PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d2bkra1

Fold library id	Fold	Superfamily	Family
d2bkra1	Cysteine proteinases	Cysteine proteinases	Adenain-like

Links to external resources
Added to library: Tue Mar 16 12:17:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D P V V L S Y M D S L L R Q S D V S L L D P P S W L N D H I I G F A F E Y F A N S Q F H D S S D H V S F I S P E V T Q F I K C T S N P A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S T T S
T T T G G G T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I A M F L E P L D L P N K R V V F L A I N D N S N Q A A G G S H W S L L V Y L Q D K N S F F H Y D S H S R S N S V H A K Q V A E K L E A F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T G G G
S
S S S S
G G G T
S S T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G R K G D K L A F V E E K A P A Q Q N S Y D C G M Y V I C N T E A L C Q N F F R Q Q T E S L L Q L L T P A Y I T K K R G E W K D L I A T L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S S S T S

.

Sequence K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	P	V	V	L	S	Y	M	D	S	L	L	R	Q	S	D	V	S	L	L	D	P	P	S	W	L	N	D	H	I	I	G	F	A	F	E	Y	F	A	N	S	Q	F	H	D	S	S	D	H	V	S	F	I	S	P	E	V	T	Q	F	I	K	C	T	S	N	P	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T										T	T	S	T	T	S																	T	T	T	G	G	G	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	A	M	F	L	E	P	L	D	L	P	N	K	R	V	V	F	L	A	I	N	D	N	S	N	Q	A	A	G	G	S	H	W	S	L	L	V	Y	L	Q	D	K	N	S	F	F	H	Y	D	S	H	S	R	S	N	S	V	H	A	K	Q	V	A	E	K	L	E	A	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G	T	G	G	G		S											S	S	S	S												G	G	G	T							S	S	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	R	K	G	D	K	L	A	F	V	E	E	K	A	P	A	Q	Q	N	S	Y	D	C	G	M	Y	V	I	C	N	T	E	A	L	C	Q	N	F	F	R	Q	Q	T	E	S	L	L	Q	L	L	T	P	A	Y	I	T	K	K	R	G	E	W	K	D	L	I	A	T	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		T	T														S	S	S	S	T																		S
	.
Sequence	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)