Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ8K2K6
DateTue Jul 30 13:20:48 BST 2013
Unique Job ID5f366f01e2ecce98
SequenceMAASAKRKQE ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.678 Y:51.706 Z:37.402
Model (left) based on template c2d9lA_
Top template information
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip
Confidence and coverage
Confidence:100.0% Coverage: 23%
128 residues ( 23% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 80% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLN
Secondary structure 
SS confidence 
Disorder  ?????
????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEK
Secondary structure 
SS confidence 
Disorder  ?
???????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  YEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGESAPALHLNKGTPSQ
Secondary structure 
SS confidence 
Disorder 
????
?????????????????????????????????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  SPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHAAQNSANADF
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  ANFDAFGQSSGSSNFGGFPTASHSSFQPQTTGGSAGSVNANFAHFDNFPKSSSADFGTFS
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  TSQSHQTASTVSKVSTNKAGLQTADKYAALANLDNIFSAGQGGDQGSGFGTTGKAPVGSV
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  VSVPSHSSASSDKYAALAELDSVFSSAATSSNAYTPTSNASSSVFGTVPVGASAQTQPAS
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  SGPAPFGATPSTNPFVAATGPSAASSTNPFQTNARGATAATFGTASMSMPAGFGTPAQYS
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  LPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFATFGQTKPVVTPFGQVAAAGVSSNP
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........550.........560.
Sequence  FMTGAPTGQLPTGSSSTNPFL
Secondary structure 
SS confidence 
Disorder  ?????????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 80%)
Alpha helix ( 11%)
Beta strand ( 4%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2d9l chain A

3D model

Region: 12 - 139
Aligned: 128
Modelled: 128
Confidence: 100.0%
Identity: 95%
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip

Phyre2

PDB 2crr chain A

3D model

Region: 2 - 139
Aligned: 135
Modelled: 138
Confidence: 100.0%
Identity: 28%
PDB header:protein transport
Chain: A: PDB Molecule:stromal membrane-associated protein smap1b;
PDBTitle: solution structure of arfgap domain from human smap1

Phyre2

PDB 3lvr chain E

3D model

Region: 11 - 133
Aligned: 123
Modelled: 123
Confidence: 100.0%
Identity: 19%
PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium

Phyre2

PDB 2iqj chain B

3D model

Region: 11 - 129
Aligned: 116
Modelled: 119
Confidence: 100.0%
Identity: 28%
PDB header:protein transport
Chain: B: PDB Molecule:stromal membrane-associated protein 1-like;
PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like

Phyre2

PDB 3feh chain A

3D model

Region: 8 - 133
Aligned: 125
Modelled: 126
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase activator
Chain: A: PDB Molecule:centaurin-alpha-1;
PDBTitle: crystal structure of full length centaurin alpha-1

Phyre2

PDB 1dcq chain A domain 2

3D model

Region: 13 - 130
Aligned: 118
Modelled: 118
Confidence: 100.0%
Identity: 21%
Fold: ArfGap/RecO-like zinc finger
Superfamily: ArfGap/RecO-like zinc finger
Family: Pyk2-associated protein beta ARF-GAP domain

Phyre2

PDB 3jue chain A

3D model

Region: 16 - 133
Aligned: 118
Modelled: 118
Confidence: 100.0%
Identity: 19%
PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1

Phyre2

PDB 3t9k chain A

3D model

Region: 15 - 138
Aligned: 124
Modelled: 124
Confidence: 100.0%
Identity: 19%
PDB header:protein transport
Chain: A: PDB Molecule:arf-gap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of acap1 c-portion mutant s554d fused with integrin2 beta1 peptide

Phyre2

PDB 1dcq chain A

3D model

Region: 13 - 133
Aligned: 121
Modelled: 121
Confidence: 100.0%
Identity: 19%
PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.

Phyre2

PDB 2b0o chain F

3D model

Region: 14 - 132
Aligned: 119
Modelled: 119
Confidence: 100.0%
Identity: 19%
PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain

Phyre2

PDB 2crw chain A

3D model

Region: 2 - 135
Aligned: 134
Modelled: 134
Confidence: 100.0%
Identity: 20%
PDB header:signaling protein
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating
PDBTitle: solution structure of the arfgap domain of adp-ribosylation2 factor gtpaseactivating protein 3 (arfgap 3)

Phyre2

PDB 2owa chain B

3D model

Region: 10 - 124
Aligned: 111
Modelled: 115
Confidence: 100.0%
Identity: 21%
PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)

Phyre2

PDB 2p57 chain A

3D model

Region: 11 - 124
Aligned: 112
Modelled: 114
Confidence: 100.0%
Identity: 20%
PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein

Phyre2

PDB 3o47 chain A

3D model

Region: 12 - 153
Aligned: 142
Modelled: 142
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein

Phyre2

PDB 3dwd chain B

3D model

Region: 11 - 124
Aligned: 110
Modelled: 114
Confidence: 100.0%
Identity: 23%
PDB header:transport protein
Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1;
PDBTitle: crystal structure of the arfgap domain of human arfgap1

Phyre2

PDB 1u5k chain A domain 2

3D model

Region: 13 - 123
Aligned: 88
Modelled: 96
Confidence: 96.1%
Identity: 18%
Fold: ArfGap/RecO-like zinc finger
Superfamily: ArfGap/RecO-like zinc finger
Family: RecO C-terminal domain-like

Phyre2

PDB 1u5k chain A

3D model

Region: 13 - 123
Aligned: 88
Modelled: 96
Confidence: 95.8%
Identity: 16%
PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco

Phyre2

PDB 3bji chain A

3D model

Region: 4 - 60
Aligned: 57
Modelled: 57
Confidence: 92.8%
Identity: 19%
PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1

Phyre2

PDB 1y1y chain S

3D model

Region: 1 - 57
Aligned: 57
Modelled: 57
Confidence: 67.8%
Identity: 16%
PDB header:transferase/transcription/dna-rna hybrid
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis-dna/rna complex

Phyre2

PDB 1y0j chain A domain 1

3D model

Region: 25 - 62
Aligned: 38
Modelled: 38
Confidence: 61.4%
Identity: 18%
Fold: Glucocorticoid receptor-like (DNA-binding domain)
Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
Family: Erythroid transcription factor GATA-1

Phyre2
1
c2d9lA_
2
c2crrA_
3
c3lvrE_
4
c2iqjB_
5
c3fehA_
6
d1dcqa2
7
c3jueA_
8
c3t9kA_
9
c1dcqA_
10
c2b0oF_
11
c2crwA_
12
c2owaB_
13
c2p57A_
14
c3o47A_
15
c3dwdB_
16
d1u5ka2
17
c1u5kA_
18
c3bjiA_
19
c1y1yS_
20
d1y0ja1
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
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41
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47
48
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140



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2d9lA_
100.0 95 PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip
2c2crrA_
100.0 28 PDB header:protein transport
Chain: A: PDB Molecule:stromal membrane-associated protein smap1b;
PDBTitle: solution structure of arfgap domain from human smap1
3c3lvrE_
100.0 19 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
4c2iqjB_
100.0 28 PDB header:protein transport
Chain: B: PDB Molecule:stromal membrane-associated protein 1-like;
PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like
5c3fehA_
100.0 24 PDB header:hydrolase activator
Chain: A: PDB Molecule:centaurin-alpha-1;
PDBTitle: crystal structure of full length centaurin alpha-1
6d1dcqa2
100.0 21 Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:Pyk2-associated protein beta ARF-GAP domain
7c3jueA_
100.0 19 PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1
8c3t9kA_
100.0 19 PDB header:protein transport
Chain: A: PDB Molecule:arf-gap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of acap1 c-portion mutant s554d fused with integrin2 beta1 peptide
9c1dcqA_
100.0 19 PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.
10c2b0oF_
100.0 19 PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain
11c2crwA_
100.0 20 PDB header:signaling protein
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating
PDBTitle: solution structure of the arfgap domain of adp-ribosylation2 factor gtpaseactivating protein 3 (arfgap 3)
12c2owaB_
100.0 21 PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)
13c2p57A_
100.0 20 PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein
14c3o47A_
100.0 21 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
15c3dwdB_
100.0 23 PDB header:transport protein
Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1;
PDBTitle: crystal structure of the arfgap domain of human arfgap1
16d1u5ka2
96.1 18 Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:RecO C-terminal domain-like
17c1u5kA_
95.8 16 PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco
18c3bjiA_
92.8 19 PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1
19c1y1yS_
67.8 16 PDB header:transferase/transcription/dna-rna hybrid
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis-dna/rna complex
20d1y0ja1
61.4 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
21c3a1bA_
not modelled 59.3 14 PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a, histone h3.1;
PDBTitle: crystal structure of the dnmt3a add domain in complex with histone h3
22c2zetD_
not modelled 56.2 26 PDB header:signaling protein
Chain: D: PDB Molecule:melanophilin;
PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin
23d1pjua1
not modelled 56.2 44 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
24c3o3zB_
not modelled 55.9 36 PDB header:viral protein
Chain: B: PDB Molecule:chimeric alpha/beta peptide based on gp41 chr domain
PDBTitle: complex of a chimeric alpha/beta-peptide based on the gp41 chr domain2 bound to a gp41 nhr domain peptide
25c1kxuA_
not modelled 54.6 16 PDB header:regulatory protein
Chain: A: PDB Molecule:cyclin h;
PDBTitle: cyclin h, a positive regulatory subunit of cdk activating kinase
26d2bkra1
not modelled 54.4 9 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
27c1d4uA_
not modelled 54.1 20 PDB header:dna binding protein
Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd);
PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies
28c3h00A_
not modelled 54.1 24 PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: structure of the c-terminal domain of a putative hiv-1 gp41 fusion2 intermediate
29d2crga1
not modelled 52.8 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
30c2egmA_
not modelled 51.8 19 PDB header:transcription/metal binding protein
Chain: A: PDB Molecule:tripartite motif-containing protein 41;
PDBTitle: solution structure of the zf-b_box domain from human2 tripartite motif protein 41
31c3f4yF_
not modelled 51.8 36 PDB header:viral protein
Chain: F: PDB Molecule:mutant peptide derived from hiv gp41 chr domain;
PDBTitle: hiv gp41 six-helix bundle containing a mutant chr alpha-2 peptide sequence
32c2yusA_
not modelled 51.7 16 PDB header:transcription
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-
PDBTitle: solution structure of the sant domain of human swi/snf-2 related matrix-associated actin-dependent regulator of3 chromatin subfamily c member 1
33c2i50A_
not modelled 51.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 16;
PDBTitle: solution structure of ubp-m znf-ubp domain
34c3ihpB_
not modelled 51.3 30 PDB header:hydrolase
Chain: B: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: covalent ubiquitin-usp5 complex
35d1cjya2
not modelled 50.9 19 Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:Lysophospholipase
36c2junA_
not modelled 50.7 20 PDB header:ligase
Chain: A: PDB Molecule:midline-1;
PDBTitle: structure of the mid1 tandem b-boxes reveals an interaction2 reminiscent of intermolecular ring heterodimers
37c2kdxA_
not modelled 50.2 21 PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
38d2br2b2
not modelled 48.7 18 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
39d2je6b2
not modelled 47.8 19 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
40c4a5bA_
not modelled 47.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside-triphosphatase 2;
PDBTitle: crystal structure of the c258s/c268s variant of toxoplasma gondii2 nucleoside triphosphate diphosphohydrolase 1 (ntpdase1)
41d2djaa1
not modelled 46.9 23 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
42c2hr5B_
not modelled 46.9 13 PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
43d5gata_
not modelled 46.1 23 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
44c1pqvS_
not modelled 45.3 16 PDB header:transferase/transcription
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis complex
45d2dq5a1
not modelled 45.2 23 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
46d2ba0d2
not modelled 44.9 14 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
47c2d8uA_
not modelled 44.3 15 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin ligase trim63;
PDBTitle: solution structure of the b-box domain of the human2 tripartite motif-containing 63 protein
48d2vuti1
not modelled 43.7 26 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
49d1zbdb_
not modelled 43.3 18 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
50d1fyba1
not modelled 43.0 43 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
51c3auoB_
not modelled 42.9 10 PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
52d1gnfa_
not modelled 42.3 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
53d1unld_
not modelled 42.0 31 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
54d1ce3a_
not modelled 41.9 38 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
55c3c65A_
not modelled 41.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5'2 endonuclease domain
56c3w2zA_
not modelled 41.4 17 PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cyanobacterial protein
57c1unhD_
not modelled 41.3 31 PDB header:cell cycle
Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1;
PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin.
58c2kgoA_
not modelled 41.3 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ybii;
PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402
59c2yumA_
not modelled 41.2 15 PDB header:transcription
Chain: A: PDB Molecule:zinc finger zz-type-containing protein 3;
PDBTitle: solution structure of the myb-like dna-binding domain of2 human zzz3 protein
60c3agrB_
not modelled 40.4 13 PDB header:hydrolase
Chain: B: PDB Molecule:nucleoside triphosphate hydrolase;
PDBTitle: crystal structure of nucleoside triphosphate hydrolases from neospora2 caninum
61c2p3xA_
not modelled 40.4 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:polyphenol oxidase, chloroplast;
PDBTitle: crystal structure of grenache (vitis vinifera) polyphenol2 oxidase
62c1yuzB_
not modelled 37.8 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
63c2eqrA_
not modelled 37.7 20 PDB header:transcription
Chain: A: PDB Molecule:nuclear receptor corepressor 1;
PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1
64d1tiha_
not modelled 37.6 43 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
65d2k2na1
not modelled 37.3 20 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
66c1qh2B_
not modelled 35.4 41 PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:protein (trypsin inhibitor c2);
PDBTitle: chymotrypsin inhibitor (c2) from nicotiana alata
67c4dzuB_
not modelled 35.4 27 PDB header:de novo protein
Chain: B: PDB Molecule:3-alpha;
PDBTitle: complex of 3-alpha bound to gp41-5
68c3a44D_
not modelled 35.2 19 PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
69c3pihA_
not modelled 34.9 15 PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein a;
PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
70d2g45a1
not modelled 34.8 42 Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
71c1tjlD_
not modelled 34.7 11 PDB header:transcription
Chain: D: PDB Molecule:dnak suppressor protein;
PDBTitle: crystal structure of transcription factor dksa from e. coli
72c2w9mB_
not modelled 34.7 7 PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
73c2yrgA_
not modelled 33.5 21 PDB header:ligase
Chain: A: PDB Molecule:tripartite motif-containing protein 5;
PDBTitle: solution structure of the b-box domain from tripartite2 motif-containing protein 5
74d3gata_
not modelled 33.5 16 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
75c3h01A_
not modelled 33.5 24 PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: structure of the c-terminal domain of a putative hiv-1 gp41 fusion2 intermediate
76d1pfta_
not modelled 33.2 21 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
77c3j39p_
not modelled 33.2 17 PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
78d1v6za2
not modelled 32.0 9 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
79c2difA_
not modelled 31.8 23 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 39;
PDBTitle: one sequence two fold ? : miss fold of the zf-b-box domain2 from human tripartite motif protein 39
80c2gb5B_
not modelled 31.6 16 PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
81c3j20P_
not modelled 31.6 35 PDB header:ribosome
Chain: P: PDB Molecule:30s ribosomal protein s14p type z;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
82c1fybA_
not modelled 31.6 43 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:proteinase inhibitor;
PDBTitle: solution structure of c1-t1, a two-domain proteinase2 inhibitor derived from the circular precursor protein na-3 propi from nicotiana alata
83c3o5aB_
not modelled 31.3 36 PDB header:oxidoreductase
Chain: B: PDB Molecule:diheme cytochrome c napb;
PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids
84c3ky9B_
not modelled 30.6 13 PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
85d2cora1
not modelled 30.0 17 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
86d1dl6a_
not modelled 29.6 17 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
87c1oahA_
not modelled 29.6 17 PDB header:reductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa).
88d1oaha_
not modelled 29.6 17 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Di-heme elbow motif
89c2qa4Z_
not modelled 29.2 13 PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
90c1l4aE_
not modelled 29.2 21 PDB header:endocytosis/exocytosis
Chain: E: PDB Molecule:synaphin a;
PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei
91d1jkwa1
not modelled 29.2 14 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
92d1oyvi_
not modelled 28.9 41 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
93d1hcqa_
not modelled 28.9 22 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
94d1vqoz1
not modelled 28.8 14 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
95c3k1fM_
not modelled 28.7 28 PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of rna polymerase ii in complex with tfiib
96d1jj2y_
not modelled 28.3 17 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
97c3f29A_
not modelled 28.1 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:eight-heme nitrite reductase;
PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite
98c3zg6A_
not modelled 27.9 20 PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:nad-dependent protein deacetylase sirtuin-6;
PDBTitle: the novel de-long chain fatty acid function of human sirt6
99c4bkxA_
not modelled 27.8 12 PDB header:transcription
Chain: A: PDB Molecule:metastasis-associated protein mta1;
PDBTitle: the structure of hdac1 in complex with the dimeric elm2-sant domain2 of mta1 from the nurd complex
100c3k7aM_
not modelled 27.7 32 PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
101c3izrm_
not modelled 27.6 17 PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l23 (l14p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
102c1yshD_
not modelled 27.6 16 PDB header:structural protein/rna
Chain: D: PDB Molecule:ribosomal protein l37a;
PDBTitle: localization and dynamic behavior of ribosomal protein l30e
103d2dida1
not modelled 27.4 19 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
104d1gefa_
not modelled 27.4 6 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Hjc-like
105d2d8ua1
not modelled 27.3 18 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
106d1wkqa_
not modelled 27.2 12 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
107c1favC_
not modelled 27.2 27 PDB header:viral protein
Chain: C: PDB Molecule:protein (transmembrane glycoprotein);
PDBTitle: the structure of an hiv-1 specific cell entry inhibitor in complex2 with the hiv-1 gp41 trimeric core
108c3eeaB_
not modelled 27.2 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:gaf domain/hd domain protein;
PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens
109c2zkrz_
not modelled 27.1 19 PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
110c2lb5A_
not modelled 26.4 20 PDB header:transferase
Chain: A: PDB Molecule:sensor histidine kinase;
PDBTitle: refined structural basis for the photoconversion of a phytochrome to2 the activated far-red light-absorbing form
111c2kq9A_
not modelled 26.4 6 PDB header:transcription
Chain: A: PDB Molecule:dnak suppressor protein;
PDBTitle: solution structure of dnak suppressor protein from agrobacterium2 tumefaciens c58. northeast structural genomics consortium target3 att12/ontario center for structural proteomics target atc0888
112d1ffkw_
not modelled 26.0 16 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
113c3s5bB_
not modelled 26.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:endonuclease g;
PDBTitle: crystal structure of ced-3 protease suppressor-6 (cps-6) from2 caenorhabditis elegans
114c3j21i_
not modelled 25.9 14 PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
115d2dipa1
not modelled 25.5 22 Fold:RING/U-box
Superfamily:RING/U-box
Family:ZZ domain
116d1p6oa_
not modelled 25.0 24 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
117c3zey8_
not modelled 24.8 26 PDB header:ribosome
Chain: 8: PDB Molecule:ribosomal protein s29, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
118c4a17Y_
not modelled 24.8 17 PDB header:ribosome
Chain: Y: PDB Molecule:rpl37a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
119d1b8ta2
not modelled 24.7 22 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
120d1euva_
not modelled 24.6 16 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like

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