16/01/2012 07:49:21 : INFO  : Run start: Mon Jan 16 07:49:19 GMT 2012
16/01/2012 07:49:29 : INFO  : Initialised job
16/01/2012 07:49:31 : INFO  : Renaming log file 'phyre2_20120116_074918.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/db9cf24852b95d1c/phyre_20120116_074918.log'
16/01/2012 07:49:34 : INFO  : Initialised job:
Sequence
>batch____
MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIGSGVAPQY
GLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLLSGIFLILMG
LARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYLQKVGALFMALPT
INVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCAVMGIVNLLGGHVATIGSQFHYV
LADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIRTLLPAAFSMAMLGAIESLLCAVVL
DGMTGTKHKANSELVGQGLGNIIAPFFGGITATAAIARSAANVRAGATSPISAVIHSILV
ILALLVLAPLLSWLPLSAMAALLLMVAWNMSEAHKVVDLLRHAPKDDIIVMLLCMSLTVL
FDMVIAISVGIVLASLLFMRRIARMTRLAPVVVDVPDDVLVLRVIGPLFFAAAEGLFTDL
ESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPEGCELRVCNVEFQPLRTMARAGIQ
PIPGRLAFFPNRRAAMADL

16/01/2012 07:49:35 : INFO  : Checked sequence
16/01/2012 07:49:40 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 07:49:42 : INFO  : PSI-BLAST 3 iterations
16/01/2012 07:53:20 : INFO  : PSI-BLAST 5 iterations
16/01/2012 07:56:55 : INFO  : Finished PSI-BLAST
16/01/2012 07:57:01 : INFO  : Running Buildali to generate a3m file
16/01/2012 08:17:24 : INFO  : Converting to HMM
16/01/2012 08:17:35 : INFO  : Calibrating HMM
16/01/2012 08:18:02 : INFO  : Searching HMM database
16/01/2012 08:27:51 : INFO  : Finished buildali
16/01/2012 08:27:54 : INFO  : Predicting secondary structure
16/01/2012 08:28:08 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 08:28:12 : INFO  : Predicting Disordered regions
16/01/2012 08:28:20 : INFO  : Predicted Disorder (Disopred)
16/01/2012 08:28:23 : INFO  : Running memsat_svm check
16/01/2012 08:37:47 : INFO  : Globular protein
16/01/2012 08:37:49 : INFO  : Predicted Transmembrane (memsat_svm) ID 'db9cf24852b95d1c'
16/01/2012 08:37:52 : INFO  : Initialising fold library search
16/01/2012 08:37:59 : INFO  : Initialised search input
16/01/2012 08:38:04 : INFO  : Building Ensemble models
16/01/2012 08:38:10 : INFO  : Building hh.c3qe7A_.model.1.pdb
16/01/2012 08:38:41 : INFO  : Building hh.c3ny7A_.model.2.pdb
16/01/2012 08:39:05 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/db9cf24852b95d1c/hh.c3ny7A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/db9cf24852b95d1c/c3ny7A_.2.pdb
16/01/2012 08:39:15 : INFO  : Building c3qe7A_.1.pdb
16/01/2012 08:39:43 : INFO  : Building c3ny7A_.2.pdb
16/01/2012 08:40:11 : INFO  : Building c3lloA_.3.pdb
16/01/2012 08:40:38 : INFO  : Building c3mglA_.4.pdb
16/01/2012 08:41:07 : INFO  : Building c3oirA_.5.pdb
16/01/2012 08:41:34 : INFO  : Building c2klnA_.6.pdb
16/01/2012 08:42:02 : INFO  : Building d1auza_.7.pdb
16/01/2012 08:42:29 : INFO  : Building d1th8b_.8.pdb
16/01/2012 08:42:57 : INFO  : Building c3f43A_.9.pdb
16/01/2012 08:43:25 : INFO  : Building c3lklB_.10.pdb
16/01/2012 08:43:54 : INFO  : Building c2vy9A_.11.pdb
16/01/2012 08:44:21 : INFO  : Building d1vc1a_.12.pdb
16/01/2012 08:44:50 : INFO  : Building c3t6oA_.13.pdb
16/01/2012 08:45:20 : INFO  : Building d1h4xa_.14.pdb
16/01/2012 08:45:50 : INFO  : Building c3ih9A_.15.pdb
16/01/2012 08:46:19 : INFO  : Building c3bezC_.16.pdb
16/01/2012 08:46:46 : INFO  : Building d2nu7b1.17.pdb
16/01/2012 08:47:14 : INFO  : Building d1mvoa_.18.pdb
16/01/2012 08:47:42 : INFO  : Building c2dfwA_.19.pdb
16/01/2012 08:48:11 : INFO  : Building c3b2nA_.20.pdb
16/01/2012 08:49:38 : INFO  : Finished HH model building
16/01/2012 08:49:41 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 08:51:20 : INFO  : html domain output complete ID 'db9cf24852b95d1c'
16/01/2012 09:16:42 : INFO  : Run end  : Mon Jan 16 09:16:41 GMT 2012
