Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	I	V	Y	L	T	V	T	G	E	Q	Q	G	S	I	S	A	G	C	G	T	S	E	S	T	G	N	R	W	Q	S	G	H	E	D	E	I	F	T	F	S	L	L	N	N	I	N	N	T	G	L	G	S	Q	F	H	G	I
Secondary structure
SS confidence
Disorder		?	?	?	?								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?															?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	F	C	K	L	I	D	K	S	T	P	L	F	I	N	S	I	N	N	N	E	Q	L	F	M	G	F	D	F	Y	R	I	N	R	F	G	R	L	E	K	Y	Y	Y	I	Q	L	R	G	A	F	L	S	A	I	H	H	Q	I	I	E
Secondary structure
SS confidence
Disorder																																																								?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	Q	L	D	T	E	T	I	T	I	S	Y	E	F	I	L	C	Q	H	L	I	A	N	T	E	F	S	Y	L	A	L	P	E	N	Y	N	R	L	F	L	P	N	S	K	N	Q	T	N	N	R	F	K	T	L	N	S	K	A	I	G
Secondary structure
SS confidence
Disorder			?																																		?						?	?	?	?	?	?	?	?	?	?	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	L	L	A	A	G	G	V	Y	N	G	N	I	E	G	F	R	D	T	A	E	K	L	G	G	D	A	I	K	G	Y	D	Q	I	L	N	E	K	T	A	G	I	A	I	A	T	A	S	I	L	L	T	K	R	S	N	V	D	T	Y
Secondary structure
SS confidence
Disorder												?	?										?	?	?	?													?	?	?					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	E	I	N	S	Y	L	G	K	L	R	G	Q	Q	K	L	L	D	G	I	D	I	I	E	I	I	Y	I	K	R	P	S	K	D	L	A	N	L	R	K	E	F	N	K	T	V	R	K	N	F	L	I	K	L	A	K	T	S	E	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?	?	?	?	?	?		?	?	?											?	?	?																									?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	G	R	F	N	A	E	D	L	L	R	M	R	K	G	N	V	P	L	N	Y	N	V	H	H	K	L	S	L	D	D	G	G	T	N	D	F	E	N	L	V	L	I	E	N	E	P	Y	H	K	V	F	T	N	M	Q	S	R	I	A
Secondary structure
SS confidence
Disorder		?	?		?									?	?	?	?	?	?	?	?		?									?	?																						?			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Sequence		K	G	I	L	V	G	E	S	K	I	T	P	W	A	I	P	S	G	S	I	Y	P	P	M	K	N	I	M	D	H	T	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?													?								?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3he1 chain F Region: 4 - 149 Aligned: 140 Modelled: 146 Confidence: 100.0% Identity: 28% PDB header:structural genomics, unknown function Chain: F: PDB Molecule:major exported hcp3 protein; PDBTitle: secreted protein hcp3 from pseudomonas aeruginosa. Phyre2 PDB 1y12 chain A domain 1 Region: 2 - 145 Aligned: 130 Modelled: 144 Confidence: 100.0% Identity: 17% Fold: Hcp1-like Superfamily: Hcp1-like Family: Hcp1-like Phyre2 PDB 3v4h chain A Region: 5 - 144 Aligned: 118 Modelled: 140 Confidence: 100.0% Identity: 17% PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a type vi secretion system effector from yersinia2 pestis Phyre2 PDB 3eaa chain B Region: 2 - 145 Aligned: 128 Modelled: 144 Confidence: 100.0% Identity: 10% PDB header:unknown function Chain: B: PDB Molecule:evpc; PDBTitle: structure of a type six secretion system protein Phyre2 PDB 2gyk chain B domain 1 Region: 275 - 343 Aligned: 69 Modelled: 69 Confidence: 99.7% Identity: 32% Fold: His-Me finger endonucleases Superfamily: His-Me finger endonucleases Family: HNH-motif Phyre2 PDB 2jb0 chain B domain 1 Region: 282 - 342 Aligned: 59 Modelled: 61 Confidence: 97.8% Identity: 31% Fold: His-Me finger endonucleases Superfamily: His-Me finger endonucleases Family: HNH-motif Phyre2 PDB 7cei chain B Region: 282 - 342 Aligned: 60 Modelled: 61 Confidence: 97.7% Identity: 28% PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein Phyre2 PDB 2qgp chain A Region: 318 - 343 Aligned: 26 Modelled: 26 Confidence: 92.5% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. Phyre2 PDB 2jox chain A Region: 121 - 153 Aligned: 33 Modelled: 33 Confidence: 64.6% Identity: 24% PDB header:transcription Chain: A: PDB Molecule:churchill protein; PDBTitle: embryonic neural inducing factor churchill is not a dna-2 binding zinc finger protein: solution structure reveals a3 solvent-exposed beta-sheet and zinc binuclear cluster Phyre2 PDB 1n9p chain A Region: 30 - 73 Aligned: 44 Modelled: 44 Confidence: 59.7% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Cytoplasmic domain of inward rectifier potassium channel Phyre2 PDB 1u3e chain M Region: 315 - 343 Aligned: 27 Modelled: 29 Confidence: 48.2% Identity: 22% PDB header:dna binding protein/dna Chain: M: PDB Molecule:hnh homing endonuclease; PDBTitle: dna binding and cleavage by the hnh homing endonuclease i-hmui Phyre2 PDB 2gq1 chain A Region: 179 - 250 Aligned: 66 Modelled: 72 Confidence: 43.5% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:fructose-1,6-bisphosphatase; PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions Phyre2 PDB 1xl4 chain A domain 1 Region: 30 - 73 Aligned: 44 Modelled: 44 Confidence: 41.6% Identity: 16% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: Cytoplasmic domain of inward rectifier potassium channel Phyre2 PDB 1u4f chain D Region: 59 - 73 Aligned: 15 Modelled: 15 Confidence: 27.9% Identity: 40% PDB header:allergen Chain: D: PDB Molecule:inward rectifier potassium channel 2; PDBTitle: crystal structure of cytoplasmic domains of irk1 (kir2.1)2 channel Phyre2 PDB 2gix chain C Region: 59 - 72 Aligned: 14 Modelled: 14 Confidence: 27.3% Identity: 43% PDB header:metal transport Chain: C: PDB Molecule:inward rectifier potassium channel 2; PDBTitle: cytoplasmic domain structure of kir2.1 containing2 andersen's mutation r218q and rescue mutation t309k Phyre2 PDB 1bk4 chain A Region: 188 - 253 Aligned: 60 Modelled: 66 Confidence: 27.0% Identity: 25% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 1nuw chain A Region: 188 - 250 Aligned: 57 Modelled: 63 Confidence: 26.8% Identity: 23% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 PDB 2xky chain I Region: 59 - 72 Aligned: 14 Modelled: 14 Confidence: 26.0% Identity: 43% PDB header:metal transport Chain: I: PDB Molecule:inward rectifier potassium channel 2; PDBTitle: single particle analysis of kir2.1nc_4 in negative stain Phyre2 PDB 2e4f chain A Region: 30 - 72 Aligned: 43 Modelled: 43 Confidence: 25.0% Identity: 12% PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2 Phyre2 PDB 1fta chain A Region: 188 - 250 Aligned: 57 Modelled: 63 Confidence: 24.5% Identity: 23% Fold: Carbohydrate phosphatase Superfamily: Carbohydrate phosphatase Family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like Phyre2 1 c3he1F_ 2 d1y12a1 3 c3v4hA_ 4 c3eaaB_ 5 d2gykb1 6 d2jb0b1 7 c7ceiB_ 8 c2qgpA_ 9 c2joxA_ 10 d1n9pa_ 11 c1u3eM_ 12 c2gq1A_ 13 d1xl4a1 14 c1u4fD_ 15 c2gixC_ 16 d1bk4a_ 17 d1nuwa_ 18 c2xkyI_ 19 c2e4fA_ 20 d1ftaa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3he1F_ 100.0 28 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:major exported hcp3 protein; PDBTitle: secreted protein hcp3 from pseudomonas aeruginosa. 2 d1y12a1 100.0 17 Fold:Hcp1-like Superfamily:Hcp1-like Family:Hcp1-like 3 c3v4hA_ 100.0 17 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a type vi secretion system effector from yersinia2 pestis 4 c3eaaB_ 100.0 10 PDB header:unknown function Chain: B: PDB Molecule:evpc; PDBTitle: structure of a type six secretion system protein 5 d2gykb1 99.7 32 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 6 d2jb0b1 97.8 31 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:HNH-motif 7 c7ceiB_ 97.7 28 PDB header:immune system Chain: B: PDB Molecule:protein (colicin e7 immunity protein); PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein 8 c2qgpA_ 92.5 23 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 9 c2joxA_ 64.6 24 PDB header:transcription Chain: A: PDB Molecule:churchill protein; PDBTitle: embryonic neural inducing factor churchill is not a dna-2 binding zinc finger protein: solution structure reveals a3 solvent-exposed beta-sheet and zinc binuclear cluster 10 d1n9pa_ 59.7 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 11 c1u3eM_ 48.2 22 PDB header:dna binding protein/dna Chain: M: PDB Molecule:hnh homing endonuclease; PDBTitle: dna binding and cleavage by the hnh homing endonuclease i-hmui 12 c2gq1A_ 43.5 26 PDB header:hydrolase Chain: A: PDB Molecule:fructose-1,6-bisphosphatase; PDBTitle: crystal structure of recombinant type i fructose-1,6-bisphosphatase2 from escherichia coli complexed with sulfate ions 13 d1xl4a1 41.6 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 14 c1u4fD_ 27.9 40 PDB header:allergen Chain: D: PDB Molecule:inward rectifier potassium channel 2; PDBTitle: crystal structure of cytoplasmic domains of irk1 (kir2.1)2 channel 15 c2gixC_ 27.3 43 PDB header:metal transport Chain: C: PDB Molecule:inward rectifier potassium channel 2; PDBTitle: cytoplasmic domain structure of kir2.1 containing2 andersen's mutation r218q and rescue mutation t309k 16 d1bk4a_ 27.0 25 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 17 d1nuwa_ 26.8 23 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 18 c2xkyI_ 26.0 43 PDB header:metal transport Chain: I: PDB Molecule:inward rectifier potassium channel 2; PDBTitle: single particle analysis of kir2.1nc_4 in negative stain 19 c2e4fA_ 25.0 12 PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2 20 d1ftaa_ 24.5 23 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 21 c2fhyL_ not modelled 24.2 23 PDB header:hydrolase Chain: L: PDB Molecule:fructose-1,6-bisphosphatase 1; PDBTitle: structure of human liver fpbase complexed with a novel2 benzoxazole as allosteric inhibitor 22 d2ouwa1 not modelled 22.8 13 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 23 d1p7ba1 not modelled 20.3 43 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 24 d1u3em1 not modelled 18.5 17 Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:Intron-encoded homing endonucleases 25 d1ne9a1 not modelled 18.3 17 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:FemXAB nonribosomal peptidyltransferases 26 c3jycA_ not modelled 15.8 17 PDB header:metal transport Chain: A: PDB Molecule:inward-rectifier k+ channel kir2.2; PDBTitle: crystal structure of the eukaryotic strong inward-rectifier2 k+ channel kir2.2 at 3.1 angstrom resolution 27 d1skye2 not modelled 15.8 29 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:N-terminal domain of alpha and beta subunits of F1 ATP synthase Family:N-terminal domain of alpha and beta subunits of F1 ATP synthase 28 c2qp2A_ not modelled 15.5 21 PDB header:unknown function Chain: A: PDB Molecule:unknown protein; PDBTitle: structure of a macpf/perforin-like protein 29 c3cfhB_ not modelled 14.9 18 PDB header:fluorescent protein Chain: B: PDB Molecule:gfp-like photoswitchable fluorescent protein; PDBTitle: photoswitchable red fluorescent protein psrfp, off-state 30 c2gw4D_ not modelled 14.8 21 PDB header:luminescent protein Chain: D: PDB Molecule:kaede; PDBTitle: crystal structure of stony coral fluorescent protein kaede, red form 31 c1zggA_ not modelled 13.7 12 PDB header:hydrolase Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine- PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis 32 c2otbB_ not modelled 13.5 21 PDB header:fluorescent protein Chain: B: PDB Molecule:gfp-like fluorescent chromoprotein cfp484; PDBTitle: crystal structure of a monomeric cyan fluorescent protein2 in the fluorescent state 33 c1p7bB_ not modelled 13.3 47 PDB header:metal transport Chain: B: PDB Molecule:integral membrane channel and cytosolic domains; PDBTitle: crystal structure of an inward rectifier potassium channel 34 c3lf4B_ not modelled 13.3 21 PDB header:fluorescent protein Chain: B: PDB Molecule:fluorescent timer precursor blue102; PDBTitle: crystal structure of fluorescent timer precursor blue102 35 c2y7cA_ not modelled 12.7 25 PDB header:transferase Chain: A: PDB Molecule:type-1 restriction enzyme ecoki specificity protein; PDBTitle: atomic model of the ocr-bound methylase complex from the2 type i restriction-modification enzyme ecoki (m2s1). based3 on fitting into em map 1534. 36 d2fzta1 not modelled 12.3 26 Fold:Methionine synthase domain-like Superfamily:TM0693-like Family:TM0693-like 37 c2zo6A_ not modelled 11.8 29 PDB header:luminescent protein Chain: A: PDB Molecule:cyan-emitting gfp-like protein, kusabira-cyan (kcy); PDBTitle: crystal structure of kusabira-cyan (kcy), a cyan-emitting gfp-like2 protein 38 d1xqma_ not modelled 11.4 18 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 39 c2g3dB_ not modelled 11.4 21 PDB header:luminescent protein Chain: B: PDB Molecule:green fluorescent protein; PDBTitle: structure of s65g y66a gfp variant after spontaneous2 peptide hydrolysis 40 c2ddcA_ not modelled 11.4 29 PDB header:luminescent protein Chain: A: PDB Molecule:photoconvertible fluorescent protein; PDBTitle: unique behavior of a histidine responsible for an2 engineered green-to-red photoconversion process 41 d1ggxa_ not modelled 11.1 21 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 42 d1d9qa_ not modelled 10.9 20 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 43 c3l4hA_ not modelled 10.9 16 PDB header:protein binding Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw1; PDBTitle: helical box domain and second ww domain of the human e3 ubiquitin-2 protein ligase hecw1 44 c2zmwC_ not modelled 10.8 25 PDB header:luminescent protein Chain: C: PDB Molecule:fluorescent protein; PDBTitle: crystal structure of monomeric kusabira-orange (mko),2 orange-emitting gfp-like protein, at ph 6.0 45 d1spia_ not modelled 10.7 24 Fold:Carbohydrate phosphatase Superfamily:Carbohydrate phosphatase Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like 46 c2c9jG_ not modelled 10.7 25 PDB header:luminescent protein Chain: G: PDB Molecule:green fluorescent protein fp512; PDBTitle: structure of the fluorescent protein cmfp512 at 1.35a from2 cerianthus membranaceus 47 d1fc2c_ not modelled 10.4 22 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 48 c2zo7A_ not modelled 10.3 29 PDB header:luminescent protein Chain: A: PDB Molecule:cyan/green-emitting gfp-like protein, kusabira-cyan mutant PDBTitle: crystal structure of a kusabira-cyan mutant (kcy-r1), a cyan/green-2 emitting gfp-like protein 49 c1olpB_ not modelled 10.3 17 PDB header:hydrolase Chain: B: PDB Molecule:alpha-toxin; PDBTitle: alpha toxin from clostridium absonum 50 c2g9lA_ not modelled 10.2 38 PDB header:antibiotic Chain: A: PDB Molecule:gaegurin-4; PDBTitle: the high-resolution solution conformation of an2 antimicrobial peptide gaegurin 4 and its mode of membrane3 interaction 51 d2rh7a1 not modelled 10.0 21 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 52 c3cglE_ not modelled 10.0 21 PDB header:fluorescent protein Chain: E: PDB Molecule:gfp-like fluorescent chromoprotein dsfp483; PDBTitle: crystal structure and raman studies of dsfp483, a cyan fluorescent2 protein from discosoma striata 53 c1yzwB_ not modelled 9.9 18 PDB header:luminescent protein Chain: B: PDB Molecule:gfp-like non-fluorescent chromoprotein; PDBTitle: the 2.1a crystal structure of the far-red fluorescent2 protein hcred: inherent conformational flexibility of the3 chromophore 54 c2bjqA_ not modelled 9.8 15 PDB header:motility Chain: A: PDB Molecule:mfp2a; PDBTitle: crystal structure of the nematode sperm cell motility2 protein mfp2 55 c3gb3B_ not modelled 9.7 7 PDB header:fluorescent protein Chain: B: PDB Molecule:killerred; PDBTitle: x-ray structure of genetically encoded photosensitizer2 killerred in native form 56 c3simA_ not modelled 9.4 25 PDB header:hydrolase Chain: A: PDB Molecule:protein, family 18 chitinase; PDBTitle: crystallographic structure analysis of family 18 chitinase from crocus2 vernus 57 c2kxhB_ not modelled 9.0 64 PDB header:protein binding Chain: B: PDB Molecule:peptide of far upstream element-binding protein 1; PDBTitle: solution structure of the first two rrm domains of fir in the complex2 with fbp nbox peptide 58 c3myuB_ not modelled 8.8 20 PDB header:vib binding protein Chain: B: PDB Molecule:high affinity transport system protein p37; PDBTitle: mycoplasma genitalium mg289 59 c3sggA_ not modelled 8.8 36 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical hydrolase; PDBTitle: crystal structure of a hypothetical hydrolase (bt_2193) from2 bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution 60 c2y50A_ not modelled 8.7 23 PDB header:hydrolase Chain: A: PDB Molecule:collagenase; PDBTitle: crystal structure of collagenase g from clostridium2 histolyticum at 2.80 angstrom resolution 61 c2c9iG_ not modelled 8.7 18 PDB header:luminescent protein Chain: G: PDB Molecule:green fluorescent protein asfp499; PDBTitle: structure of the fluorescent protein asfp499 from anemonia2 sulcata 62 c2ib5H_ not modelled 8.7 14 PDB header:luminescent protein Chain: H: PDB Molecule:chromo protein; PDBTitle: structural characterization of a blue chromoprotein and its yellow2 mutant from the sea anemone cnidopus japonicus 63 c2z6zA_ not modelled 8.6 25 PDB header:fluorescent protein Chain: A: PDB Molecule:fluorescent protein dronpa; PDBTitle: crystal structure of a photoswitchable gfp-like protein2 dronpa in the bright-state 64 c2xfyA_ not modelled 8.5 21 PDB header:hydrolase Chain: A: PDB Molecule:beta-amylase; PDBTitle: crystal structure of barley beta-amylase complexed with2 alpha-cyclodextrin 65 d1moua_ not modelled 8.4 21 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 66 c2icrD_ not modelled 8.4 25 PDB header:fluorescent protein Chain: D: PDB Molecule:red fluorescent protein zoanrfp; PDBTitle: red fluorescent protein zrfp574 from zoanthus sp. 67 c2hpwA_ not modelled 8.3 21 PDB header:luminescent protein Chain: A: PDB Molecule:green fluorescent protein; PDBTitle: green fluorescent protein from clytia gregaria 68 c3eplA_ not modelled 8.3 17 PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism 69 d1deeg_ not modelled 8.2 22 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 70 c1amlA_ not modelled 8.1 50 PDB header:serine protease inhibitor Chain: A: PDB Molecule:amyloid a4; PDBTitle: the alzheimer`s disease amyloid a4 peptide (residues 1-40) 71 d2jwda1 not modelled 7.8 22 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 72 c3nezB_ not modelled 7.8 21 PDB header:fluorescent protein Chain: B: PDB Molecule:mrojoa; PDBTitle: mrojoa 73 d1uisa_ not modelled 7.7 18 Fold:GFP-like Superfamily:GFP-like Family:Fluorescent proteins 74 d2cwqa1 not modelled 7.5 14 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 75 c3uksB_ not modelled 7.5 17 PDB header:hydrolase Chain: B: PDB Molecule:sedoheptulose-1,7 bisphosphatase, putative; PDBTitle: 1.85 angstrom crystal structure of putative sedoheptulose-1,72 bisphosphatase from toxoplasma gondii 76 d1hcra_ not modelled 7.1 63 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 77 d1ijwc_ not modelled 7.1 63 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 78 c2y6xA_ not modelled 7.0 19 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kd protein; PDBTitle: structure of psb27 from thermosynechococcus elongatus 79 c3t7hB_ not modelled 6.9 19 PDB header:ligase Chain: B: PDB Molecule:ubiquitin-like modifier-activating enzyme atg7; PDBTitle: atg8 transfer from atg7 to atg3: a distinctive e1-e2 architecture and2 mechanism in the autophagy pathway 80 d1t3la2 not modelled 6.8 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 81 d1x9aa_ not modelled 6.7 22 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrH-like 82 d1lrza1 not modelled 6.7 35 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Methicillin resistance protein FemA probable tRNA-binding arm 83 d1khoa2 not modelled 6.6 21 Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Alpha-toxin, C-terminal domain 84 d1lp1b_ not modelled 6.6 22 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 85 d1vyva2 not modelled 6.4 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 86 d1vyua2 not modelled 6.3 26 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 87 d1saza1 not modelled 6.2 29 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 88 c2qksA_ not modelled 6.2 19 PDB header:metal transport Chain: A: PDB Molecule:kir3.1-prokaryotic kir channel chimera; PDBTitle: crystal structure of a kir3.1-prokaryotic kir channel chimera 89 d2pstx1 not modelled 6.2 20 Fold:MbtH/L9 domain-like Superfamily:MbtH-like Family:MbtH-like 90 c3nezA_ not modelled 6.2 16 PDB header:fluorescent protein Chain: A: PDB Molecule:mrojoa; PDBTitle: mrojoa 91 c3d3qB_ not modelled 6.0 12 PDB header:transferase Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis.3 northeast structural genomics consortium target ser100 92 c1y2iC_ not modelled 6.0 39 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein s0862; PDBTitle: crystal structure of mcsg target apc27401 from shigella2 flexneri 93 d1y2ia_ not modelled 6.0 39 Fold:Dodecin subunit-like Superfamily:YbjQ-like Family:YbjQ-like 94 d1ogmx1 not modelled 6.0 28 Fold:Dextranase, N-terminal domain Superfamily:Dextranase, N-terminal domain Family:Dextranase, N-terminal domain 95 c3akoG_ not modelled 6.0 24 PDB header:fluorescent protein Chain: G: PDB Molecule:venus; PDBTitle: crystal structure of the reassembled venus 96 c2yicC_ not modelled 5.7 12 PDB header:lyase Chain: C: PDB Molecule:2-oxoglutarate decarboxylase; PDBTitle: crystal structure of the suca domain of mycobacterium smegmatis2 alpha-ketoglutarate decarboxylase (triclinic form) 97 c2okrC_ not modelled 5.6 38 PDB header:transferase Chain: C: PDB Molecule:map kinase-activated protein kinase 2; PDBTitle: crystal structure of the p38a-mapkap kinase 2 heterodimer 98 c2okrF_ not modelled 5.6 38 PDB header:transferase Chain: F: PDB Molecule:map kinase-activated protein kinase 2; PDBTitle: crystal structure of the p38a-mapkap kinase 2 heterodimer 99 c3nb0A_ not modelled 5.5 19 PDB header:transferase Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2; PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0