Phyre 2 Results for P0AFR2

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0AFR2
Date | Thu Jan 5 11:27:02 GMT 2012
Unique Job ID | db9cf24852b95d1c

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3qe7A_
Top template information
PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa
Confidence and coverage
Confidence: | 100.0% | Coverage: | 67%
377 residues ( 67% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
494 residues ( 88%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | K | I | F | S | S | H | V | M | P | F | R | A | L | I | D | A | C | W | K | E | K | Y | T | A | A | R | F | T | R | D | L | I | A | G | I | T | V | G | I | I | A | I | P | L | A | M | A | L | A | I | G | S | G | V | A | P | Q | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | G | L | Y | T | A | A | V | A | G | I | V | I | A | L | T | G | G | S | R | F | S | V | S | G | P | T | A | A | F | V | V | I | L | Y | P | V | S | Q | Q | F | G | L | A | G | L | L | V | A | T | L | L | S | G | I | F | L | I | L | M | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | A | R | F | G | R | L | I | E | Y | I | P | V | S | V | T | L | G | F | T | S | G | I | G | I | T | I | G | T | M | Q | I | K | D | F | L | G | L | Q | M | A | H | V | P | E | H | Y | L | Q | K | V | G | A | L | F | M | A | L | P | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | I | N | V | G | D | A | A | I | G | I | V | T | L | G | I | L | V | F | W | P | R | L | G | I | R | L | P | G | H | L | P | A | L | L | A | G | C | A | V | M | G | I | V | N | L | L | G | G | H | V | A | T | I | G | S | Q | F | H | Y | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | L | A | D | G | S | Q | G | N | G | I | P | Q | L | L | P | Q | L | V | L | P | W | D | L | P | N | S | E | F | T | L | T | W | D | S | I | R | T | L | L | P | A | A | F | S | M | A | M | L | G | A | I | E | S | L | L | C | A | V | V | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | D | G | M | T | G | T | K | H | K | A | N | S | E | L | V | G | Q | G | L | G | N | I | I | A | P | F | F | G | G | I | T | A | T | A | A | I | A | R | S | A | A | N | V | R | A | G | A | T | S | P | I | S | A | V | I | H | S | I | L | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | I | L | A | L | L | V | L | A | P | L | L | S | W | L | P | L | S | A | M | A | A | L | L | L | M | V | A | W | N | M | S | E | A | H | K | V | V | D | L | L | R | H | A | P | K | D | D | I | I | V | M | L | L | C | M | S | L | T | V | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | F | D | M | V | I | A | I | S | V | G | I | V | L | A | S | L | L | F | M | R | R | I | A | R | M | T | R | L | A | P | V | V | V | D | V | P | D | D | V | L | V | L | R | V | I | G | P | L | F | F | A | A | A | E | G | L | F | T | D | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | E | S | R | L | E | G | K | R | I | V | I | L | K | W | D | A | V | P | V | L | D | A | G | G | L | D | A | F | Q | R | F | V | K | R | L | P | E | G | C | E | L | R | V | C | N | V | E | F | Q | P | L | R | T | M | A | R | A | G | I | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | .
Sequence |  | P | I | P | G | R | L | A | F | F | P | N | R | R | A | A | M | A | D | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3qe7A_ |

### PDB 3qe7 chain A

Region: 25 - 437
Aligned: 377
Modelled: 377
Confidence: 100.0%
Identity: 16%
PDB header:transport protein
Chain: A: PDB Molecule:uracil permease;
PDBTitle: crystal structure of uracil transporter--uraa

Phyre2
2 |
| c3ny7A_ |

### PDB 3ny7 chain A

Region: 443 - 559
Aligned: 117
Modelled: 117
Confidence: 99.9%
Identity: 98%
PDB header:membrane protein
Chain: A: PDB Molecule:sulfate transporter;
PDBTitle: stas domain of ychm bound to acp

Phyre2
3 |
| c3lloA_ |

### PDB 3llo chain A

Region: 449 - 559
Aligned: 105
Modelled: 111
Confidence: 99.9%
Identity: 17%
PDB header:motor protein
Chain: A: PDB Molecule:prestin;
PDBTitle: crystal structure of the stas domain of motor protein prestin (anion2 transporter slc26a5)

Phyre2
4 |
| c3mglA_ |

### PDB 3mgl chain A

Region: 449 - 558
Aligned: 110
Modelled: 110
Confidence: 99.9%
Identity: 24%
PDB header:transport protein
Chain: A: PDB Molecule:sulfate permease family protein;
PDBTitle: crystal structure of permease family protein from vibrio2 cholerae

Phyre2
5 |
| c3oirA_ |

### PDB 3oir chain A

Region: 451 - 558
Aligned: 108
Modelled: 108
Confidence: 99.9%
Identity: 28%
PDB header:transport protein
Chain: A: PDB Molecule:sulfate transporter sulfate transporter family protein;
PDBTitle: crystal structure of sulfate transporter family protein from wolinella2 succinogenes

Phyre2
6 |
| c2klnA_ |

### PDB 2kln chain A

Region: 449 - 559
Aligned: 111
Modelled: 111
Confidence: 99.8%
Identity: 20%
PDB header:transport protein
Chain: A: PDB Molecule:probable sulphate-transport transmembrane protein, cog0659;
PDBTitle: solution structure of stas domain of rv1739c from m. tuberculosis

Phyre2
7 |
| d1auza_ |

### PDB 1auz chain A

Region: 452 - 559
Aligned: 105
Modelled: 108
Confidence: 99.7%
Identity: 26%
Fold: SpoIIaa-like
Superfamily: SpoIIaa-like
Family: Anti-sigma factor antagonist SpoIIaa

Phyre2
8 |
| d1th8b_ |

### PDB 1th8 chain B

Region: 452 - 559
Aligned: 105
Modelled: 108
Confidence: 99.7%
Identity: 25%
Fold: SpoIIaa-like
Superfamily: SpoIIaa-like
Family: Anti-sigma factor antagonist SpoIIaa

Phyre2
9 |
| c3f43A_ |

### PDB 3f43 chain A

Region: 453 - 559
Aligned: 104
Modelled: 105
Confidence: 99.6%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:putative anti-sigma factor antagonist tm1081;
PDBTitle: crystal structure of a putative anti-sigma factor antagonist (tm1081)2 from thermotoga maritima at 1.59 a resolution

Phyre2
10 |
| c3lklB_ |

### PDB 3lkl chain B

Region: 457 - 536
Aligned: 79
Modelled: 80
Confidence: 99.6%
Identity: 20%
PDB header:transport protein
Chain: B: PDB Molecule:antisigma-factor antagonist stas;
PDBTitle: crystal structure of the c-terminal domain of anti-sigma factor2 antagonist stas from rhodobacter sphaeroides

Phyre2
11 |
| c2vy9A_ |

### PDB 2vy9 chain A

Region: 457 - 559
Aligned: 101
Modelled: 103
Confidence: 99.6%
Identity: 14%
PDB header:gene regulation
Chain: A: PDB Molecule:anti-sigma-factor antagonist;
PDBTitle: molecular architecture of the stressosome, a signal2 integration and transduction hub

Phyre2
12 |
| d1vc1a_ |

### PDB 1vc1 chain A

Region: 450 - 555
Aligned: 103
Modelled: 106
Confidence: 99.5%
Identity: 18%
Fold: SpoIIaa-like
Superfamily: SpoIIaa-like
Family: Anti-sigma factor antagonist SpoIIaa

Phyre2
13 |
| c3t6oA_ |

### PDB 3t6o chain A

Region: 450 - 559
Aligned: 107
Modelled: 109
Confidence: 99.4%
Identity: 14%
PDB header:transport protein
Chain: A: PDB Molecule:sulfate transporter/antisigma-factor antagonist stas;
PDBTitle: the structure of an anti-sigma-factor antagonist (stas) domain protein2 from planctomyces limnophilus.

Phyre2
14 |
| d1h4xa_ |

### PDB 1h4x chain A

Region: 457 - 559
Aligned: 98
Modelled: 103
Confidence: 99.3%
Identity: 14%
Fold: SpoIIaa-like
Superfamily: SpoIIaa-like
Family: Anti-sigma factor antagonist SpoIIaa

Phyre2
15 |
| c3ih9A_ |

### PDB 3ih9 chain A

Region: 439 - 527
Aligned: 89
Modelled: 89
Confidence: 95.9%
Identity: 26%
PDB header:hydrolase
Chain: A: PDB Molecule:salt-tolerant glutaminase;
PDBTitle: crystal structure analysis of mglu in its tris form

Phyre2
16 |
| c3bezC_ |

### PDB 3bez chain C

Region: 457 - 522
Aligned: 66
Modelled: 66
Confidence: 74.2%
Identity: 11%
PDB header:hydrolase
Chain: C: PDB Molecule:protease 4;
PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals

Phyre2
17 |
| d2nu7b1 |

### PDB 2nu7 chain B domain 1

Region: 471 - 559
Aligned: 83
Modelled: 89
Confidence: 72.1%
Identity: 12%
Fold: Flavodoxin-like
Superfamily: Succinyl-CoA synthetase domains
Family: Succinyl-CoA synthetase domains

Phyre2
18 |
| d1mvoa_ |

### PDB 1mvo chain A

Region: 470 - 559
Aligned: 85
Modelled: 88
Confidence: 70.8%
Identity: 13%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2
19 |
| c2dfwA_ |

### PDB 2dfw chain A

Region: 439 - 489
Aligned: 51
Modelled: 49
Confidence: 69.4%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:salt-tolerant glutaminase;
PDBTitle: crystal structure of a major fragment of the salt-tolerant2 glutaminase from micrococcus luteus k-3

Phyre2
20 |
| c3b2nA_ |

### PDB 3b2n chain A

Region: 470 - 559
Aligned: 85
Modelled: 90
Confidence: 68.6%
Identity: 8%
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3qe7A_ |
|  | 100.0 | 16 | PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa
2 | c3ny7A_ |
|  | 99.9 | 98 | PDB header:membrane protein Chain: A: PDB Molecule:sulfate transporter; PDBTitle: stas domain of ychm bound to acp
3 | c3lloA_ |
|  | 99.9 | 17 | PDB header:motor protein Chain: A: PDB Molecule:prestin; PDBTitle: crystal structure of the stas domain of motor protein prestin (anion2 transporter slc26a5)
4 | c3mglA_ |
|  | 99.9 | 24 | PDB header:transport protein Chain: A: PDB Molecule:sulfate permease family protein; PDBTitle: crystal structure of permease family protein from vibrio2 cholerae
5 | c3oirA_ |
|  | 99.9 | 28 | PDB header:transport protein Chain: A: PDB Molecule:sulfate transporter sulfate transporter family protein; PDBTitle: crystal structure of sulfate transporter family protein from wolinella2 succinogenes
6 | c2klnA_ |
|  | 99.8 | 20 | PDB header:transport protein Chain: A: PDB Molecule:probable sulphate-transport transmembrane protein, cog0659; PDBTitle: solution structure of stas domain of rv1739c from m. tuberculosis
7 | d1auza_ |
|  | 99.7 | 26 | Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Anti-sigma factor antagonist SpoIIaa
8 | d1th8b_ |
|  | 99.7 | 25 | Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Anti-sigma factor antagonist SpoIIaa
9 | c3f43A_ |
|  | 99.6 | 16 | PDB header:transcription Chain: A: PDB Molecule:putative anti-sigma factor antagonist tm1081; PDBTitle: crystal structure of a putative anti-sigma factor antagonist (tm1081)2 from thermotoga maritima at 1.59 a resolution
10 | c3lklB_ |
|  | 99.6 | 20 | PDB header:transport protein Chain: B: PDB Molecule:antisigma-factor antagonist stas; PDBTitle: crystal structure of the c-terminal domain of anti-sigma factor2 antagonist stas from rhodobacter sphaeroides
11 | c2vy9A_ |
|  | 99.6 | 14 | PDB header:gene regulation Chain: A: PDB Molecule:anti-sigma-factor antagonist; PDBTitle: molecular architecture of the stressosome, a signal2 integration and transduction hub
12 | d1vc1a_ |
|  | 99.5 | 18 | Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Anti-sigma factor antagonist SpoIIaa
13 | c3t6oA_ |
|  | 99.4 | 14 | PDB header:transport protein Chain: A: PDB Molecule:sulfate transporter/antisigma-factor antagonist stas; PDBTitle: the structure of an anti-sigma-factor antagonist (stas) domain protein2 from planctomyces limnophilus.
14 | d1h4xa_ |
|  | 99.3 | 14 | Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Anti-sigma factor antagonist SpoIIaa
15 | c3ih9A_ |
|  | 95.9 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:salt-tolerant glutaminase; PDBTitle: crystal structure analysis of mglu in its tris form
16 | c3bezC_ |
|  | 74.2 | 11 | PDB header:hydrolase Chain: C: PDB Molecule:protease 4; PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals
17 | d2nu7b1 |
|  | 72.1 | 12 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
18 | d1mvoa_ |
|  | 70.8 | 13 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
19 | c2dfwA_ |
|  | 69.4 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:salt-tolerant glutaminase; PDBTitle: crystal structure of a major fragment of the salt-tolerant2 glutaminase from micrococcus luteus k-3
20 | c3b2nA_ |
|  | 68.6 | 8 | PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
21 | c3bl4B_ |
| not modelled | 66.7 | 17 | PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function (arth_0117) from2 arthrobacter sp. fb24 at 2.20 a resolution
22 | d1l7vc_ |
| not modelled | 60.1 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
23 | c1yqtA_ |
| not modelled | 57.4 | 18 | PDB header:hydrolyase/translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: rnase-l inhibitor
24 | d2hyda1 |
| not modelled | 55.6 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
25 | c3jteA_ |
| not modelled | 55.2 | 9 | PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
26 | d1dz3a_ |
| not modelled | 48.3 | 11 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
27 | d2q3la1 |
| not modelled | 48.0 | 15 | Fold:SpoIIaa-like Superfamily:SpoIIaa-like Family:Sfri0576-like
28 | c3gfzB_ |
| not modelled | 46.4 | 12 | PDB header:hydrolase, signaling protein Chain: B: PDB Molecule:klebsiella pneumoniae blrp1; PDBTitle: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex
29 | c2qy6A_ |
| not modelled | 45.5 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7
30 | c2pr7A_ |
| not modelled | 45.1 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family; PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution
31 | c2deoA_ |
| not modelled | 43.6 | 10 | PDB header:hydrolase Chain: A: PDB Molecule:441aa long hypothetical nfed protein; PDBTitle: 1510-n membrane protease specific for a stomatin homolog from2 pyrococcus horikoshii
32 | c3hv9A_ |
| not modelled | 43.3 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:protein fimx; PDBTitle: crystal structure of fimx eal domain from pseudomonas aeruginosa
33 | c2zwmA_ |
| not modelled | 42.9 | 11 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
34 | d1a04a2 |
| not modelled | 41.0 | 11 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
35 | d1tg6a1 |
| not modelled | 40.7 | 13 | Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit
36 | c3hvbB_ |
| not modelled | 38.9 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:protein fimx; PDBTitle: crystal structure of the dual-domain ggdef-eal module of2 fimx from pseudomonas aeruginosa
37 | d1pf4a1 |
| not modelled | 37.9 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
38 | c3ozxA_ |
| not modelled | 36.9 | 13 | PDB header:hydrolase, translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
39 | c2yz2B_ |
| not modelled | 36.7 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222; PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system
40 | d1ys7a2 |
| not modelled | 36.0 | 8 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
41 | c3i42A_ |
| not modelled | 35.3 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
42 | c3eulB_ |
| not modelled | 34.0 | 9 | PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
43 | c2qv0A_ |
| not modelled | 33.8 | 7 | PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae
44 | d2awna2 |
| not modelled | 33.7 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
45 | d1ji0a_ |
| not modelled | 33.2 | 7 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
46 | d1u0sy_ |
| not modelled | 32.9 | 14 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
47 | c2q3eH_ |
| not modelled | 32.6 | 14 | PDB header:oxidoreductase Chain: H: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: structure of human udp-glucose dehydrogenase complexed with nadh and2 udp-glucose
48 | d2csua3 |
| not modelled | 31.9 | 15 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
49 | c3cz5B_ |
| not modelled | 31.7 | 13 | PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
50 | d1b0ua_ |
| not modelled | 30.6 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
51 | c3nhaA_ |
| not modelled | 30.2 | 18 | PDB header:transport protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 6, mitochondrial; PDBTitle: nucleotide binding domain of human abcb6 (adp mg bound structure)
52 | c2r6fA_ |
| not modelled | 29.0 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:excinuclease abc subunit a; PDBTitle: crystal structure of bacillus stearothermophilus uvra
53 | c2it1B_ |
| not modelled | 29.0 | 17 | PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii
54 | d1jbea_ |
| not modelled | 28.4 | 12 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
55 | c3nhzA_ |
| not modelled | 28.2 | 11 | PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra
56 | c3dcmX_ |
| not modelled | 27.9 | 2 | PDB header:transferase Chain: X: PDB Molecule:uncharacterized protein tm_1570; PDBTitle: crystal structure of the thermotoga maritima spout family2 rna-methyltransferase protein tm1570 in complex with s-3 adenosyl-l-methionine
57 | c2pcjB_ |
| not modelled | 27.8 | 8 | PDB header:hydrolase Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold; PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5
58 | d1mv5a_ |
| not modelled | 27.2 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
59 | d1peya_ |
| not modelled | 25.2 | 11 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
60 | d1krwa_ |
| not modelled | 25.2 | 10 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
61 | d1s8na_ |
| not modelled | 25.1 | 15 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
62 | d1g6ha_ |
| not modelled | 23.9 | 9 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
63 | c2r6oB_ |
| not modelled | 23.6 | 14 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative diguanylate cyclase/phosphodiesterase (ggdef & eal PDBTitle: crystal structure of putative diguanylate cyclase/phosphodiesterase2 from thiobacillus denitrificans
64 | c3hdgE_ |
| not modelled | 23.5 | 13 | PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
65 | c3kthD_ |
| not modelled | 22.8 | 8 | PDB header:hydrolase Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit; PDBTitle: structure of clpp from bacillus subtilis in orthorombic crystal form
66 | c2nq2C_ |
| not modelled | 22.2 | 10 | PDB header:metal transport Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
67 | d2cbya1 |
| not modelled | 22.0 | 9 | Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit
68 | d1xhfa1 |
| not modelled | 22.0 | 8 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
69 | c2csuB_ |
| not modelled | 21.7 | 15 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3
70 | c3hn7A_ |
| not modelled | 21.3 | 10 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution
71 | c1vciA_ |
| not modelled | 21.0 | 13 | PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp
72 | d2iw0a1 |
| not modelled | 21.0 | 17 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase
73 | c3g5uB_ |
| not modelled | 20.9 | 13 | PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
74 | d1jj7a_ |
| not modelled | 20.8 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
75 | c1eucB_ |
| not modelled | 20.7 | 6 | PDB header:ligase Chain: B: PDB Molecule:succinyl-coa synthetase, beta chain; PDBTitle: crystal structure of dephosphorylated pig heart, gtp-2 specific succinyl-coa synthetase
76 | c3llmB_ |
| not modelled | 19.8 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase
77 | d2ayxa1 |
| not modelled | 19.7 | 10 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
78 | c1e1cA_ |
| not modelled | 19.6 | 19 | PDB header:isomerase Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain; PDBTitle: methylmalonyl-coa mutase h244a mutant
79 | d1zesa1 |
| not modelled | 19.2 | 9 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
80 | c1tg6G_ |
| not modelled | 19.2 | 13 | PDB header:hydrolase Chain: G: PDB Molecule:putative atp-dependent clp protease proteolytic subunit; PDBTitle: crystallography and mutagenesis point to an essential role for the n-2 terminus of human mitochondrial clpp
81 | c3lpzA_ |
| not modelled | 19.1 | 29 | PDB header:protein transport Chain: A: PDB Molecule:get4 (yor164c homolog); PDBTitle: crystal structure of c. therm. get4
82 | c2rjnA_ |
| not modelled | 19.0 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
83 | c3a0rB_ |
| not modelled | 18.8 | 12 | PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
84 | c3nvbA_ |
| not modelled | 18.1 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate
85 | c2cbyG_ |
| not modelled | 17.7 | 9 | PDB header:hydrolase Chain: G: PDB Molecule:atp-dependent clp protease proteolytic subunit 1; PDBTitle: crystal structure of the atp-dependent clp protease2 proteolytic subunit 1 (clpp1) from mycobacterium3 tuberculosis
86 | c2zayA_ |
| not modelled | 17.2 | 9 | PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans
87 | c3pihA_ |
| not modelled | 16.9 | 19 | PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
88 | d2basa1 |
| not modelled | 16.4 | 17 | Fold:TIM beta/alpha-barrel Superfamily:EAL domain-like Family:EAL domain
89 | c1wazA_ |
| not modelled | 16.1 | 28 | PDB header:transport protein Chain: A: PDB Molecule:merf; PDBTitle: nmr structure determination of the bacterial mercury2 transporter, merf, in micelles
90 | c1oxtB_ |
| not modelled | 16.0 | 19 | PDB header:transport protein Chain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus
91 | c3s83A_ |
| not modelled | 16.0 | 17 | PDB header:signaling protein Chain: A: PDB Molecule:ggdef family protein; PDBTitle: crystal structure of eal domain from caulobacter crescentus cb15
92 | c3u5cH_ |
| not modelled | 15.8 | 4 | PDB header:ribosome Chain: H: PDB Molecule:40s ribosomal protein s7-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution
93 | d1jb0i_ |
| not modelled | 15.7 | 19 | Fold:Single transmembrane helix Superfamily:Subunit VIII of photosystem I reaction centre, PsaI Family:Subunit VIII of photosystem I reaction centre, PsaI
94 | c2d2fA_ |
| not modelled | 15.5 | 15 | PDB header:protein binding Chain: A: PDB Molecule:sufc protein; PDBTitle: crystal structure of atypical cytoplasmic abc-atpase sufc from thermus2 thermophilus hb8
95 | c2nu9E_ |
| not modelled | 15.4 | 12 | PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form
96 | c2hx1D_ |
| not modelled | 15.3 | 15 | PDB header:hydrolase Chain: D: PDB Molecule:predicted sugar phosphatases of the had PDBTitle: crystal structure of possible sugar phosphatase, had2 superfamily (zp_00311070.1) from cytophaga hutchinsonii3 atcc 33406 at 2.10 a resolution
97 | c2pzfB_ |
| not modelled | 15.3 | 10 | PDB header:hydrolase Chain: B: PDB Molecule:cystic fibrosis transmembrane conductance regulator; PDBTitle: minimal human cftr first nucleotide binding domain as a head-to-tail2 dimer with delta f508
98 | d1heya_ |
| not modelled | 14.9 | 12 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
99 | d1yg6a1 |
| not modelled | 14.9 | 8 | Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Clp protease, ClpP subunit

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0