Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	E	N	Q	Y	Y	G	T	G	R	R	K	S	S	A	A	R	V	F	I	K	P	G	N	G	K	I	V	I	N	Q	R	S	L	E	Q	Y	F	G	R	E	T	A	R	M	V	V	R	Q	P	L	E	L	V	D	M	V	E	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	D	L	Y	I	T	V	K	G	G	G	I	S	G	Q	A	G	A	I	R	H	G	I	T	R	A	L	M	E	Y	D	E	S	L	R	S	E	L	R	K	A	G	F	V	T	R	D	A	R	Q	V	E	R	K	K	V	G	L	R	K
Secondary structure
SS confidence
Disorder																																																								?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130
Sequence		A	R	R	R	P	Q	F	S	K	R
Secondary structure
SS confidence
Disorder		?				?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gy9 chain I domain 1 Region: 5 - 130 Aligned: 126 Modelled: 126 Confidence: 100.0% Identity: 100% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: Translational machinery components Phyre2 PDB 2vqe chain I domain 1 Region: 4 - 130 Aligned: 127 Modelled: 127 Confidence: 100.0% Identity: 54% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: Translational machinery components Phyre2 PDB 3bbn chain I Region: 5 - 130 Aligned: 126 Modelled: 126 Confidence: 100.0% Identity: 46% PDB header:ribosome Chain: I: PDB Molecule:ribosomal protein s9; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 2xzm chain I Region: 2 - 130 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 25% PDB header:ribosome Chain: I: PDB Molecule:rps16e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Phyre2 PDB 2zkq chain I Region: 4 - 130 Aligned: 126 Modelled: 127 Confidence: 100.0% Identity: 33% PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1s1h chain I Region: 5 - 130 Aligned: 125 Modelled: 126 Confidence: 100.0% Identity: 36% PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s16; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Phyre2 PDB 3iz6 chain I Region: 17 - 130 Aligned: 113 Modelled: 114 Confidence: 100.0% Identity: 36% PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s16 (s9p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 1s3b chain B Region: 59 - 82 Aligned: 22 Modelled: 24 Confidence: 54.6% Identity: 50% PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase [flavin-containing] b; PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan Phyre2 PDB 1d5t chain A domain 1 Region: 56 - 82 Aligned: 25 Modelled: 27 Confidence: 50.8% Identity: 20% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: GDI-like N domain Phyre2 PDB 1v0j chain B Region: 57 - 82 Aligned: 24 Modelled: 26 Confidence: 46.8% Identity: 38% PDB header:isomerase Chain: B: PDB Molecule:udp-galactopyranose mutase; PDBTitle: udp-galactopyranose mutase from mycobacterium tuberculosis Phyre2 PDB 2rrl chain A Region: 58 - 103 Aligned: 46 Modelled: 46 Confidence: 42.5% Identity: 15% PDB header:protein transport Chain: A: PDB Molecule:flagellar hook-length control protein; PDBTitle: solution structure of the c-terminal domain of the flik Phyre2 PDB 1ltx chain R Region: 56 - 82 Aligned: 25 Modelled: 27 Confidence: 39.5% Identity: 20% PDB header:transferase/protein binding Chain: R: PDB Molecule:rab escort protein 1; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Phyre2 PDB 2hyd chain B Region: 23 - 89 Aligned: 66 Modelled: 67 Confidence: 35.6% Identity: 21% PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Phyre2 PDB 1hyu chain A domain 1 Region: 51 - 82 Aligned: 30 Modelled: 32 Confidence: 35.2% Identity: 30% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD/NAD-linked reductases, N-terminal and central domains Phyre2 PDB 3cp8 chain C Region: 59 - 82 Aligned: 22 Modelled: 24 Confidence: 33.7% Identity: 32% PDB header:oxidoreductase Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: crystal structure of gida from chlorobium tepidum Phyre2 PDB 2uzz chain D Region: 60 - 82 Aligned: 21 Modelled: 23 Confidence: 33.2% Identity: 38% PDB header:oxidoreductase Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase; PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox) Phyre2 PDB 2v6o chain A Region: 23 - 82 Aligned: 58 Modelled: 60 Confidence: 33.1% Identity: 12% PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin glutathione reductase; PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr) Phyre2 PDB 3jsk chain N Region: 42 - 85 Aligned: 42 Modelled: 44 Confidence: 32.8% Identity: 24% PDB header:biosynthetic protein Chain: N: PDB Molecule:cypbp37 protein; PDBTitle: thiazole synthase from neurospora crassa Phyre2 PDB 2bcg chain G domain 1 Region: 57 - 82 Aligned: 24 Modelled: 26 Confidence: 32.7% Identity: 21% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: GDI-like N domain Phyre2 PDB 1ges chain A domain 1 Region: 59 - 82 Aligned: 22 Modelled: 24 Confidence: 30.9% Identity: 32% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD/NAD-linked reductases, N-terminal and central domains Phyre2 1 d2gy9i1 2 d2vqei1 3 c3bbnI_ 4 c2xzmI_ 5 c2zkqi_ 6 c1s1hI_ 7 c3iz6I_ 8 c1s3bB_ 9 d1d5ta1 10 c1v0jB_ 11 c2rrlA_ 12 c1ltxR_ 13 c2hydB_ 14 d1hyua1 15 c3cp8C_ 16 c2uzzD_ 17 c2v6oA_ 18 c3jskN_ 19 d2bcgg1 20 d1gesa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2gy9i1 100.0 100 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 2 d2vqei1 100.0 54 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 3 c3bbnI_ 100.0 46 PDB header:ribosome Chain: I: PDB Molecule:ribosomal protein s9; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 4 c2xzmI_ 100.0 25 PDB header:ribosome Chain: I: PDB Molecule:rps16e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 5 c2zkqi_ 100.0 33 PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 6 c1s1hI_ 100.0 36 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s16; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 7 c3iz6I_ 100.0 36 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s16 (s9p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 8 c1s3bB_ 54.6 50 PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase [flavin-containing] b; PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan 9 d1d5ta1 50.8 20 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 10 c1v0jB_ 46.8 38 PDB header:isomerase Chain: B: PDB Molecule:udp-galactopyranose mutase; PDBTitle: udp-galactopyranose mutase from mycobacterium tuberculosis 11 c2rrlA_ 42.5 15 PDB header:protein transport Chain: A: PDB Molecule:flagellar hook-length control protein; PDBTitle: solution structure of the c-terminal domain of the flik 12 c1ltxR_ 39.5 20 PDB header:transferase/protein binding Chain: R: PDB Molecule:rab escort protein 1; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid 13 c2hydB_ 35.6 21 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 14 d1hyua1 35.2 30 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 15 c3cp8C_ 33.7 32 PDB header:oxidoreductase Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: crystal structure of gida from chlorobium tepidum 16 c2uzzD_ 33.2 38 PDB header:oxidoreductase Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase; PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox) 17 c2v6oA_ 33.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin glutathione reductase; PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr) 18 c3jskN_ 32.8 24 PDB header:biosynthetic protein Chain: N: PDB Molecule:cypbp37 protein; PDBTitle: thiazole synthase from neurospora crassa 19 d2bcgg1 32.7 21 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 20 d1gesa1 30.9 32 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 21 c3k7tB_ not modelled 30.7 45 PDB header:oxidoreductase Chain: B: PDB Molecule:6-hydroxy-l-nicotine oxidase; PDBTitle: crystal structure of apo-form 6-hydroxy-l-nicotine oxidase,2 crystal form p3121 22 d1rbla1 not modelled 30.4 25 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 23 d1wdda1 not modelled 28.9 22 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 24 c2vvlD_ not modelled 28.5 36 PDB header:oxidoreductase Chain: D: PDB Molecule:monoamine oxidase n; PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger. 25 c2yl4A_ not modelled 27.8 26 PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 26 c4a1eU_ not modelled 27.0 29 PDB header:ribosome Chain: U: PDB Molecule:rpl35; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1 27 c2zxiC_ not modelled 26.7 33 PDB header:fad-binding protein Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: structure of aquifex aeolicus gida in the form ii crystal 28 c3cgvA_ not modelled 25.7 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:geranylgeranyl reductase related protein; PDBTitle: crystal structure of geranylgeranyl bacteriochlorophyll reductase-like2 fixc homolog (np_393992.1) from thermoplasma acidophilum at 1.60 a3 resolution 29 c3rhaA_ not modelled 23.8 28 PDB header:oxidoreductase Chain: A: PDB Molecule:putrescine oxidase; PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens 30 c1ryiB_ not modelled 23.4 38 PDB header:oxidoreductase Chain: B: PDB Molecule:glycine oxidase; PDBTitle: structure of glycine oxidase with bound inhibitor glycolate 31 d1rrea_ not modelled 22.5 25 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:ATP-dependent protease Lon (La), catalytic domain 32 c3g05B_ not modelled 21.7 30 PDB header:rna binding protein Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg 33 c2olnA_ not modelled 21.6 38 PDB header:oxidoreductase Chain: A: PDB Molecule:nikd protein; PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution 34 c3m6aC_ not modelled 21.2 25 PDB header:hydrolase Chain: C: PDB Molecule:atp-dependent protease la 1; PDBTitle: crystal structure of bacillus subtilis lon c-terminal domain 35 c2w0hA_ not modelled 21.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:trypanothione reductase; PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph 36 c2qaeA_ not modelled 19.3 32 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase 37 c1dxlC_ not modelled 19.3 30 PDB header:oxidoreductase Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum 38 c3uo9B_ not modelled 17.8 29 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:glutaminase kidney isoform, mitochondrial; PDBTitle: crystal structure of human gac in complex with glutamate and bptes 39 c2nvkX_ not modelled 17.3 36 PDB header:oxidoreductase Chain: X: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of thioredoxin reductase from drosophila2 melanogaster 40 d3lada1 not modelled 17.0 35 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 41 d1dxla1 not modelled 16.9 30 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 42 d1d4ca2 not modelled 15.8 16 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 43 d2bj7a1 not modelled 15.5 21 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 44 d1reoa1 not modelled 15.4 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 45 c1f8sA_ not modelled 15.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate. 46 c3b5xB_ not modelled 15.3 31 PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae 47 c2r9zB_ not modelled 15.2 30 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione amide reductase; PDBTitle: glutathione amide reductase from chromatium gracile 48 c3ihgA_ not modelled 14.9 20 PDB header:flavoprotein, oxidoreductase Chain: A: PDB Molecule:rdme; PDBTitle: crystal structure of a ternary complex of aklavinone-112 hydroxylase with fad and aklavinone 49 c2e1mA_ not modelled 14.8 26 PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6 50 c3dmeB_ not modelled 14.6 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141 51 c1tytA_ not modelled 14.6 25 PDB header:oxidoreductase Chain: A: PDB Molecule:trypanothione reductase, oxidized form; PDBTitle: crystal and molecular structure of crithidia fasciculata2 trypanothione reductase at 2.6 angstroms resolution 52 c3ss4C_ not modelled 14.5 29 PDB header:hydrolase Chain: C: PDB Molecule:glutaminase c; PDBTitle: crystal structure of mouse glutaminase c, phosphate-bound form 53 d1kifa1 not modelled 14.4 25 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:D-aminoacid oxidase, N-terminal domain 54 d1h6va1 not modelled 14.1 32 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 55 d1chua2 not modelled 14.0 19 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 56 c3p4rM_ not modelled 13.9 20 PDB header:oxidoreductase Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit; PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate 57 c3nyeA_ not modelled 13.8 24 PDB header:oxidoreductase Chain: A: PDB Molecule:d-arginine dehydrogenase; PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine 58 d1seza1 not modelled 13.8 37 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 59 c3g5uB_ not modelled 13.7 26 PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding 60 c1ndaD_ not modelled 13.5 30 PDB header:oxidoreductase Chain: D: PDB Molecule:trypanothione oxidoreductase; PDBTitle: the structure of trypanosoma cruzi trypanothione reductase2 in the oxidized and nadph reduced state 61 d2gf3a1 not modelled 13.3 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 62 d1v59a1 not modelled 13.2 29 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 63 d1pj5a2 not modelled 13.1 33 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 64 c1kf6A_ not modelled 13.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:fumarate reductase flavoprotein; PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno 65 d2dw4a2 not modelled 12.8 32 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 66 d2bi7a1 not modelled 12.8 24 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:UDP-galactopyranose mutase, N-terminal domain 67 d2gmha1 not modelled 12.7 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 68 d1lpfa1 not modelled 12.6 39 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 69 d2hzaa1 not modelled 12.3 30 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 70 c2cfyB_ not modelled 12.3 30 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of human thioredoxin reductase 1 71 c3bnuA_ not modelled 12.2 26 PDB header:oxidoreductase Chain: A: PDB Molecule:polyamine oxidase fms1; PDBTitle: crystal structure of polyamine oxidase fms1 from2 saccharomyces cerevisiae in complex with bis-(3s,3's)-3 methylated spermine 72 d2i0za1 not modelled 12.1 36 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:HI0933 N-terminal domain-like 73 c2r4jA_ not modelled 11.9 43 PDB header:oxidoreductase Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap 74 c3bjrA_ not modelled 11.7 23 PDB header:hydrolase Chain: A: PDB Molecule:putative carboxylesterase; PDBTitle: crystal structure of a putative carboxylesterase (lp_1002) from2 lactobacillus plantarum wcfs1 at 2.09 a resolution 75 c1h83A_ not modelled 11.6 39 PDB header:oxidoreductase Chain: A: PDB Molecule:polyamine oxidase; PDBTitle: structure of polyamine oxidase in complex with2 1,8-diaminooctane 76 c3i6dA_ not modelled 11.5 37 PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: crystal structure of ppo from bacillus subtilis with af 77 d1rp0a1 not modelled 11.5 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Thi4-like 78 d1vg0a1 not modelled 11.3 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 79 c3l8kB_ not modelled 11.3 43 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of a dihydrolipoyl dehydrogenase from2 sulfolobus solfataricus 80 c2gqfA_ not modelled 11.2 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0933; PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd 81 c3hdqI_ not modelled 11.0 26 PDB header:isomerase Chain: I: PDB Molecule:udp-galactopyranose mutase; PDBTitle: crystal structure of udp-galactopyranose mutase (oxidized2 form) in complex with substrate 82 c2aczA_ not modelled 10.9 24 PDB header:oxidoreductase/electron transport Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site 83 c2yg4B_ not modelled 10.9 32 PDB header:oxidoreductase Chain: B: PDB Molecule:putrescine oxidase; PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine 84 c3gyxA_ not modelled 10.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 85 c3r9uA_ not modelled 10.6 29 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: thioredoxin-disulfide reductase from campylobacter jejuni. 86 d1r7la_ not modelled 10.4 20 Fold:Bacillus phage protein Superfamily:Bacillus phage protein Family:Bacillus phage protein 87 c3o0hA_ not modelled 10.4 30 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione reductase; PDBTitle: crystal structure of glutathione reductase from bartonella henselae 88 c3nixF_ not modelled 10.2 25 PDB header:oxidoreductase Chain: F: PDB Molecule:flavoprotein/dehydrogenase; PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43. 89 c1geuA_ not modelled 10.1 36 PDB header:oxidoreductase(flavoenzyme) Chain: A: PDB Molecule:glutathione reductase; PDBTitle: anatomy of an engineered nad-binding site 90 c2gmhA_ not modelled 10.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 91 d2gjca1 not modelled 10.0 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Thi4-like 92 d1onfa1 not modelled 9.9 45 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 93 c1yvvB_ not modelled 9.8 30 PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase, flavin-containing; PDBTitle: x-ray structurure of p. syringae q888a4 oxidoreductase at2 resolution 2.5a. northeast structural genomics consortium3 target psr10. 94 d1rhya2 not modelled 9.8 15 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Imidazole glycerol phosphate dehydratase 95 c2hqmB_ not modelled 9.8 45 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione reductase; PDBTitle: crystal structure of glutathione reductase glr1 from the yeast2 saccharomyces cerevisiae 96 c2qa2A_ not modelled 9.7 29 PDB header:oxidoreductase Chain: A: PDB Molecule:polyketide oxygenase cabe; PDBTitle: crystal structure of cabe, an aromatic hydroxylase from angucycline2 biosynthesis, determined to 2.7 a resolution 97 c1kifE_ not modelled 9.7 26 PDB header:flavoprotein Chain: E: PDB Molecule:d-amino acid oxidase; PDBTitle: d-amino acid oxidase from pig kidney 98 c2b9yA_ not modelled 9.7 29 PDB header:isomerase Chain: A: PDB Molecule:putative aminooxidase; PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes 99 d1jnra2 not modelled 9.4 32 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0