Email l.a.kelley@imperial.ac.uk Description P77668 Date Thu Jan 5 12:31:30 GMT 2012 Unique Job ID e7cf5668190340d8

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2fug61 100.0 32 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like 2 d1frfs_ 99.9 20 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 3 d1wuis1 99.9 21 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 4 d1e3da_ 99.9 22 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 5 c1h2aS_ 99.9 21 PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 6 c3rgwS_ 99.9 17 PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster 7 d1yq9a1 99.9 18 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 8 c3myrE_ 99.9 21 PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 9 d1cc1s_ 99.9 28 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 10 c2wpnA_ 99.8 23 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 11 c2v4jA_ 63.5 14 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 12 d2dlda2 57.2 15 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 13 d1e5da1 53.5 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 14 c3rl4A_ 49.9 26 PDB header:hydrolase Chain: A: PDB Molecule:metallophosphoesterase mpped2; PDBTitle: rat metallophosphodiesterase mpped2 g252h mutant 15 c2d3yA_ 41.8 19 PDB header:hydrolase Chain: A: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8 16 c3aerC_ 38.6 18 PDB header:oxidoreductase Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark 17 c3trhI_ 36.7 24 PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii 18 d1sqsa_ 33.7 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein SP1951 19 d1vmea1 33.0 8 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 20 c1zvuA_ 32.7 16 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit 21 c2rf4B_ not modelled 31.8 29 PDB header:transferase Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa4; PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43 22 c3ca8B_ not modelled 30.0 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 23 c1xrsB_ not modelled 30.0 25 PDB header:isomerase Chain: B: PDB Molecule:d-lysine 5,6-aminomutase beta subunit; PDBTitle: crystal structure of lysine 5,6-aminomutase in complex with plp,2 cobalamin, and 5'-deoxyadenosine 24 c2q9uB_ not modelled 29.6 14 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 25 d2hkja2 not modelled 29.3 23 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 26 c1coyA_ not modelled 27.0 13 PDB header:oxidoreductase(oxygen receptor) Chain: A: PDB Molecule:cholesterol oxidase; PDBTitle: crystal structure of cholesterol oxidase complexed with a2 steroid substrate. implications for fad dependent alcohol3 oxidases 27 d2f2ab2 not modelled 24.1 31 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:GatB/GatE catalytic domain-like 28 d1nwba_ not modelled 22.3 16 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 29 c3ikbB_ not modelled 22.1 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159. 30 d2ac7a1 not modelled 21.4 20 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 31 c2z1dA_ not modelled 21.0 20 PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis 32 d2dlda1 not modelled 20.6 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 33 c2ax3A_ not modelled 19.9 20 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 34 c2gn0A_ not modelled 19.6 17 PDB header:lyase Chain: A: PDB Molecule:threonine dehydratase catabolic; PDBTitle: crystal structure of dimeric biodegradative threonine deaminase (tdcb)2 from salmonella typhimurium at 1.7 a resolution (triclinic form with3 one complete subunit built in alternate conformation) 35 c3d3kD_ not modelled 19.5 12 PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p 36 d1s98a_ not modelled 19.2 22 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 37 d1miob_ not modelled 18.8 11 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 38 d1m1la_ not modelled 18.3 20 Fold:Suppressor of Fused, N-terminal domain Superfamily:Suppressor of Fused, N-terminal domain Family:Suppressor of Fused, N-terminal domain 39 c2xdqA_ not modelled 18.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 40 c3bsfB_ not modelled 17.7 11 PDB header:hydrolase Chain: B: PDB Molecule:at4g34840; PDBTitle: crystal structure of the mta/sah nucleosidase 41 d2ax3a2 not modelled 17.5 20 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 42 c3na7A_ not modelled 17.5 12 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 43 d2yt9a2 not modelled 17.4 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 44 d1b3qa1 not modelled 17.2 19 Fold:ROP-like Superfamily:Homodimeric domain of signal transducing histidine kinase Family:Homodimeric domain of signal transducing histidine kinase 45 c2is8A_ not modelled 17.1 24 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 46 d1j4aa1 not modelled 17.0 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 47 c3nm5B_ not modelled 16.9 9 PDB header:hydrolase Chain: B: PDB Molecule:mta/sah nucleosidase; PDBTitle: helicobacter pylori mtan complexed with formycin a 48 c2dg2D_ not modelled 16.2 21 PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein 49 d1jysa_ not modelled 15.8 23 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 50 c2d1eA_ not modelled 15.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:phycocyanobilin:ferredoxin oxidoreductase; PDBTitle: crystal structure of pcya-biliverdin complex 51 d1j4aa2 not modelled 15.5 16 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 52 c2wzlA_ not modelled 15.2 30 PDB header:viral protein Chain: A: PDB Molecule:phosphoprotein; PDBTitle: the structure of the n-rna binding domain of the mokola2 virus phosphoprotein 53 d1pwha_ not modelled 15.1 21 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 54 d2h1qa1 not modelled 14.9 18 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 55 c1geaA_ not modelled 14.9 60 PDB header:neuropeptide Chain: A: PDB Molecule:pituitary adenylate cyclase activating PDBTitle: receptor-bound conformation of pacap21 56 c2k4zA_ not modelled 14.8 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsrr; PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5 57 c3bl6A_ not modelled 14.6 9 PDB header:hydrolase Chain: A: PDB Molecule:5'-methylthioadenosine nucleosidase/s- PDBTitle: crystal structure of staphylococcus aureus 5'-2 methylthioadenosine/s-adenosylhomocysteine nucleosidase in3 complex with formycin a 58 c2q2eB_ not modelled 14.6 31 PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of the topoisomerase vi holoenzyme from2 methanosarcina mazei 59 c3eeiA_ not modelled 14.5 11 PDB header:hydrolase Chain: A: PDB Molecule:5-methylthioadenosine nucleosidase/s- PDBTitle: crystal structure of 5'-methylthioadenosine/s-2 adenosylhomocysteine nucleosidase from neisseria3 meningitidis in complex with methylthio-immucillin-a 60 d1w85a_ not modelled 14.4 15 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module 61 c1zosE_ not modelled 14.4 14 PDB header:hydrolase Chain: E: PDB Molecule:5'-methylthioadenosine / s-adenosylhomocysteine PDBTitle: structure of 5'-methylthionadenosine/s-adenosylhomocysteine2 nucleosidase from s. pneumoniae with a transition-state3 inhibitor mt-imma 62 c3npgD_ not modelled 14.3 15 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized duf364 family protein; PDBTitle: crystal structure of a protein with unknown function from duf3642 family (ph1506) from pyrococcus horikoshii at 2.70 a resolution 63 c2g5iB_ not modelled 14.1 26 PDB header:ligase Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab2 complexed with adp-alf4 64 c1e5dA_ not modelled 14.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 65 d1xwdb1 not modelled 13.7 19 Fold:Cystine-knot cytokines Superfamily:Cystine-knot cytokines Family:Gonadodropin/Follitropin 66 c3pdiB_ not modelled 13.3 11 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 67 d1hcnb_ not modelled 13.3 25 Fold:Cystine-knot cytokines Superfamily:Cystine-knot cytokines Family:Gonadodropin/Follitropin 68 c1qfwB_ not modelled 13.1 25 PDB header:immune system Chain: B: PDB Molecule:gonadotrophin beta subunit; PDBTitle: ternary complex of human chorionic gonadotropin with fv anti alpha2 subunit and fv anti beta subunit 69 c2zbkB_ not modelled 12.9 19 PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms 70 c1vmeB_ not modelled 12.8 11 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 71 c1ychD_ not modelled 12.4 25 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 72 d1fyja_ not modelled 12.0 57 Fold:S15/NS1 RNA-binding domain Superfamily:S15/NS1 RNA-binding domain Family:a tRNA synthase domain 73 d1fmfa_ not modelled 12.0 18 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 74 c2rmzA_ not modelled 12.0 24 PDB header:cell adhesion Chain: A: PDB Molecule:integrin beta-3; PDBTitle: bicelle-embedded integrin beta3 transmembrane segment 75 d1vyia_ not modelled 11.9 30 Fold:Phosphoprotein M1, C-terminal domain Superfamily:Phosphoprotein M1, C-terminal domain Family:Phosphoprotein M1, C-terminal domain 76 c3k1yE_ not modelled 11.8 9 PDB header:oxidoreductase Chain: E: PDB Molecule:oxidoreductase; PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d 77 c3dp9A_ not modelled 11.7 14 PDB header:hydrolase Chain: A: PDB Molecule:mta/sah nucleosidase; PDBTitle: crystal structure of vibrio cholerae 5'-methylthioadenosine/s-adenosyl2 homocysteine nucleosidase (mtan) complexed with butylthio-dadme-3 immucillin a 78 d1sc6a1 not modelled 11.4 5 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 79 c3tl6B_ not modelled 11.4 14 PDB header:transferase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica 80 c3oa1B_ not modelled 11.2 26 PDB header:chaperone Chain: B: PDB Molecule:phosphoprotein; PDBTitle: crystal structure of phosphoprotein/protein p/protein m1 residues 69-2 297 from rabies virus reveals degradation to c-terminal domain only 81 d1th5a1 not modelled 11.0 14 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 82 d1umda_ not modelled 10.9 8 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module 83 d2bfda1 not modelled 10.8 11 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Branched-chain alpha-keto acid dehydrogenase PP module 84 d3cxeb1 not modelled 10.8 83 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 85 d2b0ja2 not modelled 10.6 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 86 c2d2aA_ not modelled 10.6 21 PDB header:metal transport Chain: A: PDB Molecule:sufa protein; PDBTitle: crystal structure of escherichia coli sufa involved in2 biosynthesis of iron-sulfur clusters 87 c3klbA_ not modelled 10.5 18 PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution 88 c1z34A_ not modelled 10.5 23 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of trichomonas vaginalis purine nucleoside2 phosphorylase complexed with 2-fluoro-2'-deoxyadenosine 89 c3pdiG_ not modelled 10.4 18 PDB header:protein binding Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife; PDBTitle: precursor bound nifen 90 d1k9sa_ not modelled 10.2 14 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 91 c3rfqC_ not modelled 10.2 24 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 92 c2apnA_ not modelled 10.1 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein hi1723; PDBTitle: hi1723 solution structure 93 c2dmlA_ not modelled 10.0 26 PDB header:isomerase Chain: A: PDB Molecule:protein disulfide-isomerase a6; PDBTitle: the solution structure of the first thioredoxin domain of2 mouse protein disulfide-isomerase a6 94 c3c7bA_ not modelled 9.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 95 c3h0mE_ not modelled 9.8 23 PDB header:ligase Chain: E: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus 96 d2fug71 not modelled 9.8 71 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Nqo15-like 97 c2o2kA_ not modelled 9.7 23 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n 98 c1vddC_ not modelled 9.6 33 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 99 d1r0ka3 not modelled 9.6 33 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like