Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0AC86
DateThu Jan 5 11:17:35 GMT 2012
Unique Job IDff0cc1efc3e4ad23

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3ddsB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:glycogen phosphorylase, liver form;
PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261
Confidence and coverage
Confidence:100.0% Coverage: 98%
797 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNATLFAVRDRLVERWLRS
Secondary structure 
SS confidence 
Disorder  ?????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  NRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGALEAMGLNLEELIDEENDPG
Secondary structure 
SS confidence 
Disorder 
?
??
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGSQKESPDYWLEYGNPWE
Secondary structure 
SS confidence 
Disorder  ?????
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  FKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQIIPGYDTDATNTLRLWSAQASS
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  EINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSSTIQDILSR
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  HYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRLLIDEHQFSWDDAFEVCCQVFSYTNHT
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LMSEALETWPVDMLGKILPRHLQIIFEINDYFLKTLQEQYPNDTDLLGRASIIDESNGRR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  VRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIFPGRFTNVTNGVTPRRWLAVANPS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  LSAVLDEHLGRNWRTDLSLLNELQQHCDFPMVNHAVHQAKLENKKRLAEYIAQQLNVVVN
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  PKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKH
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  IIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSN
Secondary structure 
SS confidence 
Disorder 
???
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  MKFALNGALTIGTLDGANVEMLDHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEEL
Secondary structure 
SS confidence 
Disorder 
?
????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  HQVLTQIGSGVFSPEDPGRYRDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEW
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........790.........800.........810.....
Sequence  TAKAMLNIANMGYFSSDRTIKEYADHIWHIDPVRL
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3dds chain B

3D model

Region: 13 - 813
Aligned: 797
Modelled: 801
Confidence: 100.0%
Identity: 50%
PDB header:transferase
Chain: B: PDB Molecule:glycogen phosphorylase, liver form;
PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261

Phyre2

PDB 2gj4 chain A domain 1

3D model

Region: 13 - 815
Aligned: 789
Modelled: 803
Confidence: 100.0%
Identity: 50%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Oligosaccharide phosphorylase

Phyre2

PDB 2ati chain A domain 1

3D model

Region: 13 - 813
Aligned: 789
Modelled: 801
Confidence: 100.0%
Identity: 51%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Oligosaccharide phosphorylase

Phyre2

PDB 1ygp chain A

3D model

Region: 13 - 813
Aligned: 796
Modelled: 801
Confidence: 100.0%
Identity: 47%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Oligosaccharide phosphorylase

Phyre2

PDB 2c4m chain A

3D model

Region: 18 - 814
Aligned: 776
Modelled: 783
Confidence: 100.0%
Identity: 42%
PDB header:transferase
Chain: A: PDB Molecule:glycogen phosphorylase;
PDBTitle: starch phosphorylase: structural studies explain oxyanion-2 dependent kinetic stability and regulatory control.

Phyre2

PDB 1l5w chain A

3D model

Region: 8 - 812
Aligned: 795
Modelled: 798
Confidence: 100.0%
Identity: 46%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Oligosaccharide phosphorylase

Phyre2

PDB 3nb0 chain A

3D model

Region: 269 - 805
Aligned: 372
Modelled: 390
Confidence: 99.4%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase

Phyre2

PDB 3o3c chain D

3D model

Region: 288 - 805
Aligned: 348
Modelled: 368
Confidence: 99.3%
Identity: 20%
PDB header:transferase
Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glycogen synthase basal state udp complex

Phyre2

PDB 1rzu chain A

3D model

Region: 124 - 805
Aligned: 443
Modelled: 492
Confidence: 98.7%
Identity: 16%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 2x6r chain A

3D model

Region: 539 - 805
Aligned: 182
Modelled: 200
Confidence: 98.6%
Identity: 19%
PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose

Phyre2

PDB 2xmp chain B

3D model

Region: 539 - 810
Aligned: 187
Modelled: 205
Confidence: 98.3%
Identity: 17%
PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp

Phyre2

PDB 2qzs chain A

3D model

Region: 524 - 805
Aligned: 192
Modelled: 206
Confidence: 98.3%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)

Phyre2

PDB 2r60 chain A

3D model

Region: 539 - 807
Aligned: 186
Modelled: 204
Confidence: 98.0%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii

Phyre2

PDB 1uqt chain A

3D model

Region: 540 - 812
Aligned: 195
Modelled: 208
Confidence: 97.9%
Identity: 13%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Trehalose-6-phosphate synthase, OtsA

Phyre2

PDB 1uqu chain B

3D model

Region: 536 - 812
Aligned: 199
Modelled: 210
Confidence: 97.9%
Identity: 11%
PDB header:synthase
Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase;
PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.

Phyre2

PDB 2bis chain A domain 1

3D model

Region: 119 - 805
Aligned: 413
Modelled: 448
Confidence: 97.8%
Identity: 17%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 3oy2 chain A

3D model

Region: 532 - 805
Aligned: 212
Modelled: 225
Confidence: 97.7%
Identity: 16%
PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a

Phyre2

PDB 3s29 chain C

3D model

Region: 536 - 809
Aligned: 198
Modelled: 213
Confidence: 97.7%
Identity: 17%
PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.

Phyre2

PDB 3c4v chain B

3D model

Region: 539 - 805
Aligned: 173
Modelled: 185
Confidence: 97.5%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.

Phyre2

PDB 3oka chain A

3D model

Region: 539 - 805
Aligned: 175
Modelled: 186
Confidence: 97.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)

Phyre2
1
c3ddsB_
2
d2gj4a1
3
d2atia1
4
d1ygpa_
5
c2c4mA_
6
d1l5wa_
7
c3nb0A_
8
c3o3cD_
9
d1rzua_
10
c2x6rA_
11
c2xmpB_
12
c2qzsA_
13
c2r60A_
14
d1uqta_
15
c1uquB_
16
d2bisa1
17
c3oy2A_
18
c3s29C_
19
c3c4vB_
20
c3okaA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ddsB_
100.0 50 PDB header:transferase
Chain: B: PDB Molecule:glycogen phosphorylase, liver form;
PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261
2d2gj4a1
100.0 50 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
3d2atia1
100.0 51 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
4d1ygpa_
100.0 47 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
5c2c4mA_
100.0 42 PDB header:transferase
Chain: A: PDB Molecule:glycogen phosphorylase;
PDBTitle: starch phosphorylase: structural studies explain oxyanion-2 dependent kinetic stability and regulatory control.
6d1l5wa_
100.0 46 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
7c3nb0A_
99.4 18 PDB header:transferase
Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase
8c3o3cD_
99.3 20 PDB header:transferase
Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glycogen synthase basal state udp complex
9d1rzua_
98.7 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
10c2x6rA_
98.6 19 PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose
11c2xmpB_
98.3 17 PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp
12c2qzsA_
98.3 18 PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)
13c2r60A_
98.0 20 PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
14d1uqta_
97.9 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Trehalose-6-phosphate synthase, OtsA
15c1uquB_
97.9 11 PDB header:synthase
Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase;
PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.
16d2bisa1
97.8 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
17c3oy2A_
97.7 16 PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a
18c3s29C_
97.7 17 PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.
19c3c4vB_
97.5 18 PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.
20c3okaA_
97.0 18 PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
21d2bfwa1
not modelled 96.8 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
22c2gejA_
not modelled 96.4 13 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man
23c2jjmH_
not modelled 96.4 19 PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.
24d2f9fa1
not modelled 96.0 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
25d2iw1a1
not modelled 95.3 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
26c2x0dA_
not modelled 93.4 11 PDB header:transferase
Chain: A: PDB Molecule:wsaf;
PDBTitle: apo structure of wsaf
27c2vsnB_
not modelled 93.3 15 PDB header:transferase
Chain: B: PDB Molecule:xcogt;
PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
28c3ot5D_
not modelled 93.2 12 PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes
29d1f6da_
not modelled 90.5 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
30c3pe3D_
not modelled 90.2 18 PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
31c3dzcA_
not modelled 84.0 11 PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae.
32c3rhzB_
not modelled 79.6 13 PDB header:transferase
Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein;
PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions
33c2iv3B_
not modelled 62.4 20 PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis
34c3qhpB_
not modelled 61.2 15 PDB header:transferase
Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j
PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori
35c1yz4A_
not modelled 59.2 14 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase-like 15 isoform a;
PDBTitle: crystal structure of dusp15
36c2g6zB_
not modelled 47.5 22 PDB header:hydrolase
Chain: B: PDB Molecule:dual specificity protein phosphatase 5;
PDBTitle: crystal structure of human dusp5
37d1w36c1
not modelled 45.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
38c2z8tX_
not modelled 41.3 15 PDB header:hydrolase
Chain: X: PDB Molecule:protein-glutaminase;
PDBTitle: crystal structure of protein-glutaminase of c.proteolyticum2 strain 9670
39d1m3ga_
not modelled 38.4 16 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
40c1wrmA_
not modelled 37.1 21 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase 22;
PDBTitle: crystal structure of jsp-1
41c2e0tA_
not modelled 37.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase 26;
PDBTitle: crystal structure of catalytic domain of dual specificity phosphatase2 26, ms0830 from homo sapiens
42d1x99a_
not modelled 33.1 44 Fold:Cytolysin/lectin
Superfamily:Cytolysin/lectin
Family:Fungal fruit body lectin
43d1y2ta_
not modelled 32.6 44 Fold:Cytolysin/lectin
Superfamily:Cytolysin/lectin
Family:Fungal fruit body lectin
44c2oudA_
not modelled 31.2 20 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 10;
PDBTitle: crystal structure of the catalytic domain of human mkp5
45d1vhra_
not modelled 30.4 19 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
46c3rgqA_
not modelled 29.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1;
PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p
47c2npiB_
not modelled 27.9 14 PDB header:transcription
Chain: B: PDB Molecule:protein clp1;
PDBTitle: clp1-atp-pcf11 complex
48c2ofeA_
not modelled 27.8 44 PDB header:sugar binding protein
Chain: A: PDB Molecule:sclerotium rolfsii lectin;
PDBTitle: the crystal structure of sclerotium rolfsii lectin in complex with n-2 acetyl-d-glucosamine
49c2wgpA_
not modelled 25.8 16 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 14;
PDBTitle: crystal structure of human dual specificity phosphatase 14
50c2hcmA_
not modelled 25.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase;
PDBTitle: crystal structure of mouse putative dual specificity phosphatase2 complexed with zinc tungstate, new york structural genomics3 consortium
51d3etja2
not modelled 24.7 38 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
52c3se4B_
not modelled 24.5 25 PDB header:immune system receptor
Chain: B: PDB Molecule:interferon omega-1;
PDBTitle: human ifnw-ifnar ternary complex
53c2y96A_
not modelled 22.8 22 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity phosphatase dupd1;
PDBTitle: structure of human dual-specificity phosphatase 27
54c1yhuA_
not modelled 22.6 16 PDB header:oxygen storage/transport
Chain: A: PDB Molecule:hemoglobin a1 chain;
PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits.
55c2imgA_
not modelled 22.5 11 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 23;
PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion
56c3emuA_
not modelled 22.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:leucine rich repeat and phosphatase domain
PDBTitle: crystal structure of a leucine rich repeat and phosphatase2 domain containing protein from entamoeba histolytica
57c2j17A_
not modelled 21.1 24 PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine-protein phosphatase yil113w;
PDBTitle: ptyr bound form of sdp-1
58c3prjB_
not modelled 21.0 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: role of packing defects in the evolution of allostery and induced fit2 in human udp-glucose dehydrogenase.
59d1m1nb_
not modelled 20.9 19 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
60c2nt2C_
not modelled 20.8 18 PDB header:hydrolase
Chain: C: PDB Molecule:protein phosphatase slingshot homolog 2;
PDBTitle: crystal structure of slingshot phosphatase 2
61c3piwA_
not modelled 19.5 24 PDB header:cytokine
Chain: A: PDB Molecule:type i interferon 2;
PDBTitle: zebrafish interferon 2
62d1u3da1
not modelled 19.4 26 Fold:Cryptochrome/photolyase FAD-binding domain
Superfamily:Cryptochrome/photolyase FAD-binding domain
Family:Cryptochrome/photolyase FAD-binding domain
63d1mv8a1
not modelled 19.4 17 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
64d1dlja1
not modelled 19.1 28 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
65c2gwoC_
not modelled 19.0 13 PDB header:hydrolase
Chain: C: PDB Molecule:dual specificity protein phosphatase 13;
PDBTitle: crystal structure of tmdp
66c3bdkB_
not modelled 18.8 17 PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
67d1v3aa_
not modelled 18.8 27 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
68c3pn1A_
not modelled 18.5 19 PDB header:ligase/ligase inhibitor
Chain: A: PDB Molecule:dna ligase;
PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo
69d1v9pa3
not modelled 18.0 13 Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
70c2a6aB_
not modelled 17.7 16 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protein tm0874;
PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution
71c2r0bA_
not modelled 17.6 22 PDB header:hydrolase
Chain: A: PDB Molecule:serine/threonine/tyrosine-interacting protein;
PDBTitle: crystal structure of human tyrosine phosphatase-like2 serine/threonine/tyrosine-interacting protein
72d2f8la1
not modelled 17.4 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N-6 DNA Methylase-like
73d1o58a_
not modelled 17.1 16 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
74d1ta8a_
not modelled 16.9 26 Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
75d3buxb2
not modelled 16.6 20 Fold:N-cbl like
Superfamily:N-terminal domain of cbl (N-cbl)
Family:N-terminal domain of cbl (N-cbl)
76d1b5la_
not modelled 15.4 24 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
77d1v4va_
not modelled 15.2 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
78d1r30a_
not modelled 15.0 14 Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Biotin synthase
79c1r30A_
not modelled 15.0 14 PDB header:transferase
Chain: A: PDB Molecule:biotin synthase;
PDBTitle: the crystal structure of biotin synthase, an s-2 adenosylmethionine-dependent radical enzyme
80c3bacA_
not modelled 14.7 19 PDB header:ligase
Chain: A: PDB Molecule:dna ligase;
PDBTitle: structural basis for the inhibition of bacterial nad+2 dependent dna ligase
81c2y0dB_
not modelled 14.5 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:udp-glucose dehydrogenase;
PDBTitle: bcec mutation y10k
82c2k29A_
not modelled 14.2 27 PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
83c1eysC_
not modelled 13.8 18 PDB header:electron transport
Chain: C: PDB Molecule:photosynthetic reaction center;
PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum
84d1eysc_
not modelled 13.8 18 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Photosynthetic reaction centre (cytochrome subunit)
85d1mkpa_
not modelled 13.5 13 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
86c3f4yF_
not modelled 13.4 64 PDB header:viral protein
Chain: F: PDB Molecule:mutant peptide derived from hiv gp41 chr domain;
PDBTitle: hiv gp41 six-helix bundle containing a mutant chr alpha-2 peptide sequence
87c2o3jC_
not modelled 13.3 19 PDB header:oxidoreductase
Chain: C: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: structure of caenorhabditis elegans udp-glucose dehydrogenase
88d1ohea2
not modelled 12.9 13 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
89c2esbA_
not modelled 12.7 16 PDB header:hydrolase
Chain: A: PDB Molecule:dual specificity protein phosphatase 18;
PDBTitle: crystal structure of human dusp18
90c3rz2B_
not modelled 12.6 28 PDB header:hydrolase
Chain: B: PDB Molecule:protein tyrosine phosphatase type iva 1;
PDBTitle: crystal of prl-1 complexed with peptide
91d1au1a_
not modelled 12.6 10 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
92d1qkia1
not modelled 12.6 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
93d1rh2a_
not modelled 12.6 29 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
94c3r6mD_
not modelled 12.5 25 PDB header:hydrolase
Chain: D: PDB Molecule:yeaz, resuscitation promoting factor;
PDBTitle: crystal structure of vibrio parahaemolyticus yeaz
95c3cvyA_
not modelled 12.3 23 PDB header:lyase/dna
Chain: A: PDB Molecule:re11660p;
PDBTitle: drosophila melanogaster (6-4) photolyase bound to repaired2 ds dna
96d1di1a_
not modelled 12.3 13 Fold:Terpenoid synthases
Superfamily:Terpenoid synthases
Family:Aristolochene/pentalenene synthase
97c1fbvA_
not modelled 12.2 20 PDB header:ligase
Chain: A: PDB Molecule:signal transduction protein cbl;
PDBTitle: structure of a cbl-ubch7 complex: ring domain function in2 ubiquitin-protein ligases
98d1i9sa_
not modelled 12.1 14 Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
99d1wu3i_
not modelled 12.1 10 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0