Phyre 2 alignment of P0AFR2 with c3u5cH_

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Job Description | P0AFR2
Confidence | 15.83% | Date | Thu Jan 5 11:27:02 GMT 2012
Rank | 92 | Aligned Residues | 50
% Identity | 4% | Template | c3u5cH_
PDB info | PDB header:ribosome | Chain: H: PDB Molecule:40s ribosomal protein s7-a; | PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution
Resolution | 3.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 509 | 510 | . | . | . | . | . |  | . | . |  |  | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Q | R | F | V | K | R | L | . | P | E | . | . | G | C | E | L | R | V | C | N | V | E | F | Q | P | L | R | T | M | A | R | A | G | I | Q | P | I | P | G | R | L | A | F | F | P | N | R | R | A | A | M | A | D
Query Conservation |  |  |  |  |  |  |  |  | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | K | L | T | R | E | L | E | K | K | F | Q | D | R | H | V | I | F | L | A | E | R | R | I | L | P | K | P | S | R | T | S | R | Q | V | Q | K | R | P | R | S | R | T | L | T | A | V | H | D | K | I | L | E
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | T | T |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S |  |  |  | S |  |  |  | G | G | G | S |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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