Phyre 2 alignment of P0AFR2 with c3pfmA_

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Job Description | P0AFR2
Confidence | 14.84% | Date | Thu Jan 5 11:27:02 GMT 2012
Rank | 100 | Aligned Residues | 54
% Identity | 13% | Template | c3pfmA_
PDB info | PDB header:signaling protein | Chain: A: PDB Molecule:ggdef domain protein; | PDBTitle: crystal structure of a eal domain of ggdef domain protein from2 pseudomonas fluorescens pf
Resolution | 2.91 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 486 | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . |  |  | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . |  | . | . | 520 | . | . | . | . | . | . | . | . | . |  | 530 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | K | R | I | V | I | L | K | W | D | A | V | P | V | L | D | A | . | . | G | G | L | D | A | F | Q | R | F | V | K | R | L | P | E | . | G | C | E | L | R | V | C | N | V | E | F | Q | . | P | L | R | T | M | A | R | A | G | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | L | A | Y | L | K | I | D | G | S | Y | I | R | D | I | D | Q | E | S | D | K | R | L | F | I | E | A | I | Q | R | A | A | H | S | I | D | L | P | L | I | A | E | R | V | E | T | E | G | E | L | Q | V | I | R | E | X | G | L
Template Known Secondary structure |  | T |  | S |  |  |  |  |  | G | G | G | G | T | T | T | T | T |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 576 | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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