PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2x5dD_

Fold library id	PDB Header	Molecule	Title
c2x5dD_	PDB header: transferase	Chain: D: PDB Molecule: probable aminotransferase;	PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa

Links to external resources
Added to library: Sun Aug 29 00:55:24 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V F N I T A E L K M A A R R R G E D I I D L S M G N P D G P T P P H I V E K L C T V A Q R E D T H G Y S T S R G I P R L R R A I S H W Y R D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
S
S T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R Y D V Q I D P E S E A I V T I G S K E G L A H L M L A T L D H G D T I L V P N P S Y P I H I Y G A V I A G A Q V R S V P L V P G I D F F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S S S
T T
S
T T T
S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E L E R A I R E S I P K P R M M I L G F P S N P T A Q C V E L D F F E R V V A L A K Q Y D V M V V H D L A Y A D I V Y D G W K A P S I M Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
S
S S
T T T
T
T T T T
B
T T
G G G S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence P G A K D I A V E F F T L S K S Y N M A G W R I G F M V G N P E L V S A L A R I K S Y H D Y G T F T P L Q V A A I A A L E G D Q Q C V R D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G T S T T T T T
S
T T
S S S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A R Q Y Q Q R R D V L V K G L R E A G W M V E N P K A S M Y V W A K I P E P Y A H L G S L E F A K K L L Q D A K V S V S P G I G F G D Y G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S B S S
T T
G G G G
G G G T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380

Sequence D H V R F A L I E N R D R L R Q A V R G I K A M F R A D G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	F	N	I	T	A	E	L	K	M	A	A	R	R	R	G	E	D	I	I	D	L	S	M	G	N	P	D	G	P	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	E	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	H	W	Y	R	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T							S						S																S	T	T			S				T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	Y	D	V	Q	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	I	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	P	G	I	D	F	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	S					S	S															T	T								S			T									T	T									S	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	L	E	R	A	I	R	E	S	I	P	K	P	R	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	D	F	F	E	R	V	V	A	L	A	K	Q	Y	D	V	M	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S	S	S			S						S	S		T	T	T																				T								T	T	T	T		B		T	T						G	G	G	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	P	G	A	K	D	I	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	P	E	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	G	G	G	T							S	T	T	T	T	T			S																						T	T		S	S	S													S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	R	Q	Y	Q	Q	R	R	D	V	L	V	K	G	L	R	E	A	G	W	M	V	E	N	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	H	L	G	S	L	E	F	A	K	K	L	L	Q	D	A	K	V	S	V	S	P	G	I	G	F	G	D	Y	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T							S	B	S	S												T	T																				G	G	G	G		G	G	G	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Sequence	D	H	V	R	F	A	L	I	E	N	R	D	R	L	R	Q	A	V	R	G	I	K	A	M	F	R	A	D	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T								S																			T	T