Phyre 2 Results for P00509

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Email | l.a.kelley@imperial.ac.uk
Description | P00509
Date | Thu Jan 5 10:56:40 GMT 2012
Unique Job ID | ef26111aac21be1a

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2ay1a_
Top template information
Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
392 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | F | E | N | I | T | A | A | P | A | D | P | I | L | G | L | A | D | L | F | R | A | D | E | R | P | G | K | I | N | L | G | I | G | V | Y | K | D | E | T | G | K | T | P | V | L | T | S | V | K | K | A | E | Q | Y | L | L | E | N | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | T | T | K | N | Y | L | G | I | D | G | I | P | E | F | G | R | C | T | Q | E | L | L | F | G | K | G | S | A | L | I | N | D | K | R | A | R | T | A | Q | T | P | G | G | T | G | A | L | R | V | A | A | D | F | L | A | K | N | T | S | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | K | R | V | W | V | S | N | P | S | W | P | N | H | K | S | V | F | N | S | A | G | L | E | V | R | E | Y | A | Y | Y | D | A | E | N | H | T | L | D | F | D | A | L | I | N | S | L | N | E | A | Q | A | G | D | V | V | L | F | H | G | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | C | H | N | P | T | G | I | D | P | T | L | E | Q | W | Q | T | L | A | Q | L | S | V | E | K | G | W | L | P | L | F | D | F | A | Y | Q | G | F | A | R | G | L | E | E | D | A | E | G | L | R | A | F | A | A | M | H | K | E | L | I | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | A | S | S | Y | S | K | N | F | G | L | Y | N | E | R | V | G | A | C | T | L | V | A | A | D | S | E | T | V | D | R | A | F | S | Q | M | K | A | A | I | R | A | N | Y | S | N | P | P | A | H | G | A | S | V | V | A | T | I | L | S | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | D | A | L | R | A | I | W | E | Q | E | L | T | D | M | R | Q | R | I | Q | R | M | R | Q | L | F | V | N | T | L | Q | E | K | G | A | N | R | D | F | S | F | I | I | K | Q | N | G | M | F | S | F | S | G | L | T | K | E | Q | V | L | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | .
Sequence |  | L | R | E | E | F | G | V | Y | A | V | A | S | G | R | V | N | V | A | G | M | T | P | D | N | M | A | P | L | C | E | A | I | V | A | V | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2ay1a_ |

### PDB 2ay1 chain A

Region: 1 - 395
Aligned: 392
Modelled: 395
Confidence: 100.0%
Identity: 45%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2
2 |
| d7aata_ |

### PDB 7aat chain A

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 40%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2
3 |
| d1ajsa_ |

### PDB 1ajs chain A

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 40%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2
4 |
| c3k7yA_ |

### PDB 3k7y chain A

Region: 1 - 396
Aligned: 394
Modelled: 396
Confidence: 100.0%
Identity: 32%
PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: aspartate aminotransferase of plasmodium falciparum

Phyre2
5 |
| d1yaaa_ |

### PDB 1yaa chain A

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 37%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2
6 |
| d3tata_ |

### PDB 3tat chain A

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 43%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2
7 |
| d2csta_ |

### PDB 2cst chain A

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 39%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2
8 |
| c3mebB_ |

### PDB 3meb chain B

Region: 1 - 396
Aligned: 396
Modelled: 396
Confidence: 100.0%
Identity: 36%
PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia

Phyre2
9 |
| d2q7wa1 |

### PDB 2q7w chain A domain 1

Region: 21 - 396
Aligned: 375
Modelled: 376
Confidence: 100.0%
Identity: 98%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2
10 |
| c3rq1A_ |

### PDB 3rq1 chain A

Region: 1 - 396
Aligned: 385
Modelled: 395
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula

Phyre2
11 |
| c2x5fB_ |

### PDB 2x5f chain B

Region: 1 - 396
Aligned: 385
Modelled: 396
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5'
PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase

Phyre2
12 |
| c3t18D_ |

### PDB 3t18 chain D

Region: 3 - 396
Aligned: 381
Modelled: 394
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: D: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548.

Phyre2
13 |
| c3g0tA_ |

### PDB 3g0t chain A

Region: 3 - 396
Aligned: 375
Modelled: 382
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution

Phyre2
14 |
| c3ihjA_ |

### PDB 3ihj chain A

Region: 15 - 396
Aligned: 363
Modelled: 380
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:alanine aminotransferase 2;
PDBTitle: human alanine aminotransferase 2 in complex with plp

Phyre2
15 |
| c3e2yB_ |

### PDB 3e2y chain B

Region: 3 - 394
Aligned: 365
Modelled: 391
Confidence: 100.0%
Identity: 18%
PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine

Phyre2
16 |
| c3pplB_ |

### PDB 3ppl chain B

Region: 17 - 396
Aligned: 357
Modelled: 366
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution

Phyre2
17 |
| c3if2B_ |

### PDB 3if2 chain B

Region: 10 - 396
Aligned: 364
Modelled: 384
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution

Phyre2
18 |
| c1ynuA_ |

### PDB 1ynu chain A

Region: 5 - 396
Aligned: 369
Modelled: 392
Confidence: 100.0%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine

Phyre2
19 |
| d1m7ya_ |

### PDB 1m7y chain A

Region: 20 - 396
Aligned: 354
Modelled: 372
Confidence: 100.0%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
20 |
| d1iaya_ |

### PDB 1iay chain A

Region: 10 - 396
Aligned: 364
Modelled: 385
Confidence: 100.0%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2ay1a_ |
|  | 100.0 | 45 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
2 | d7aata_ |
|  | 100.0 | 40 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
3 | d1ajsa_ |
|  | 100.0 | 40 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
4 | c3k7yA_ |
|  | 100.0 | 32 | PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum
5 | d1yaaa_ |
|  | 100.0 | 37 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
6 | d3tata_ |
|  | 100.0 | 43 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
7 | d2csta_ |
|  | 100.0 | 39 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
8 | c3mebB_ |
|  | 100.0 | 36 | PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia
9 | d2q7wa1 |
|  | 100.0 | 98 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
10 | c3rq1A_ |
|  | 100.0 | 24 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula
11 | c2x5fB_ |
|  | 100.0 | 19 | PDB header:transferase Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase
12 | c3t18D_ |
|  | 100.0 | 22 | PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548.
13 | c3g0tA_ |
|  | 100.0 | 15 | PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
14 | c3ihjA_ |
|  | 100.0 | 14 | PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp
15 | c3e2yB_ |
|  | 100.0 | 18 | PDB header:transferase, lyase Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3; PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
16 | c3pplB_ |
|  | 100.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution
17 | c3if2B_ |
|  | 100.0 | 20 | PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution
18 | c1ynuA_ |
|  | 100.0 | 17 | PDB header:lyase Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase; PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
19 | d1m7ya_ |
|  | 100.0 | 17 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
20 | d1iaya_ |
|  | 100.0 | 17 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
21 | d1w7la_ |
| not modelled | 100.0 | 18 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
22 | c2zc0C_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: C: PDB Molecule:alanine glyoxylate transaminase; PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
23 | d2r5ea1 |
| not modelled | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
24 | c3b46B_ |
| not modelled | 100.0 | 18 | PDB header:transferase Chain: B: PDB Molecule:aminotransferase bna3; PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
25 | c3ez1A_ |
| not modelled | 100.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution
26 | c3qguB_ |
| not modelled | 100.0 | 16 | PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
27 | d1vp4a_ |
| not modelled | 100.0 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
28 | c3h14A_ |
| not modelled | 100.0 | 20 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
29 | d1u08a_ |
| not modelled | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
30 | d1bw0a_ |
| not modelled | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
31 | c3jtxB_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
32 | d1wsta1 |
| not modelled | 100.0 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
33 | d1o4sa_ |
| not modelled | 100.0 | 20 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
34 | c3l8aB_ |
| not modelled | 100.0 | 14 | PDB header:lyase Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase; PDBTitle: crystal structure of metc from streptococcus mutans
35 | c3dzzB_ |
| not modelled | 100.0 | 13 | PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
36 | c3ezsB_ |
| not modelled | 100.0 | 14 | PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution
37 | c3eibB_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana
38 | d1xi9a_ |
| not modelled | 100.0 | 19 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
39 | c3d6kB_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:putative aminotransferase; PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae
40 | c2o0rA_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
41 | d1x0ma1 |
| not modelled | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
42 | c2zy3A_ |
| not modelled | 100.0 | 17 | PDB header:lyase Chain: A: PDB Molecule:l-aspartate beta-decarboxylase; PDBTitle: dodecameric l-aspartate beta-decarboxylase
43 | c2o1bA_ |
| not modelled | 100.0 | 14 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class i; PDBTitle: structure of aminotransferase from staphylococcus aureus
44 | c3eleB_ |
| not modelled | 100.0 | 20 | PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution
45 | d1c7na_ |
| not modelled | 100.0 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
46 | d1j32a_ |
| not modelled | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
47 | d1gdea_ |
| not modelled | 100.0 | 21 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
48 | d1b5pa_ |
| not modelled | 100.0 | 20 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
49 | c3nraA_ |
| not modelled | 100.0 | 20 | PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
50 | c2x5dD_ |
| not modelled | 100.0 | 18 | PDB header:transferase Chain: D: PDB Molecule:probable aminotransferase; PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa
51 | d2gb3a1 |
| not modelled | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
52 | c3kaxB_ |
| not modelled | 100.0 | 13 | PDB header:lyase Chain: B: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
53 | c3asaA_ |
| not modelled | 100.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis
54 | c3dc1A_ |
| not modelled | 100.0 | 14 | PDB header:transferase Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
55 | c3f6tA_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution
56 | c2douA_ |
| not modelled | 100.0 | 19 | PDB header:transferase Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase; PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8
57 | c3fdbA_ |
| not modelled | 100.0 | 11 | PDB header:transferase Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase; PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution
58 | c3dydB_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:tyrosine aminotransferase; PDBTitle: human tyrosine aminotransferase
59 | c3g7qA_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution
60 | c3pdxA_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase
61 | d1v2da_ |
| not modelled | 100.0 | 19 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
62 | c1d2fB_ |
| not modelled | 100.0 | 14 | PDB header:transferase Chain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
63 | d1d2fa_ |
| not modelled | 100.0 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
64 | c2z61A_ |
| not modelled | 100.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:probable aspartate aminotransferase 2; PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases
65 | c3ly1C_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
66 | c3cbfA_ |
| not modelled | 100.0 | 21 | PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
67 | c3op7A_ |
| not modelled | 100.0 | 20 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
68 | c3bwnF_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: F: PDB Molecule:l-tryptophan aminotransferase; PDBTitle: l-tryptophan aminotransferase
69 | d2f8ja1 |
| not modelled | 100.0 | 18 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
70 | c3eucB_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2; PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
71 | c3cq6E_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: E: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound )
72 | c3getA_ |
| not modelled | 100.0 | 12 | PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
73 | d1fg7a_ |
| not modelled | 100.0 | 18 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
74 | d2hoxa1 |
| not modelled | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
75 | d1lc5a_ |
| not modelled | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
76 | c3hdoB_ |
| not modelled | 100.0 | 19 | PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
77 | c3ffhA_ |
| not modelled | 100.0 | 16 | PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262.
78 | c3p1tB_ |
| not modelled | 100.0 | 19 | PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution
79 | c3fkdC_ |
| not modelled | 100.0 | 19 | PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis
80 | c3ftbA_ |
| not modelled | 100.0 | 14 | PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum
81 | d2aeua1 |
| not modelled | 100.0 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SelA-like
82 | d1tpla_ |
| not modelled | 100.0 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases
83 | d1svva_ |
| not modelled | 100.0 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
84 | c2dkjB_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
85 | d2e7ja1 |
| not modelled | 100.0 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like
86 | d1v72a1 |
| not modelled | 100.0 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
87 | d1vjoa_ |
| not modelled | 100.0 | 18 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
88 | c3f0hA_ |
| not modelled | 100.0 | 12 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
89 | c3ffrA_ |
| not modelled | 100.0 | 13 | PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
90 | c3nnkC_ |
| not modelled | 100.0 | 14 | PDB header:transferase Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase; PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
91 | c3mafB_ |
| not modelled | 100.0 | 12 | PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form)
92 | c3i4jC_ |
| not modelled | 100.0 | 13 | PDB header:transferase Chain: C: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans
93 | c2z9wA_ |
| not modelled | 100.0 | 13 | PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
94 | c2po3B_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
95 | d1c7ga_ |
| not modelled | 100.0 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases
96 | c2eh6A_ |
| not modelled | 100.0 | 12 | PDB header:transferase Chain: A: PDB Molecule:acetylornithine aminotransferase; PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5
97 | d1dfoa_ |
| not modelled | 100.0 | 17 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
98 | c3mc6C_ |
| not modelled | 100.0 | 12 | PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1
99 | d1eg5a_ |
| not modelled | 99.9 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
100 | c3hqtB_ |
| not modelled | 99.9 | 16 | PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa
101 | d1m6sa_ |
| not modelled | 99.9 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
102 | d1b9ha_ |
| not modelled | 99.9 | 19 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
103 | c3islA_ |
| not modelled | 99.9 | 13 | PDB header:transferase Chain: A: PDB Molecule:purine catabolism protein pucg; PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
104 | d1vefa1 |
| not modelled | 99.9 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
105 | d2cfba1 |
| not modelled | 99.9 | 19 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
106 | d1kl1a_ |
| not modelled | 99.9 | 17 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
107 | d2bwna1 |
| not modelled | 99.9 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
108 | c3nysA_ |
| not modelled | 99.9 | 13 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase wbpe; PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
109 | c2x3lA_ |
| not modelled | 99.9 | 11 | PDB header:lyase Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein; PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
110 | c3pj0D_ |
| not modelled | 99.9 | 12 | PDB header:lyase Chain: D: PDB Molecule:lmo0305 protein; PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
111 | c2hdyA_ |
| not modelled | 99.9 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:selenocysteine lyase; PDBTitle: structure of human selenocysteine lyase
112 | c3bcxA_ |
| not modelled | 99.9 | 12 | PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase
113 | c2huuA_ |
| not modelled | 99.9 | 14 | PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
114 | c3f9tB_ |
| not modelled | 99.9 | 13 | PDB header:lyase Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna; PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
115 | d1qz9a_ |
| not modelled | 99.9 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
116 | c3a2bA_ |
| not modelled | 99.9 | 15 | PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
117 | c3caiA_ |
| not modelled | 99.9 | 14 | PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
118 | d2ch1a1 |
| not modelled | 99.9 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
119 | d1bs0a_ |
| not modelled | 99.9 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
120 | c2ordA_ |
| not modelled | 99.9 | 13 | PDB header:transferase Chain: A: PDB Molecule:acetylornithine aminotransferase; PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0