Phyre 2 alignment of P0AFR2 with c3pihA_

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Job Description | P0AFR2
Confidence | 16.86% | Date | Thu Jan 5 11:27:02 GMT 2012
Rank | 87 | Aligned Residues | 57
% Identity | 19% | Template | c3pihA_
PDB info | PDB header:hydrolase/dna | Chain: A: PDB Molecule:uvrabc system protein a; | PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
Resolution | 2.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 475 | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . |  | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | L | F | T | D | L | E | S | R | L | E | G | K | R | I | V | I | L | K | W | D | A | V | P | V | L | D | A | G | G | L | D | A | F | Q | R | F | V | K | R | L | . | P | E | G | C | E | L | R | V | C | N | V | E | F | Q | P | L | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | L | A | S | E | L | R | K | R | D | T | G | R | T | L | Y | I | L | D | E | . | P | T | V | G | L | H | F | E | D | V | R | K | L | V | E | V | L | H | R | L | V | D | R | G | N | T | V | I | V | I | E | H | N | L | D | V | I | K
Template Known Secondary structure |  |  |  |  |  |  |  | T | S |  |  |  | S | S |  |  |  |  |  |  | S | . | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 815 | . | . | . | . | 820 | . | . | . | . | . | . | . | . | . | 830 | . | . | . | . |  | . | . | . | . | . | 840 | . | . | . | . | . | . | . | . | . | 850 | . | . | . | . | . | . | . | . | . | 860 | . | . | . | . | . | . | . | . | . | 870 | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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