PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2douA_

Fold library id	PDB Header	Molecule	Title
c2douA_	PDB header: transferase	Chain: A: PDB Molecule: probable n-succinyldiaminopimelate	PDBTitle: probable n-succinyldiaminopimelate aminotransferase2 (ttha0342) from thermus thermophilus hb8

Links to external resources
Added to library: Tue Mar 16 13:22:33 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V P E P S V F L V V D E A K R K A R E R G V G L I D L S I G S T D L P P P E A P L K A L A E A L N D P T T Y G Y C L K S C T L P F L E E A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S
T T
G G G S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R W Y E G R Y G V G L D P R R E A L A L I G S Q E G L A H L L L A L T E P E D L L L L P E V A Y P S Y F G A A R V A S L R T F L I P L R E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T S S S
T T
S S
T T
B
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G L A D L K A V P E G V W R E A K V L L L N Y P N N P T G A V A D W G Y F E E A L G L A R K H G L W L I H D N P Y V D Q V Y E G E A P S P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S B
G G G S
S S
T T T
T T
T T G G G B S S S
G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A L P G A K E R V V E L F S L S K S Y N L A G F R L G F A L G S E E A L A R L E R V K G V I D F N Q Y A G V L R M G V E A L K T P K E V V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G S T T G G G T T
G G G
S
T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G Y A R V Y R E R A L G M A E A L K G V L S L L P P R A T M Y L W G R L P E G V D D L E F G L R L V E R G V A L A P G R G F G P G G K G F V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
B S S
T T
T T
G G G G
G G G T T

. . . . . . . . . 360 . . . . . . . . . 370 . .

Sequence R I A L V R P L E E L L E A A K R I R E A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	P	E	P	S	V	F	L	V	V	D	E	A	K	R	K	A	R	E	R	G	V	G	L	I	D	L	S	I	G	S	T	D	L	P	P	P	E	A	P	L	K	A	L	A	E	A	L	N	D	P	T	T	Y	G	Y	C	L	K	S	C	T	L	P	F	L	E	E	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T																T	T							S	S																			T	T		G	G	G	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	W	Y	E	G	R	Y	G	V	G	L	D	P	R	R	E	A	L	A	L	I	G	S	Q	E	G	L	A	H	L	L	L	A	L	T	E	P	E	D	L	L	L	L	P	E	V	A	Y	P	S	Y	F	G	A	A	R	V	A	S	L	R	T	F	L	I	P	L	R	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S					T	T	T	S					S	S															T	T							S	S												T	T								B		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	L	A	D	L	K	A	V	P	E	G	V	W	R	E	A	K	V	L	L	L	N	Y	P	N	N	P	T	G	A	V	A	D	W	G	Y	F	E	E	A	L	G	L	A	R	K	H	G	L	W	L	I	H	D	N	P	Y	V	D	Q	V	Y	E	G	E	A	P	S	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	B		G	G	G	S															S	S		T	T	T																			T	T								T	T	G	G	G	B	S	S	S					G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	L	P	G	A	K	E	R	V	V	E	L	F	S	L	S	K	S	Y	N	L	A	G	F	R	L	G	F	A	L	G	S	E	E	A	L	A	R	L	E	R	V	K	G	V	I	D	F	N	Q	Y	A	G	V	L	R	M	G	V	E	A	L	K	T	P	K	E	V	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	S	T	T	G	G	G	T												T		G	G	G																										S													T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	Y	A	R	V	Y	R	E	R	A	L	G	M	A	E	A	L	K	G	V	L	S	L	L	P	P	R	A	T	M	Y	L	W	G	R	L	P	E	G	V	D	D	L	E	F	G	L	R	L	V	E	R	G	V	A	L	A	P	G	R	G	F	G	P	G	G	K	G	F	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	T	S							B	S	S								T	T													T	T						G	G	G	G		G	G	G	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Sequence	R	I	A	L	V	R	P	L	E	E	L	L	E	A	A	K	R	I	R	E	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S															T