HHsearch 1.5 NAME c1d4uA_ FAM FILE c1d4uA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c1d4uA_.a3m DATE Fri Mar 12 16:03:51 2010 LENG 111 match states, 111 columns in multiple alignment FILT 59 out of 63 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.4122 -0.5555 SEQ >ss_dssp CCCCCEECTTTCCEESCSSSTTTTSCCCCTTTCSSSSSCCCEEHHHHTTTTTCCSSSTTTSCCSCCEEESSCSSSCCCSCCEEECHHHHHHHHHHHTSSH HHHHHHHHHCC >sa_dssp EEEEEDEAEDEDDEDDDCDACDEBEBBAADDCEDCEEDBDCBCCEDABEDBCBEDECBEEEECDBDDCEEEBEEEDEEEECDBBACBBACEBADDDDDDD ECBDDBEEEEE >ss_pred CCCHHHHHHHCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCH HHHHHHHHHCC >ss_conf 9720478874188110057998737100555569802010114889988857994574021000010016789888764401216779999999981999 99999997349 >Consensus xxxdxxxCxxCxxxxxdxxlxxxfxxxvCxxCkxxxxkxxlITkTxakxeYlLxdxdLxxxexxLxxixkxNPhxxxxxxMkLYlrxqVeexAxxxwGsx ExLxxexxxRe >c1d4uA_ MEFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQ EALEEAKEVRQ >UniRef50_P28519(189-295:371) DNA repair protein RAD14 n=6 Tax=Saccharomycetaceae RepID=RAD14_YEAST E=2e-34 s/c=1.36 id=34% cov=94% -------CIECHiNIEMDPVLHDVFKLQVCKQCsKEHPEKYALLTKTECKEDYFLTDPELND-EDLFHRLEKPNPHSGTFARMQLFVRCEVEAFAFKKWG GEEGLDEEWQRRE >UniRef50_A8IAI2(14-91:91) Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8IAI2_CHLRE E=7e-12 s/c=0.92 id=34% cov=71% --------EHCGSLSFSQDWFQAFGVVICSQCKRDE---PLISKANALSRYCLTAKDLQD----LGFVTKDNPQKKGWSAMKLYLRSQVEQRA------- ----------- >UniRef50_C1EF71(238-324:327) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EF71_9CHLO E=1e-10 s/c=0.77 id=31% cov=75% ------------------------RVRLCKSCSElyaykPRGRMRLVTFTRCKDDWCLRPKDLEG----LPYGLDTNPENASWAPMKLYRRVDVVERALA RWKSRARLEAELKRR- >UniRef50_Q4RTG8(19-84:419) Chromosome 1 SCAF14998, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RTG8_TETNG E=1e-12 s/c=1.12 id=34% cov=60% ----------------------------------------FITAVRAMNEFCLKPSDLEQ----LRRIRRRSPHDDTEA-FTVFLRSDVEAKAIDVWGSQ EALARERNLRK >UniRef50_B0WHG5(318-379:386) Serine protease inhibitor, serpin n=1 Tax=Culex quinquefasciatus RepID=B0WHG5_CULQU E=5e-12 s/c=1.17 id=35% cov=56% -QMDFAECLKYLDKLVDSWVMVTFELEFSNVCRNNDGKHSLVMRPDSKQECLLKGFDLDSRK-------------------------------------- ----------- >UniRef50_B0D362(43-119:370) Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D362_LACBS E=1e-10 s/c=0.88 id=28% cov=61% -----------------------------------------INKTRARKEYKLSDKDI--RDLPYVRVEDENFHGGNYrKPMMLYQERDIELTAWRKYGG PVGFQAHLQER- >UniRef50_B3KZ50(239-339:423) DNA repair protein, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3KZ50_PLAKH E=5e-16 s/c=0.85 id=29% cov=90% -------CFLCNKKKKLNKPLCAVNIYICYDCKVQDSNFKMISLSKLVRKYCLNNYDLSKYEKQLALLCTKNPRGYS-KQMKLYFVFQIKEIAIRKHGSM EKVKEMY---- >UniRef50_Q5CQI1(6-109:199) RAD14/XpA, DNA excision repair protein (Fragment) n=2 Tax=Cryptosporidium RepID=Q5CQI1_CRYPV E=1e-10 s/c=0.65 id=30% cov=71% --------------------LKSVGIYVCRRCffQGKDDEYSKMTQTNAMKDYALSAQDLSGEGFA---IVKKPTSYGKNRFMKLYYKFQVEEAAIKKYG SVE---------- >UniRef50_Q0V4S7(103-179:308) Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0V4S7_PHANO E=9e-08 s/c=0.75 id=28% cov=68% ---------------------------------EEPDKEISITQTDAGKKYGLKKEELS----VVKHFEKRNPNPLYKNDIKLFVESEVKELGWRKLGml vGEEGEDAVKKGRE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 2493 * 2507 1329 * * * * * * 2010 * * 1 0 * * * * * * 2193 0 0 E 2 * * * 1155 * * * * * * * * 2435 1451 * * * * * * 2 0 * * * * * * 2622 0 0 F 3 * * 2400 * 1969 * * * * * 2076 * 2911 * * 2435 * * * * 3 0 * * * * * * 2622 0 0 D 4 * * 249 2657 * * * * * * * * * * * * * * * * 4 0 * * * * * * 2709 0 0 Y 5 * * * * 2308 * 2897 * * 3006 * * * * 2751 * * * * 1356 5 0 * * * * * * 2801 0 0 V 6 2559 * * 1926 * * * * * 2604 * * 3039 * * 3221 3356 3718 * * 6 0 * * * * * * 3177 0 0 I 7 * * * 1984 * * * 1314 * 3873 * 3793 * * * * 4095 2774 * * 7 0 * * * * * * 3172 0 0 C 8 * 0 * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 3806 0 0 E 9 5458 * 4156 2446 2378 5572 * 3136 4834 2968 5252 5670 * 5737 2840 * * 4532 * * 9 0 * * * * * * 3857 0 0 E 10 * * 3864 1078 * * 4799 * 3053 2636 5311 4619 * * * 4670 * * * 4834 10 0 * * * * * * 3857 0 0 C 11 * 59 * * * * * * * * * * * * * * * * * 4635 11 0 * * * * * * 3857 0 0 G 12 * * 3733 5293 * 1413 3083 * 5458 3731 * 2520 * 3429 * 5648 5595 * * * 12 172 3153 * 1645 556 * * 3857 1909 0 K 13 5415 * 4069 4540 * * 5309 * 1596 * * 3281 * 3688 * 1747 4658 * * * 13 84 4151 * 1000 1000 * * 3857 1000 0 E 14 4584 * 5311 2929 5458 4983 * 3097 1980 2333 4688 5252 3843 * * * 5364 5670 * * 14 0 * * * * * * 3857 0 0 F 15 * * 4032 2176 1744 * * 4393 2536 3798 * * 4834 * * 4799 * * * 4151 15 0 * * * * * * 3857 0 0 M 16 4582 * * 5096 4799 4280 * 2684 2925 2166 3032 * 4103 * * 4353 4555 4066 * * 16 26 5834 * 0 * * * 3857 1000 0 D 17 * * 855 2857 * * * 5309 * 3593 * 4171 * * * 4799 5481 4008 * 5311 17 51 4850 * 0 * * * 3857 1000 0 S 18 4666 * 4834 5311 5792 * 5834 * * * * 2925 3851 2869 4151 1348 5724 * 4716 5584 18 0 * * * * * * 3857 0 0 Y 19 5737 * 4799 3842 2895 * * * 2524 5364 * 5684 4549 3933 * * 4051 3372 3407 2607 19 0 * * * * * * 3857 0 0 L 20 * * * * 3534 * * * * 817 5415 * 4033 * * * 3825 4635 3442 4096 20 0 * * * * * * 3857 0 0 M 21 3823 * * 4310 3191 * 4488 * 4255 1719 3069 * * 4584 5138 5176 * 4649 3526 5317 21 0 * * * * * * 3957 0 0 D 22 * 3445 2506 2846 * * * * 2360 5893 * 4367 * 4238 4597 3668 3509 3791 * * 22 0 * * * * * * 3957 0 0 H 23 3220 * * * * * 2616 4668 * * * 2573 * * 4989 3521 2584 2078 * * 23 51 * 4850 * * * * 3957 0 0 F 24 * * * * 429 * * 3850 * 5876 * * * * * * * 3130 * 4150 24 0 * * * * 0 * 3916 0 1000 D 25 5685 * 2785 3474 * 1815 5779 * 3104 5524 * 2474 * * 3757 4292 * * * * 25 0 * * * * * * 4034 0 0 L 26 * 2700 * * * * 3530 1909 * 2213 * * * * * * * 2357 5671 3995 26 0 * * * * * * 4034 0 0 P 27 3896 4530 5181 4125 * 4289 * * 4433 4160 * 5497 3302 4549 2445 4305 * 3871 * 2455 27 0 * * * * * * 4034 0 0 T 28 4193 5524 * * 4722 * * 2953 * 3824 * * * * * * 4796 622 * * 28 0 * * * * * * 4034 0 0 C 29 * 56 * * * * * * * * * * * * * 4722 * * * * 29 0 * * * * * * 4034 0 0 D 30 * * 1788 * * 5868 4247 * 2751 * * 3160 * * 2506 3964 * 4292 * 3491 30 0 * * * * * * 4034 0 0 D 31 2979 * 3247 5008 * 5497 * 5743 2377 * 4944 3124 * 4267 3487 2831 5779 4149 * * 31 0 * * * * * * 4034 0 0 C 32 * 0 * * * * * * * * * * * * * * * * * * 32 317 2341 * 500 1771 * * 4034 2306 0 R 33 4944 * * * * * * * 1047 * * * * 3992 1391 4661 * * * * 33 51 4849 * 0 * * * 4034 1122 0 D 34 3917 * 1724 1815 * 4501 5030 * 4685 * * 3871 * 4379 5034 4931 * 4225 * * 34 223 2804 * 1746 511 * * 4103 2242 0 A 35 4835 * 4065 4739 * * 3483 5633 1726 3953 * 3699 3505 5247 3981 5030 3237 * * * 35 291 2962 4195 264 2578 * * 4103 2005 0 D 36 4048 * 1355 3053 * * * * 3565 * * * 1727 * 4588 * * * * * 36 83 * 4167 * * 930 1073 4139 0 1561 D 37 * * 2140 1505 * 1907 * * * * * 4004 * * * 3444 * * * * 37 36 * 5347 * * 530 1701 4002 0 1948 K 38 4399 * 4958 3321 * * 5472 4498 975 * 4996 3105 * * 3360 * * * * * 38 0 * * * * 900 1107 4113 0 1448 H 39 * * * 4810 2441 * 1987 * * 5053 4692 4069 * * * * * * * 1323 39 0 * * * * 0 * 4121 0 1000 K 40 3711 * 5512 4434 * * * 4812 2104 * * 4742 5077 * 2902 1453 5562 * * * 40 0 * * * * * * 4240 0 0 L 41 * * * * 2690 * * * 3741 736 3214 * * * * 4542 * 5695 * * 41 0 * * * * * * 4064 0 0 I 42 * * * * * * * 917 * 1869 4009 * * * * * * 2895 * * 42 0 * * * * * * 4281 0 0 T 43 4384 * * * * * * * * * 5735 4660 * * * 2435 496 * * * 43 0 * * * * * * 4281 0 0 K 44 3401 * * * 5238 5937 * * 1086 3430 5574 * 4723 2845 3315 * * * * * 44 0 * * * * * * 4286 0 0 T 45 4479 * * * * 4523 * * * * * 5648 5735 * * 3261 551 3536 * * 45 0 * * * * * * 4286 0 0 E 46 * * 3428 1381 * * * * 3430 * * 3588 * * 1849 4830 4857 * * * 46 0 * * * * * * 4286 0 0 A 47 626 2573 * * * * * * * 3430 * * * * * 4915 * 4110 * * 47 0 * * * * * * 4286 0 0 K 48 * * * * * 4864 * 2713 1208 4482 3174 * * 4808 3174 4857 * 4516 * * 48 0 * * * * * * 4286 0 0 Q 49 3558 * 4702 2319 * * * * 2254 6442 * 3017 * 3243 2946 3379 * * * * 49 0 * * * * * * 4286 0 0 E 50 * * 1478 1481 * * * * 2626 * * * * * 4813 5333 4050 * * * 50 0 * * * * * * 4286 0 0 Y 51 * 5735 * * 2944 * * * * * * * * * * * * * 5238 278 51 0 * * * * * * 4286 0 0 L 52 3655 2208 * * 5118 4864 * * 4669 958 4722 * * * * 4348 * * * * 52 0 * * * * * * 4286 0 0 L 53 * * * * * * * 5220 * 93 * * * * * * * 4808 * * 53 0 * * * * * * 4286 0 0 K 54 * * * * * * * * 1718 * * 3162 3409 * 3543 3059 1815 * * * 54 0 * * * * * * 4286 0 0 D 55 3389 * 1147 3717 * 5735 5429 * 4864 4808 * 3703 2892 * * 5011 5489 * * * 55 17 6445 * 2807 222 * * 4286 1000 0 C 56 3371 2790 * 3715 5735 4371 * 6398 3600 * * 5220 2776 4611 * 2416 5574 4916 * 3922 56 0 * * * * * * 4286 0 0 D 57 * * 737 1849 * * 5148 * * * * * * 5648 * 4701 4808 * * * 57 0 * * * * * * 4286 0 0 L 58 * * * * 3440 * * 3675 * 270 * * * * * * * * * * 58 58 * 4669 * * * * 4286 0 0 E 59 5123 3978 2353 2208 * * * 5157 3465 * 6077 5031 * 3509 4030 2453 * * * * 59 151 * 3332 * * * 0 4206 0 1000 K 60 * * 1904 4259 * 2289 * 5630 2368 4529 5531 4923 * 4252 5070 3971 * 5786 * * 60 706 * 1370 * * 1815 482 3991 0 2391 R 61 4547 * * 3024 * 4260 3548 * * * * * 5546 3541 1118 * * 5367 * 3263 61 0 * * * * 2654 250 3733 0 3731 E 62 * * 2797 744 * 4162 * * 3703 * * * * 3596 * 5394 5648 * * * 62 483 * 1815 * * 3390 145 3748 0 3678 P 63 * * 4084 * 4012 * * * 2569 4300 * * 1171 * * 3874 2762 * * * 63 0 * * * * 999 1001 3577 0 3599 P 64 4170 * 5040 4857 * * * 5311 3067 1908 * * 2110 4083 * 4445 * 2922 * * 64 82 * 4170 * * 0 * 3811 0 3065 L 65 * 4810 * * 4413 * * 6183 * 329 5358 * * * * * * 4741 * 4454 65 0 * * * * * 0 4142 0 1000 K 66 3051 * * * * 5838 4478 * 2676 * * 4442 1885 * 2229 4177 5084 4454 * * 66 0 * * * * * 0 4142 0 1000 F 67 * 6015 * * 2223 * 1899 * 3023 3397 * * * 5621 2931 * * 5355 * 3206 67 0 * * * * 0 * 4149 0 1000 I 68 5331 * * 4716 4368 5164 * 1509 * 1589 * * * * * * 4901 3456 5399 5127 68 0 * * * * * * 4265 0 0 V 69 4582 4544 4721 1983 * * * 4755 4047 2713 * 6305 * 5975 4217 3272 4263 2873 * * 69 0 * * * * * * 4269 0 0 K 70 * * 3455 * * 6140 * * 952 * 5422 * * * 1912 * 3870 5636 * * 70 0 * * * * * * 4269 0 0 K 71 4236 * 3219 4663 * * * * 1714 * * * 2355 6201 2187 * 3908 * * * 71 0 * * * * * * 4269 0 0 N 72 * * * * * * * * * * * 313 4622 * * 2696 * * * * 72 0 * * * * * * 4269 0 0 P 73 * * * * 4663 * * * * * * * 120 * * * 4622 * * * 73 0 * * * * * * 4269 0 0 H 74 * * * 5200 5137 * 978 4359 * * * 3907 * 5964 2667 4622 * * * 3223 74 60 5789 5478 0 * * * 4269 1000 0 H 75 4949 * 3930 3434 * 2780 3712 * 2602 * * 2040 4775 5410 * 3975 * * * 4157 75 63 6122 5149 1000 1000 0 * 4227 1000 1000 S 76 3764 * 3582 4695 * 2578 * * 3472 4876 * 6092 3493 3691 4866 2327 * 5200 * 3819 76 0 * * * * 972 1029 4281 0 1534 Q 77 4715 * 5133 4656 6369 3141 5380 * 4604 * * 3188 * 6468 2857 2703 2093 * * 4152 77 236 * 2726 * * 0 * 4272 0 1000 W 78 * * * 4058 2536 * * * 4698 5863 4347 4445 * * * 5488 * * 1456 2121 78 66 4479 * 0 * 0 * 4068 1000 2433 G 79 2517 * * * * 2384 4821 * 2717 * * 3297 3611 * 3919 2347 * * * * 79 92 * 4010 * * * * 4269 0 0 D 80 4963 * 2645 3931 3980 * * * 3300 5638 * 2713 1837 3907 4584 5905 * * * * 80 0 * * * * 0 * 4200 0 1381 M 81 * * * * 4893 * * 3609 * 4158 272 * * * * * * * * * 81 0 * * * * * * 4269 0 0 K 82 * * * * * * 4808 * 917 * 2363 * * 3166 5131 * 3790 5148 * * 82 0 * * * * * * 4270 0 0 L 83 * 7081 * * * * * 5454 * 291 * * * * * * * 2715 * * 83 0 * * * * * * 4270 0 0 Y 84 * * * * 1769 * * * * * * * * * * * * * * 501 84 0 * * * * * * 4272 0 0 L 85 * 6709 * * 3453 * * * 4793 973 * * * 4668 3477 4889 * 3544 4514 4031 85 0 * * * * * * 4272 0 0 K 86 * * * 3003 * * 6154 5483 2572 2750 * * * 4753 1137 * * 5043 * * 86 14 * 6709 * * * * 4272 0 0 L 87 4358 3318 6056 4632 2598 6240 * * 4409 3242 * * * * 2882 2423 * 4280 * 3459 87 0 * * * * * 0 4273 0 1000 Q 88 * * 1972 2649 * * * * * * * * * 868 * * 4726 * * * 88 0 * * * * * 0 4273 0 1000 I 89 * * * * * * * 1866 * 4726 * * * * * * * 540 * * 89 0 * * * * * 0 4273 0 1000 V 90 5831 * * 745 * * 6150 6471 2756 * * * * 4499 4000 * * 3243 * * 90 0 * * * * * 0 4273 0 1000 K 91 2827 * 5364 1258 * * * * 2857 3888 * 6056 * 3483 4397 4822 5387 * * * 91 0 * * * * * 0 4273 0 1000 R 92 3940 * * 4726 2957 * * 3153 2478 4488 * * * * 1636 * 4659 6274 * 4121 92 0 * * * * * 0 4273 0 1000 S 93 208 5683 * * * 4902 * * * * * * * * * 4125 * 5387 * * 93 0 * * * * * 0 4273 0 1000 L 94 * * * * 3332 * * 1894 4499 2017 * * * * 3560 7469 * 3991 3038 3936 94 12 6865 * 1000 1000 * 0 4237 1000 1000 E 95 4031 * 5950 1446 * * 5841 5610 2567 * * 4792 * 4970 2111 4342 * * * * 95 72 4358 * 640 1481 * 0 4237 1400 1000 V 96 * * * * * * * 3899 1293 4758 * * * * 2634 * * 1614 * * 96 0 * * * * * 0 4237 0 1000 W 97 * * * * 4891 * 3170 * * 4821 * * * * * * * * 670 2385 97 0 * * * * * 0 4237 0 1000 G 98 * * * 4938 * 174 * * 3921 * * 6072 * * * * * * * * 98 52 4821 * 1585 585 * 0 4237 1000 1000 S 99 * * 3495 * * 2286 * * * * * 4560 * * * 694 4450 * * * 99 0 * * * * * 0 4237 0 1000 Q 100 4780 * * 1811 * * * * 3195 2198 3775 * 3036 4924 4216 * * 4499 5292 * 100 0 * * * * 0 * 4223 0 1000 E 101 4063 * 3468 519 4920 * * * 6325 * * * * 3963 * * * 4561 * * 101 0 * * * * * * 4208 0 0 A 102 1865 * 5059 3105 * 1596 * * 3093 * * 3752 * 6284 5092 6071 * * * * 102 0 * * * * * * 4096 0 0 L 103 * * * 4695 4380 * * 4238 * 368 5980 * * * * * * 3849 * * 103 0 * * * * * * 4096 0 0 E 104 4690 * 1699 1679 * * * 5690 4211 4429 * * * 2382 * * * 5095 * * 104 0 * * * * * * 4088 0 0 E 105 1657 * 3849 2284 * * * * 4421 5022 5765 4417 * 6570 2026 * 6730 * * * 105 0 * * * * * * 4088 0 0 A 106 4980 * * 505 * * 4310 * 5022 * 4211 * * 3931 * * * 3985 * * 106 0 * * * * * * 4088 0 0 K 107 * * * * 3725 * 3694 4045 1830 2817 5563 * * * 2780 * * * 3673 3080 107 0 * * * * * * 4088 0 0 E 108 3957 * 4595 1645 6522 * 5029 4855 2634 3815 * 5535 * 2222 * * 5034 * * * 108 0 * * * * * * 3797 0 0 V 109 5545 * * 4189 * 4389 * * 1363 3053 * * * 5638 1686 * * 4795 * * 109 0 * * * * * * 3797 0 0 R 110 * * * * * * * * 4290 * * * * * 76 * * * * * 110 0 * * * * * * 3805 0 0 Q 111 * * * 762 * * * * 2454 * * * * 3314 2973 * * * * * 111 0 * * 0 * * * 3523 0 0 //