Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP00509
DateThu Jan 5 10:56:40 GMT 2012
Unique Job IDef26111aac21be1a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2ay1a_
Top template information
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
Confidence and coverage
Confidence:100.0% Coverage: 99%
392 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE
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Disorder  ???????????









?????






























??
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   .........70.........80.........90.........100.........110.........120
Sequence  TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV
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Disorder  ?????




















??































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   .........130.........140.........150.........160.........170.........180
Sequence  KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC
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   .........190.........200.........210.........220.........230.........240
Sequence  CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV
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   .........250.........260.........270.........280.........290.........300
Sequence  ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN
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   .........310.........320.........330.........340.........350.........360
Sequence  DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR
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   .........370.........380.........390......
Sequence  LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL
Secondary structure 








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??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2ay1 chain A

3D model

Region: 1 - 395
Aligned: 392
Modelled: 395
Confidence: 100.0%
Identity: 45%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 7aat chain A

3D model

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 40%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 1ajs chain A

3D model

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 40%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3k7y chain A

3D model

Region: 1 - 396
Aligned: 394
Modelled: 396
Confidence: 100.0%
Identity: 32%
PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: aspartate aminotransferase of plasmodium falciparum

Phyre2

PDB 1yaa chain A

3D model

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 37%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3tat chain A

3D model

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 43%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 2cst chain A

3D model

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 39%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3meb chain B

3D model

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 36%
PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia

Phyre2

PDB 2q7w chain A domain 1

3D model

Region: 21 - 396
Aligned: 375
Modelled: 376
Confidence: 100.0%
Identity: 98%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3rq1 chain A

3D model

Region: 1 - 396
Aligned: 385
Modelled: 395
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula

Phyre2

PDB 2x5f chain B

3D model

Region: 1 - 396
Aligned: 385
Modelled: 396
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5'
PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase

Phyre2

PDB 3t18 chain D

3D model

Region: 3 - 396
Aligned: 381
Modelled: 394
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: D: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548.

Phyre2

PDB 3g0t chain A

3D model

Region: 3 - 396
Aligned: 375
Modelled: 382
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution

Phyre2

PDB 3ihj chain A

3D model

Region: 15 - 396
Aligned: 363
Modelled: 380
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:alanine aminotransferase 2;
PDBTitle: human alanine aminotransferase 2 in complex with plp

Phyre2

PDB 3e2y chain B

3D model

Region: 3 - 394
Aligned: 365
Modelled: 391
Confidence: 100.0%
Identity: 18%
PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine

Phyre2

PDB 3ppl chain B

3D model

Region: 17 - 396
Aligned: 357
Modelled: 366
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution

Phyre2

PDB 3if2 chain B

3D model

Region: 10 - 396
Aligned: 364
Modelled: 384
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution

Phyre2

PDB 1ynu chain A

3D model

Region: 5 - 396
Aligned: 369
Modelled: 392
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine

Phyre2

PDB 1m7y chain A

3D model

Region: 20 - 396
Aligned: 354
Modelled: 372
Confidence: 100.0%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2

PDB 1iay chain A

3D model

Region: 10 - 396
Aligned: 364
Modelled: 385
Confidence: 100.0%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
1

d2ay1a_
2

d7aata_
3

d1ajsa_
4

c3k7yA_
5

d1yaaa_
6

d3tata_
7

d2csta_
8

c3mebB_
9

d2q7wa1
10

c3rq1A_
11

c2x5fB_
12

c3t18D_
13

c3g0tA_
14

c3ihjA_
15

c3e2yB_
16

c3pplB_
17

c3if2B_
18

c1ynuA_
19

d1m7ya_
20

d1iaya_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2ay1a_



100.0 45 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
2d7aata_



100.0 40 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
3d1ajsa_



100.0 40 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
4c3k7yA_



100.0 32 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: aspartate aminotransferase of plasmodium falciparum
5d1yaaa_



100.0 37 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
6d3tata_



100.0 43 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
7d2csta_



100.0 39 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
8c3mebB_



100.0 36 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia
9d2q7wa1



100.0 98 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
10c3rq1A_



100.0 24 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula
11c2x5fB_



100.0 19 PDB header:transferase
Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5'
PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase
12c3t18D_



100.0 22 PDB header:transferase
Chain: D: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548.
13c3g0tA_



100.0 15 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
14c3ihjA_



100.0 14 PDB header:transferase
Chain: A: PDB Molecule:alanine aminotransferase 2;
PDBTitle: human alanine aminotransferase 2 in complex with plp
15c3e2yB_



100.0 18 PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
16c3pplB_



100.0 15 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution
17c3if2B_



100.0 20 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution
18c1ynuA_



100.0 17 PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
19d1m7ya_



100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
20d1iaya_



100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
21d1w7la_



not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
22c2zc0C_



not modelled 100.0 17 PDB header:transferase
Chain: C: PDB Molecule:alanine glyoxylate transaminase;
PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
23d2r5ea1



not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
24c3b46B_



not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
25c3ez1A_



not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase mocr family;
PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution
26c3qguB_



not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
27d1vp4a_



not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
28c3h14A_



not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
29d1u08a_



not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
30d1bw0a_



not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
31c3jtxB_



not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
32d1wsta1



not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
33d1o4sa_



not modelled 100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
34c3l8aB_



not modelled 100.0 14 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
35c3dzzB_



not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
36c3ezsB_



not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase aspb;
PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution
37c3eibB_



not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana
38d1xi9a_



not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
39c3d6kB_



not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:putative aminotransferase;
PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae
40c2o0rA_



not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
41d1x0ma1



not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
42c2zy3A_



not modelled 100.0 17 PDB header:lyase
Chain: A: PDB Molecule:l-aspartate beta-decarboxylase;
PDBTitle: dodecameric l-aspartate beta-decarboxylase
43c2o1bA_



not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class i;
PDBTitle: structure of aminotransferase from staphylococcus aureus
44c3eleB_



not modelled 100.0 20 PDB header:transferase
Chain: B: PDB Molecule:amino transferase;
PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution
45d1c7na_



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
46d1j32a_



not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
47d1gdea_



not modelled 100.0 21 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
48d1b5pa_



not modelled 100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
49c3nraA_



not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
50c2x5dD_



not modelled 100.0 18 PDB header:transferase
Chain: D: PDB Molecule:probable aminotransferase;
PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa
51d2gb3a1



not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
52c3kaxB_



not modelled 100.0 13 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
53c3asaA_



not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis
54c3dc1A_



not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase
PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
55c3f6tA_



not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution
56c2douA_



not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase;
PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8
57c3fdbA_



not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase;
PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution
58c3dydB_



not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:tyrosine aminotransferase;
PDBTitle: human tyrosine aminotransferase
59c3g7qA_



not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:valine-pyruvate aminotransferase;
PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution
60c3pdxA_



not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:tyrosine aminotransferase;
PDBTitle: crystal structural of mouse tyrosine aminotransferase
61d1v2da_



not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
62c1d2fB_



not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:maly protein;
PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
63d1d2fa_



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
64c2z61A_



not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:probable aspartate aminotransferase 2;
PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases
65c3ly1C_



not modelled 100.0 15 PDB header:transferase
Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
66c3cbfA_



not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:alpha-aminodipate aminotransferase;
PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
67c3op7A_



not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
68c3bwnF_



not modelled 100.0 15 PDB header:transferase
Chain: F: PDB Molecule:l-tryptophan aminotransferase;
PDBTitle: l-tryptophan aminotransferase
69d2f8ja1



not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
70c3eucB_



not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
71c3cq6E_



not modelled 100.0 15 PDB header:transferase
Chain: E: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound )
72c3getA_



not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
73d1fg7a_



not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
74d2hoxa1



not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
75d1lc5a_



not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
76c3hdoB_



not modelled 100.0 19 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
77c3ffhA_



not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262.
78c3p1tB_



not modelled 100.0 19 PDB header:transferase
Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution
79c3fkdC_



not modelled 100.0 19 PDB header:lyase
Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase;
PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis
80c3ftbA_



not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum
81d2aeua1



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SelA-like
82d1tpla_



not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
83d1svva_



not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
84c2dkjB_



not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
85d2e7ja1



not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
86d1v72a1



not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
87d1vjoa_



not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
88c3f0hA_



not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
89c3ffrA_



not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
90c3nnkC_



not modelled 100.0 14 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
91c3mafB_



not modelled 100.0 12 PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
92c3i4jC_



not modelled 100.0 13 PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans
93c2z9wA_



not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
94c2po3B_



not modelled 100.0 15 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
95d1c7ga_



not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
96c2eh6A_



not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5
97d1dfoa_



not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
98c3mc6C_



not modelled 100.0 12 PDB header:lyase
Chain: C: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of scdpl1
99d1eg5a_



not modelled 99.9 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
100c3hqtB_



not modelled 99.9 16 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
101d1m6sa_



not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
102d1b9ha_



not modelled 99.9 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
103c3islA_



not modelled 99.9 13 PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
104d1vefa1



not modelled 99.9 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
105d2cfba1



not modelled 99.9 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
106d1kl1a_



not modelled 99.9 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
107d2bwna1



not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
108c3nysA_



not modelled 99.9 13 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase wbpe;
PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
109c2x3lA_



not modelled 99.9 11 PDB header:lyase
Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein;
PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
110c3pj0D_



not modelled 99.9 12 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
111c2hdyA_



not modelled 99.9 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
112c3bcxA_



not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-
PDBTitle: e1 dehydrase
113c2huuA_



not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
114c3f9tB_



not modelled 99.9 13 PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
115d1qz9a_



not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
116c3a2bA_



not modelled 99.9 15 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
117c3caiA_



not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
118d2ch1a1



not modelled 99.9 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
119d1bs0a_



not modelled 99.9 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
120c2ordA_



not modelled 99.9 13 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0