PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1d2fB_

Fold library id	PDB Header	Molecule	Title
c1d2fB_	PDB header: transferase	Chain: B: PDB Molecule: maly protein;	PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-2 5'-phosphate-dependent enzyme acting as a modulator in mal3 gene expression

Links to external resources
Added to library: Tue Mar 16 12:17:00 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence F D F S K V V L L P F T I S D M D F A T A P C I I E A L N Q R L M H G V F G Y S R W K N D E F L A A I A H W F S T Q H Y T A I D S Q T V V Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S
S S
T T
S
S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G P S V I Y M V S E L I R Q W S E T G E G V V I H T P A Y D A F Y K A I E G N Q R T V M P V A L E K Q A D G W F C D M G K L E A V L A K P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T
S
T T T
T T
T S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence C K I M L L C S P Q N P T G K V W T C D E L E I M A D L C E R H G V R V I S D E I H M D M V W G E Q P H I P W S N V A R G D W A L L T S G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T T
T T
T T T T
B
S S S
G G G T
S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K S F N I P A L T G A Y G I I E N S S S R D A Y L S A L K G R D G L S S P S V L A L T A H I A A Y Q Q G A P W L D A L R I Y L K D N L T Y I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G
S T T S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A D K M N A A F P E L N W Q I P Q S T Y L A W L D L R P L N I D D N A L Q K A L I E Q E K V A I M P G Y T Y G E E G R G F V R L N A G C P R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S B
S
G G G
T T
G G G G
G G G T T
S

. . . . . . . . . 360 . . . . . . . .

Sequence S K L E K G V A G L I N A I R A V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	F	D	F	S	K	V	V	L	L	P	F	T	I	S	D	M	D	F	A	T	A	P	C	I	I	E	A	L	N	Q	R	L	M	H	G	V	F	G	Y	S	R	W	K	N	D	E	F	L	A	A	I	A	H	W	F	S	T	Q	H	Y	T	A	I	D	S	Q	T	V	V	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S								S	S	S		S	S															T	T								S																	S						G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	P	S	V	I	Y	M	V	S	E	L	I	R	Q	W	S	E	T	G	E	G	V	V	I	H	T	P	A	Y	D	A	F	Y	K	A	I	E	G	N	Q	R	T	V	M	P	V	A	L	E	K	Q	A	D	G	W	F	C	D	M	G	K	L	E	A	V	L	A	K	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S														S		T	T								S			T									T	T												T	T														T	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	C	K	I	M	L	L	C	S	P	Q	N	P	T	G	K	V	W	T	C	D	E	L	E	I	M	A	D	L	C	E	R	H	G	V	R	V	I	S	D	E	I	H	M	D	M	V	W	G	E	Q	P	H	I	P	W	S	N	V	A	R	G	D	W	A	L	L	T	S	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S		T	T	T																			T	T								T	T	T	T		B		S	S	S					G	G	G	T			S	S							S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	S	F	N	I	P	A	L	T	G	A	Y	G	I	I	E	N	S	S	S	R	D	A	Y	L	S	A	L	K	G	R	D	G	L	S	S	P	S	V	L	A	L	T	A	H	I	A	A	Y	Q	Q	G	A	P	W	L	D	A	L	R	I	Y	L	K	D	N	L	T	Y	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T		G	G	G									S													T	T	S				S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	D	K	M	N	A	A	F	P	E	L	N	W	Q	I	P	Q	S	T	Y	L	A	W	L	D	L	R	P	L	N	I	D	D	N	A	L	Q	K	A	L	I	E	Q	E	K	V	A	I	M	P	G	Y	T	Y	G	E	E	G	R	G	F	V	R	L	N	A	G	C	P	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T						S	B		S							G	G	G														T	T							G	G	G	G		G	G	G	T	T								S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Sequence	S	K	L	E	K	G	V	A	G	L	I	N	A	I	R	A	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)