Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	K	I	F	S	S	H	V	M	P	F	R	A	L	I	D	A	C	W	K	E	K	Y	T	A	A	R	F	T	R	D	L	I	A	G	I	T	V	G	I	I	A	I	P	L	A	M	A	L	A	I	G	S	G	V	A	P	Q	Y
Secondary structure
SS confidence
Disorder		?	?	?	?																																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	L	Y	T	A	A	V	A	G	I	V	I	A	L	T	G	G	S	R	F	S	V	S	G	P	T	A	A	F	V	V	I	L	Y	P	V	S	Q	Q	F	G	L	A	G	L	L	V	A	T	L	L	S	G	I	F	L	I	L	M	G
Secondary structure
SS confidence
Disorder																			?		?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	A	R	F	G	R	L	I	E	Y	I	P	V	S	V	T	L	G	F	T	S	G	I	G	I	T	I	G	T	M	Q	I	K	D	F	L	G	L	Q	M	A	H	V	P	E	H	Y	L	Q	K	V	G	A	L	F	M	A	L	P	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	N	V	G	D	A	A	I	G	I	V	T	L	G	I	L	V	F	W	P	R	L	G	I	R	L	P	G	H	L	P	A	L	L	A	G	C	A	V	M	G	I	V	N	L	L	G	G	H	V	A	T	I	G	S	Q	F	H	Y	V
Secondary structure
SS confidence
Disorder																																																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	A	D	G	S	Q	G	N	G	I	P	Q	L	L	P	Q	L	V	L	P	W	D	L	P	N	S	E	F	T	L	T	W	D	S	I	R	T	L	L	P	A	A	F	S	M	A	M	L	G	A	I	E	S	L	L	C	A	V	V	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?			?	?					?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	G	M	T	G	T	K	H	K	A	N	S	E	L	V	G	Q	G	L	G	N	I	I	A	P	F	F	G	G	I	T	A	T	A	A	I	A	R	S	A	A	N	V	R	A	G	A	T	S	P	I	S	A	V	I	H	S	I	L	V
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?																								?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	L	A	L	L	V	L	A	P	L	L	S	W	L	P	L	S	A	M	A	A	L	L	L	M	V	A	W	N	M	S	E	A	H	K	V	V	D	L	L	R	H	A	P	K	D	D	I	I	V	M	L	L	C	M	S	L	T	V	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		F	D	M	V	I	A	I	S	V	G	I	V	L	A	S	L	L	F	M	R	R	I	A	R	M	T	R	L	A	P	V	V	V	D	V	P	D	D	V	L	V	L	R	V	I	G	P	L	F	F	A	A	A	E	G	L	F	T	D	L
Secondary structure
SS confidence
Disorder																									?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		E	S	R	L	E	G	K	R	I	V	I	L	K	W	D	A	V	P	V	L	D	A	G	G	L	D	A	F	Q	R	F	V	K	R	L	P	E	G	C	E	L	R	V	C	N	V	E	F	Q	P	L	R	T	M	A	R	A	G	I	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Sequence		P	I	P	G	R	L	A	F	F	P	N	R	R	A	A	M	A	D	L
Secondary structure
SS confidence
Disorder																		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3qe7 chain A Region: 25 - 437 Aligned: 377 Modelled: 377 Confidence: 100.0% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa Phyre2 PDB 3ny7 chain A Region: 443 - 559 Aligned: 117 Modelled: 117 Confidence: 99.9% Identity: 98% PDB header:membrane protein Chain: A: PDB Molecule:sulfate transporter; PDBTitle: stas domain of ychm bound to acp Phyre2 PDB 3llo chain A Region: 449 - 559 Aligned: 105 Modelled: 111 Confidence: 99.9% Identity: 17% PDB header:motor protein Chain: A: PDB Molecule:prestin; PDBTitle: crystal structure of the stas domain of motor protein prestin (anion2 transporter slc26a5) Phyre2 PDB 3mgl chain A Region: 449 - 558 Aligned: 110 Modelled: 110 Confidence: 99.9% Identity: 24% PDB header:transport protein Chain: A: PDB Molecule:sulfate permease family protein; PDBTitle: crystal structure of permease family protein from vibrio2 cholerae Phyre2 PDB 3oir chain A Region: 451 - 558 Aligned: 108 Modelled: 108 Confidence: 99.9% Identity: 28% PDB header:transport protein Chain: A: PDB Molecule:sulfate transporter sulfate transporter family protein; PDBTitle: crystal structure of sulfate transporter family protein from wolinella2 succinogenes Phyre2 PDB 2kln chain A Region: 449 - 559 Aligned: 111 Modelled: 111 Confidence: 99.8% Identity: 20% PDB header:transport protein Chain: A: PDB Molecule:probable sulphate-transport transmembrane protein, cog0659; PDBTitle: solution structure of stas domain of rv1739c from m. tuberculosis Phyre2 PDB 1auz chain A Region: 452 - 559 Aligned: 105 Modelled: 108 Confidence: 99.7% Identity: 26% Fold: SpoIIaa-like Superfamily: SpoIIaa-like Family: Anti-sigma factor antagonist SpoIIaa Phyre2 PDB 1th8 chain B Region: 452 - 559 Aligned: 105 Modelled: 108 Confidence: 99.7% Identity: 25% Fold: SpoIIaa-like Superfamily: SpoIIaa-like Family: Anti-sigma factor antagonist SpoIIaa Phyre2 PDB 3f43 chain A Region: 453 - 559 Aligned: 104 Modelled: 105 Confidence: 99.6% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:putative anti-sigma factor antagonist tm1081; PDBTitle: crystal structure of a putative anti-sigma factor antagonist (tm1081)2 from thermotoga maritima at 1.59 a resolution Phyre2 PDB 3lkl chain B Region: 457 - 536 Aligned: 79 Modelled: 80 Confidence: 99.6% Identity: 20% PDB header:transport protein Chain: B: PDB Molecule:antisigma-factor antagonist stas; PDBTitle: crystal structure of the c-terminal domain of anti-sigma factor2 antagonist stas from rhodobacter sphaeroides Phyre2 PDB 2vy9 chain A Region: 457 - 559 Aligned: 101 Modelled: 103 Confidence: 99.6% Identity: 14% PDB header:gene regulation Chain: A: PDB Molecule:anti-sigma-factor antagonist; PDBTitle: molecular architecture of the stressosome, a signal2 integration and transduction hub Phyre2 PDB 1vc1 chain A Region: 450 - 555 Aligned: 103 Modelled: 106 Confidence: 99.5% Identity: 18% Fold: SpoIIaa-like Superfamily: SpoIIaa-like Family: Anti-sigma factor antagonist SpoIIaa Phyre2 PDB 3t6o chain A Region: 450 - 559 Aligned: 107 Modelled: 109 Confidence: 99.4% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:sulfate transporter/antisigma-factor antagonist stas; PDBTitle: the structure of an anti-sigma-factor antagonist (stas) domain protein2 from planctomyces limnophilus. Phyre2 PDB 1h4x chain A Region: 457 - 559 Aligned: 98 Modelled: 103 Confidence: 99.3% Identity: 14% Fold: SpoIIaa-like Superfamily: SpoIIaa-like Family: Anti-sigma factor antagonist SpoIIaa Phyre2 PDB 3ih9 chain A Region: 439 - 527 Aligned: 89 Modelled: 89 Confidence: 95.9% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:salt-tolerant glutaminase; PDBTitle: crystal structure analysis of mglu in its tris form Phyre2 PDB 3bez chain C Region: 457 - 522 Aligned: 66 Modelled: 66 Confidence: 74.2% Identity: 11% PDB header:hydrolase Chain: C: PDB Molecule:protease 4; PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals Phyre2 PDB 2nu7 chain B domain 1 Region: 471 - 559 Aligned: 83 Modelled: 89 Confidence: 72.1% Identity: 12% Fold: Flavodoxin-like Superfamily: Succinyl-CoA synthetase domains Family: Succinyl-CoA synthetase domains Phyre2 PDB 1mvo chain A Region: 470 - 559 Aligned: 85 Modelled: 88 Confidence: 70.8% Identity: 13% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 2dfw chain A Region: 439 - 489 Aligned: 51 Modelled: 49 Confidence: 69.4% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:salt-tolerant glutaminase; PDBTitle: crystal structure of a major fragment of the salt-tolerant2 glutaminase from micrococcus luteus k-3 Phyre2 PDB 3b2n chain A Region: 470 - 559 Aligned: 85 Modelled: 90 Confidence: 68.6% Identity: 8% PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus Phyre2 1 c3qe7A_ 2 c3ny7A_ 3 c3lloA_ 4 c3mglA_ 5 c3oirA_ 6 c2klnA_ 7 d1auza_ 8 d1th8b_ 9 c3f43A_ 10 c3lklB_ 11 c2vy9A_ 12 d1vc1a_ 13 c3t6oA_ 14 d1h4xa_ 15 c3ih9A_ 16 c3bezC_ 17 d2nu7b1 18 d1mvoa_ 19 c2dfwA_ 20 c3b2nA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3qe7A_ 100.0 16 PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa 2 c3ny7A_ 99.9 98 PDB header:membrane protein Chain: A: PDB Molecule:sulfate transporter; PDBTitle: stas domain of ychm bound to acp 3 c3lloA_ 99.9 17 PDB header:motor protein Chain: A: PDB Molecule:prestin; PDBTitle: crystal structure of the stas domain of motor protein prestin (anion2 transporter slc26a5) 4 c3mglA_ 99.9 24 PDB header:transport protein Chain: A: PDB Molecule:sulfate permease family protein; PDBTitle: crystal structure of permease family protein from vibrio2 cholerae 5 c3oirA_ 99.9 28 PDB header:transport protein Chain: A: PDB Molecule:sulfate transporter sulfate transporter family protein; PDBTitle: crystal structure of sulfate transporter family protein from wolinella2 succinogenes 6 c2klnA_ 99.8 20 PDB header:transport protein Chain: A: PDB Molecule:probable sulphate-transport transmembrane protein, cog0659; PDBTitle: solution structure of stas domain of rv1739c from m. tuberculosis 7 d1auza_ 99.7 26 Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Anti-sigma factor antagonist SpoIIaa 8 d1th8b_ 99.7 25 Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Anti-sigma factor antagonist SpoIIaa 9 c3f43A_ 99.6 16 PDB header:transcription Chain: A: PDB Molecule:putative anti-sigma factor antagonist tm1081; PDBTitle: crystal structure of a putative anti-sigma factor antagonist (tm1081)2 from thermotoga maritima at 1.59 a resolution 10 c3lklB_ 99.6 20 PDB header:transport protein Chain: B: PDB Molecule:antisigma-factor antagonist stas; PDBTitle: crystal structure of the c-terminal domain of anti-sigma factor2 antagonist stas from rhodobacter sphaeroides 11 c2vy9A_ 99.6 14 PDB header:gene regulation Chain: A: PDB Molecule:anti-sigma-factor antagonist; PDBTitle: molecular architecture of the stressosome, a signal2 integration and transduction hub 12 d1vc1a_ 99.5 18 Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Anti-sigma factor antagonist SpoIIaa 13 c3t6oA_ 99.4 14 PDB header:transport protein Chain: A: PDB Molecule:sulfate transporter/antisigma-factor antagonist stas; PDBTitle: the structure of an anti-sigma-factor antagonist (stas) domain protein2 from planctomyces limnophilus. 14 d1h4xa_ 99.3 14 Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Anti-sigma factor antagonist SpoIIaa 15 c3ih9A_ 95.9 26 PDB header:hydrolase Chain: A: PDB Molecule:salt-tolerant glutaminase; PDBTitle: crystal structure analysis of mglu in its tris form 16 c3bezC_ 74.2 11 PDB header:hydrolase Chain: C: PDB Molecule:protease 4; PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals 17 d2nu7b1 72.1 12 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 18 d1mvoa_ 70.8 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 19 c2dfwA_ 69.4 18 PDB header:hydrolase Chain: A: PDB Molecule:salt-tolerant glutaminase; PDBTitle: crystal structure of a major fragment of the salt-tolerant2 glutaminase from micrococcus luteus k-3 20 c3b2nA_ 68.6 8 PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus 21 c3bl4B_ not modelled 66.7 17 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function (arth_0117) from2 arthrobacter sp. fb24 at 2.20 a resolution 22 d1l7vc_ not modelled 60.1 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 23 c1yqtA_ not modelled 57.4 18 PDB header:hydrolyase/translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: rnase-l inhibitor 24 d2hyda1 not modelled 55.6 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 25 c3jteA_ not modelled 55.2 9 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 26 d1dz3a_ not modelled 48.3 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 27 d2q3la1 not modelled 48.0 15 Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Sfri0576-like 28 c3gfzB_ not modelled 46.4 12 PDB header:hydrolase, signaling protein Chain: B: PDB Molecule:klebsiella pneumoniae blrp1; PDBTitle: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex 29 c2qy6A_ not modelled 45.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 30 c2pr7A_ not modelled 45.1 9 PDB header:hydrolase Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family; PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution 31 c2deoA_ not modelled 43.6 10 PDB header:hydrolase Chain: A: PDB Molecule:441aa long hypothetical nfed protein; PDBTitle: 1510-n membrane protease specific for a stomatin homolog from2 pyrococcus horikoshii 32 c3hv9A_ not modelled 43.3 16 PDB header:hydrolase Chain: A: PDB Molecule:protein fimx; PDBTitle: crystal structure of fimx eal domain from pseudomonas aeruginosa 33 c2zwmA_ not modelled 42.9 11 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 34 d1a04a2 not modelled 41.0 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 35 d1tg6a1 not modelled 40.7 13 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 36 c3hvbB_ not modelled 38.9 15 PDB header:hydrolase Chain: B: PDB Molecule:protein fimx; PDBTitle: crystal structure of the dual-domain ggdef-eal module of2 fimx from pseudomonas aeruginosa 37 d1pf4a1 not modelled 37.9 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 38 c3ozxA_ not modelled 36.9 13 PDB header:hydrolase, translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain) 39 c2yz2B_ not modelled 36.7 19 PDB header:hydrolase Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222; PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system 40 d1ys7a2 not modelled 36.0 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 41 c3i42A_ not modelled 35.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 42 c3eulB_ not modelled 34.0 9 PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis 43 c2qv0A_ not modelled 33.8 7 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 44 d2awna2 not modelled 33.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 45 d1ji0a_ not modelled 33.2 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 46 d1u0sy_ not modelled 32.9 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 47 c2q3eH_ not modelled 32.6 14 PDB header:oxidoreductase Chain: H: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: structure of human udp-glucose dehydrogenase complexed with nadh and2 udp-glucose 48 d2csua3 not modelled 31.9 15 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 49 c3cz5B_ not modelled 31.7 13 PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1 50 d1b0ua_ not modelled 30.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 51 c3nhaA_ not modelled 30.2 18 PDB header:transport protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 6, mitochondrial; PDBTitle: nucleotide binding domain of human abcb6 (adp mg bound structure) 52 c2r6fA_ not modelled 29.0 19 PDB header:hydrolase Chain: A: PDB Molecule:excinuclease abc subunit a; PDBTitle: crystal structure of bacillus stearothermophilus uvra 53 c2it1B_ not modelled 29.0 17 PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii 54 d1jbea_ not modelled 28.4 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 55 c3nhzA_ not modelled 28.2 11 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 56 c3dcmX_ not modelled 27.9 2 PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine 57 c2pcjB_ not modelled 27.8 8 PDB header:hydrolase Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold; PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5 58 d1mv5a_ not modelled 27.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 59 d1peya_ not modelled 25.2 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 60 d1krwa_ not modelled 25.2 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 61 d1s8na_ not modelled 25.1 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 62 d1g6ha_ not modelled 23.9 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 63 c2r6oB_ not modelled 23.6 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative diguanylate cyclase/phosphodiesterase (ggdef & eal PDBTitle: crystal structure of putative diguanylate cyclase/phosphodiesterase2 from thiobacillus denitrificans 64 c3hdgE_ not modelled 23.5 13 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 65 c3kthD_ not modelled 22.8 8 PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of clpp from bacillus subtilis in orthorombic crystal form 66 c2nq2C_ not modelled 22.2 10 PDB header:metal transport Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter. 67 d2cbya1 not modelled 22.0 9 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit 68 d1xhfa1 not modelled 22.0 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 69 c2csuB_ not modelled 21.7 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 70 c3hn7A_ not modelled 21.3 10 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution 71 c1vciA_ not modelled 21.0 13 PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp 72 d2iw0a1 not modelled 21.0 17 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 73 c3g5uB_ not modelled 20.9 13 PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding 74 d1jj7a_ not modelled 20.8 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 75 c1eucB_ not modelled 20.7 6 PDB header:ligase Chain: B: PDB Molecule:succinyl-coa synthetase, beta chain; PDBTitle: crystal structure of dephosphorylated pig heart, gtp-2 specific succinyl-coa synthetase 76 c3llmB_ not modelled 19.8 14 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase 77 d2ayxa1 not modelled 19.7 10 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 78 c1e1cA_ not modelled 19.6 19 PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant 79 d1zesa1 not modelled 19.2 9 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 80 c1tg6G_ not modelled 19.2 13 PDB header:hydrolase Chain: G: PDB Molecule:putative atp-dependent clp protease proteolytic subunit; PDBTitle: crystallography and mutagenesis point to an essential role for the n-2 terminus of human mitochondrial clpp 81 c3lpzA_ not modelled 19.1 29 PDB header:protein transport Chain: A: PDB Molecule:get4 (yor164c homolog); PDBTitle: crystal structure of c. therm. get4 82 c2rjnA_ not modelled 19.0 13 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 83 c3a0rB_ not modelled 18.8 12 PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) 84 c3nvbA_ not modelled 18.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate 85 c2cbyG_ not modelled 17.7 9 PDB header:hydrolase Chain: G: PDB Molecule:atp-dependent clp protease proteolytic subunit 1; PDBTitle: crystal structure of the atp-dependent clp protease2 proteolytic subunit 1 (clpp1) from mycobacterium3 tuberculosis 86 c2zayA_ not modelled 17.2 9 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 87 c3pihA_ not modelled 16.9 19 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 88 d2basa1 not modelled 16.4 17 Fold:TIM beta/alpha-barrel Superfamily:EAL domain-like Family:EAL domain 89 c1wazA_ not modelled 16.1 28 PDB header:transport protein Chain: A: PDB Molecule:merf; PDBTitle: nmr structure determination of the bacterial mercury2 transporter, merf, in micelles 90 c1oxtB_ not modelled 16.0 19 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus 91 c3s83A_ not modelled 16.0 17 PDB header:signaling protein Chain: A: PDB Molecule:ggdef family protein; PDBTitle: crystal structure of eal domain from caulobacter crescentus cb15 92 c3u5cH_ not modelled 15.8 4 PDB header:ribosome Chain: H: PDB Molecule:40s ribosomal protein s7-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 93 d1jb0i_ not modelled 15.7 19 Fold:Single transmembrane helix Superfamily:Subunit VIII of photosystem I reaction centre, PsaI Family:Subunit VIII of photosystem I reaction centre, PsaI 94 c2d2fA_ not modelled 15.5 15 PDB header:protein binding Chain: A: PDB Molecule:sufc protein; PDBTitle: crystal structure of atypical cytoplasmic abc-atpase sufc from thermus2 thermophilus hb8 95 c2nu9E_ not modelled 15.4 12 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 96 c2hx1D_ not modelled 15.3 15 PDB header:hydrolase Chain: D: PDB Molecule:predicted sugar phosphatases of the had PDBTitle: crystal structure of possible sugar phosphatase, had2 superfamily (zp_00311070.1) from cytophaga hutchinsonii3 atcc 33406 at 2.10 a resolution 97 c2pzfB_ not modelled 15.3 10 PDB header:hydrolase Chain: B: PDB Molecule:cystic fibrosis transmembrane conductance regulator; PDBTitle: minimal human cftr first nucleotide binding domain as a head-to-tail2 dimer with delta f508 98 d1heya_ not modelled 14.9 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 99 d1yg6a1 not modelled 14.9 8 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0