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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c1d4uA_ | PDB header: dna binding protein | Chain: A: PDB Molecule: nucleotide excision repair protein xpa (xpa-mbd); | PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies |
Added to library: Tue Mar 16 12:19:43 2010 | |
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Links to external resources | |
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Sequence | M | E | F | D | Y | V | I | C | E | E | C | G | K | E | F | M | D | S | Y | L | M | D | H | F | D | L | P | T | C | D | D | C | R | D | A | D | D | K | H | K | L | I | T | K | T | E | A | K | Q | E | Y | L | L | K | D | C | D | L | E | K | R | E | P | P | L | K | F | I | V | K |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | T | T | T | ![]() | ![]() | S | S | S | S | T | T | T | T | S | T | T | T | S | S | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | T | T | T | S | S | S | T | T | T | S | S | ![]() | ![]() | ![]() | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
Sequence | K | N | P | H | H | S | Q | W | G | D | M | K | L | Y | L | K | L | Q | I | V | K | R | S | L | E | V | W | G | S | Q | E | A | L | E | E | A | K | E | V | R | Q | |||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() |
Download: | PDB structure | FASTA sequence |
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