of a domain from n-acetylmuramoyl-l-alanine2 amidase of bartonella henselae str. houston-1
100c4ed9A_
not modelled 22.3 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:caib/baif family protein;
PDBTitle: crystal structure of a caib/baif family protein from brucella suis
101c2yh5A_
not modelled 21.7 9 PDB header:lipid binding protein
Chain: A: PDB Molecule:dapx protein;
PDBTitle: structure of the c-terminal domain of bamc
102d1vlva2
not modelled 21.0 21 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
103c1vlvA_
not modelled 21.0 20 PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase (tm1097) from2 thermotoga maritima at 2.25 a resolution
104d1t6t1_
not modelled 20.9 26 Fold:Toprim domain
Superfamily:Toprim domain
Family:Toprim domain
105d2vjma1
not modelled 20.9 22 Fold:CoA-transferase family III (CaiB/BaiF)
Superfamily:CoA-transferase family III (CaiB/BaiF)
Family:CoA-transferase family III (CaiB/BaiF)
106d1d9ea_
not modelled 20.6 5 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I DAHP synthetase

Binding site prediction 

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