15/01/2012 19:02:53 : INFO  : Run start: Sun Jan 15 19:02:53 GMT 2012
15/01/2012 19:02:53 : INFO  : Initialised job
15/01/2012 19:02:53 : INFO  : Renaming log file 'phyre2_20120115_190253.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/phyre_20120115_190253.log'
15/01/2012 19:02:53 : INFO  : Initialised job:
Sequence
>batch____
MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE
TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSV
KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC
CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV
ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN
DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLR
LREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL

15/01/2012 19:02:53 : INFO  : Checked sequence
15/01/2012 19:02:53 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 19:02:53 : INFO  : PSI-BLAST 3 iterations
15/01/2012 19:05:09 : INFO  : PSI-BLAST 5 iterations
15/01/2012 19:09:01 : INFO  : Finished PSI-BLAST
15/01/2012 19:09:01 : INFO  : Running Buildali to generate a3m file
15/01/2012 19:27:09 : INFO  : Converting to HMM
15/01/2012 19:27:14 : INFO  : Calibrating HMM
15/01/2012 19:27:25 : INFO  : Searching HMM database
15/01/2012 19:34:45 : INFO  : Finished buildali
15/01/2012 19:34:45 : INFO  : Predicting secondary structure
15/01/2012 19:34:45 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 19:34:45 : INFO  : Predicting Disordered regions
15/01/2012 19:34:45 : INFO  : Predicted Disorder (Disopred)
15/01/2012 19:34:45 : INFO  : Running memsat_svm check
15/01/2012 19:36:22 : INFO  : Running memsat_svm full
15/01/2012 19:39:43 : INFO  : Predicted Transmembrane (memsat_svm) ID 'ef26111aac21be1a'
15/01/2012 19:39:43 : INFO  : Initialising fold library search
15/01/2012 19:39:43 : INFO  : Initialised search input
15/01/2012 19:39:43 : INFO  : Building Ensemble models
15/01/2012 19:39:43 : INFO  : Building hh.d2ay1a_.model.1.pdb
15/01/2012 19:39:44 : INFO  : Building hh.d7aata_.model.2.pdb
15/01/2012 19:39:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/hh.d7aata_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/d7aata_.2.pdb
15/01/2012 19:39:46 : INFO  : Building hh.d1ajsa_.model.3.pdb
15/01/2012 19:39:47 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/hh.d1ajsa_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/d1ajsa_.3.pdb
15/01/2012 19:39:47 : INFO  : Building hh.d1yaaa_.model.4.pdb
15/01/2012 19:39:48 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/hh.d1yaaa_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/d1yaaa_.5.pdb
15/01/2012 19:39:48 : INFO  : Building hh.d3tata_.model.5.pdb
15/01/2012 19:39:50 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/hh.d3tata_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/d3tata_.6.pdb
15/01/2012 19:39:51 : INFO  : Building hh.d2csta_.model.6.pdb
15/01/2012 19:39:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/hh.d2csta_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/ef26111aac21be1a/d2csta_.7.pdb
15/01/2012 19:39:51 : INFO  : Building d2ay1a_.1.pdb
15/01/2012 19:39:52 : INFO  : Building d7aata_.2.pdb
15/01/2012 19:39:52 : INFO  : Building d1ajsa_.3.pdb
15/01/2012 19:39:53 : INFO  : Building c3k7yA_.4.pdb
15/01/2012 19:39:53 : INFO  : Building d1yaaa_.5.pdb
15/01/2012 19:39:54 : INFO  : Building d3tata_.6.pdb
15/01/2012 19:39:56 : INFO  : Building d2csta_.7.pdb
15/01/2012 19:39:57 : INFO  : Building c3mebB_.8.pdb
15/01/2012 19:39:58 : INFO  : Building d2q7wa1.9.pdb
15/01/2012 19:39:59 : INFO  : Building c3rq1A_.10.pdb
15/01/2012 19:40:00 : INFO  : Building c2x5fB_.11.pdb
15/01/2012 19:40:01 : INFO  : Building c3t18D_.12.pdb
15/01/2012 19:40:02 : INFO  : Building c3g0tA_.13.pdb
15/01/2012 19:40:02 : INFO  : Building c3ihjA_.14.pdb
15/01/2012 19:40:03 : INFO  : Building c3e2yB_.15.pdb
15/01/2012 19:40:03 : INFO  : Building c3pplB_.16.pdb
15/01/2012 19:40:06 : INFO  : Building c3if2B_.17.pdb
15/01/2012 19:40:08 : INFO  : Building c1ynuA_.18.pdb
15/01/2012 19:40:08 : INFO  : Building d1m7ya_.19.pdb
15/01/2012 19:40:09 : INFO  : Building d1iaya_.20.pdb
15/01/2012 19:40:26 : INFO  : Finished HH model building
15/01/2012 19:40:26 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 19:40:35 : INFO  : html domain output complete ID 'ef26111aac21be1a'
15/01/2012 22:42:51 : INFO  : Run end  : Sun Jan 15 22:42:51 GMT 2012
