Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	V	I	K	M	T	D	L	D	L	A	G	K	R	V	F	I	R	A	D	L	N	V	P	V	K	D	G	K	V	T	S	D	A	R	I	R	A	S	L	P	T	I	E	L	A	L	K	Q	G	A	K	V	M	V	T	S	H	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																							?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	R	P	T	E	G	E	Y	N	E	E	F	S	L	L	P	V	V	N	Y	L	K	D	K	L	S	N	P	V	R	L	V	K	D	Y	L	D	G	V	D	V	A	E	G	E	L	V	V	L	E	N	V	R	F	N	K	G	E	K	K
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?																																																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	D	E	T	L	S	K	K	Y	A	A	L	C	D	V	F	V	M	D	A	F	G	T	A	H	R	A	Q	A	S	T	H	G	I	G	K	F	A	D	V	A	C	A	G	P	L	L	A	A	E	L	D	A	L	G	K	A	L	K	E
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	A	R	P	M	V	A	I	V	G	G	S	K	V	S	T	K	L	T	V	L	D	S	L	S	K	I	A	D	Q	L	I	V	G	G	G	I	A	N	T	F	I	A	A	Q	G	H	D	V	G	K	S	L	Y	E	A	D	L	V	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	A	K	R	L	L	T	T	C	N	I	P	V	P	S	D	V	R	V	A	T	E	F	S	E	T	A	P	A	T	L	K	S	V	N	D	V	K	A	D	E	Q	I	L	D	I	G	D	A	S	A	Q	E	L	A	E	I	L	K	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	K	T	I	L	W	N	G	P	V	G	V	F	E	F	P	N	F	R	K	G	T	E	I	V	A	N	A	I	A	D	S	E	A	F	S	I	A	G	G	G	D	T	L	A	A	I	D	L	F	G	I	A	D	K	I	S	Y	I	S
Secondary structure
SS confidence
Disorder																																																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Sequence		T	G	G	G	A	F	L	E	F	V	E	G	K	V	L	P	A	V	A	M	L	E	E	R	A	K	K
Secondary structure
SS confidence
Disorder																										?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1zmr chain A Region: 2 - 387 Aligned: 386 Modelled: 386 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of the e. coli phosphoglycerate kinase Phyre2 PDB 1php chain A Region: 1 - 384 Aligned: 382 Modelled: 384 Confidence: 100.0% Identity: 47% Fold: Phosphoglycerate kinase Superfamily: Phosphoglycerate kinase Family: Phosphoglycerate kinase Phyre2 PDB 1vpe chain A Region: 2 - 386 Aligned: 383 Modelled: 385 Confidence: 100.0% Identity: 46% Fold: Phosphoglycerate kinase Superfamily: Phosphoglycerate kinase Family: Phosphoglycerate kinase Phyre2 PDB 3q3v chain A Region: 2 - 383 Aligned: 379 Modelled: 382 Confidence: 100.0% Identity: 45% PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. Phyre2 PDB 16pk chain A Region: 2 - 384 Aligned: 383 Modelled: 383 Confidence: 100.0% Identity: 42% Fold: Phosphoglycerate kinase Superfamily: Phosphoglycerate kinase Family: Phosphoglycerate kinase Phyre2 PDB 1v6s chain A Region: 3 - 382 Aligned: 377 Modelled: 380 Confidence: 100.0% Identity: 43% Fold: Phosphoglycerate kinase Superfamily: Phosphoglycerate kinase Family: Phosphoglycerate kinase Phyre2 PDB 2cun chain A Region: 3 - 387 Aligned: 380 Modelled: 385 Confidence: 100.0% Identity: 38% PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 Phyre2 PDB 1vjd chain A Region: 2 - 383 Aligned: 380 Modelled: 382 Confidence: 100.0% Identity: 40% Fold: Phosphoglycerate kinase Superfamily: Phosphoglycerate kinase Family: Phosphoglycerate kinase Phyre2 PDB 1qpg chain A Region: 2 - 385 Aligned: 381 Modelled: 384 Confidence: 100.0% Identity: 43% Fold: Phosphoglycerate kinase Superfamily: Phosphoglycerate kinase Family: Phosphoglycerate kinase Phyre2 PDB 1hdi chain A Region: 2 - 383 Aligned: 380 Modelled: 382 Confidence: 100.0% Identity: 39% Fold: Phosphoglycerate kinase Superfamily: Phosphoglycerate kinase Family: Phosphoglycerate kinase Phyre2 PDB 1ltk chain A Region: 2 - 383 Aligned: 379 Modelled: 382 Confidence: 100.0% Identity: 39% Fold: Phosphoglycerate kinase Superfamily: Phosphoglycerate kinase Family: Phosphoglycerate kinase Phyre2 PDB 1fw8 chain A Region: 71 - 386 Aligned: 314 Modelled: 316 Confidence: 100.0% Identity: 40% Fold: Phosphoglycerate kinase Superfamily: Phosphoglycerate kinase Family: Phosphoglycerate kinase Phyre2 PDB 3zvm chain A Region: 40 - 159 Aligned: 101 Modelled: 102 Confidence: 82.0% Identity: 21% PDB header:hydrolase/transferase/dna Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase; PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase Phyre2 PDB 2pju chain D Region: 236 - 371 Aligned: 119 Modelled: 136 Confidence: 80.4% Identity: 16% PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr Phyre2 PDB 1yj5 chain A domain 1 Region: 40 - 159 Aligned: 105 Modelled: 106 Confidence: 76.9% Identity: 18% Fold: HAD-like Superfamily: HAD-like Family: phosphatase domain of polynucleotide kinase Phyre2 PDB 1yj5 chain B Region: 40 - 159 Aligned: 105 Modelled: 106 Confidence: 73.6% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Phyre2 PDB 3eoe chain C Region: 42 - 140 Aligned: 94 Modelled: 94 Confidence: 64.9% Identity: 13% PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007 Phyre2 PDB 2pju chain A domain 1 Region: 282 - 371 Aligned: 84 Modelled: 90 Confidence: 55.4% Identity: 14% Fold: Chelatase-like Superfamily: PrpR receptor domain-like Family: PrpR receptor domain-like Phyre2 PDB 1c8b chain A Region: 162 - 280 Aligned: 105 Modelled: 119 Confidence: 53.2% Identity: 23% Fold: Phosphorylase/hydrolase-like Superfamily: HybD-like Family: Germination protease Phyre2 PDB 1pkl chain B Region: 40 - 140 Aligned: 95 Modelled: 101 Confidence: 50.2% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:protein (pyruvate kinase); PDBTitle: the structure of leishmania pyruvate kinase Phyre2 1 c1zmrA_ 2 d1phpa_ 3 d1vpea_ 4 c3q3vA_ 5 d16pka_ 6 d1v6sa_ 7 c2cunA_ 8 d1vjda_ 9 d1qpga_ 10 d1hdia_ 11 d1ltka_ 12 d1fw8a_ 13 c3zvmA_ 14 c2pjuD_ 15 d1yj5a1 16 c1yj5B_ 17 c3eoeC_ 18 d2pjua1 19 d1c8ba_ 20 c1pklB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1zmrA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of the e. coli phosphoglycerate kinase 2 d1phpa_ 100.0 47 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 3 d1vpea_ 100.0 46 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 4 c3q3vA_ 100.0 45 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. 5 d16pka_ 100.0 42 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 6 d1v6sa_ 100.0 43 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 7 c2cunA_ 100.0 38 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 8 d1vjda_ 100.0 40 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 9 d1qpga_ 100.0 43 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 10 d1hdia_ 100.0 39 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 11 d1ltka_ 100.0 39 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 12 d1fw8a_ 100.0 40 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 13 c3zvmA_ 82.0 21 PDB header:hydrolase/transferase/dna Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase; PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase 14 c2pjuD_ 80.4 16 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 15 d1yj5a1 76.9 18 Fold:HAD-like Superfamily:HAD-like Family:phosphatase domain of polynucleotide kinase 16 c1yj5B_ 73.6 18 PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 17 c3eoeC_ 64.9 13 PDB header:transferase Chain: C: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007 18 d2pjua1 55.4 14 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 19 d1c8ba_ 53.2 23 Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Germination protease 20 c1pklB_ 50.2 18 PDB header:transferase Chain: B: PDB Molecule:protein (pyruvate kinase); PDBTitle: the structure of leishmania pyruvate kinase 21 c2wdfA_ not modelled 49.9 32 PDB header:hydrolase Chain: A: PDB Molecule:sulfur oxidation protein soxb; PDBTitle: termus thermophilus sulfate thiohydrolase soxb 22 c1ecjB_ not modelled 47.7 29 PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer 23 d2btya1 not modelled 47.6 19 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 24 c2q5cA_ not modelled 46.7 7 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 25 d1weka_ not modelled 43.8 20 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 26 c2qyhD_ not modelled 43.3 16 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical conserved protein, gk1056; PDBTitle: crystal structure of the hypothetical protein (gk1056) from2 geobacillus kaustophilus hta426 27 c3cxtA_ not modelled 42.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:dehydrogenase with different specificities; PDBTitle: quaternary complex structure of gluconate 5-dehydrogenase from2 streptococcus suis type 2 28 c2e28A_ not modelled 42.3 14 PDB header:transferase Chain: A: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure analysis of pyruvate kinase from bacillus2 stearothermophilus 29 d1dqua_ not modelled 38.6 18 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 30 d1ecfa1 not modelled 37.8 27 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 31 d1bj4a_ not modelled 36.7 14 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 32 c1e0tD_ not modelled 35.7 16 PDB header:phosphotransferase Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: r292d mutant of e. coli pyruvate kinase 33 c3e0vB_ not modelled 35.1 17 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions 34 c2r98A_ not modelled 35.0 18 PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae 35 d1t3ta2 not modelled 34.9 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 36 c3dnpA_ not modelled 33.2 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:stress response protein yhax; PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis 37 d1uala_ not modelled 32.7 27 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 38 d1u7za_ not modelled 32.3 13 Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like 39 c3ibgF_ not modelled 30.7 20 PDB header:hydrolase Chain: F: PDB Molecule:atpase, subunit of the get complex; PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp 40 c2wdzD_ not modelled 30.0 21 PDB header:oxidoreductase Chain: D: PDB Molecule:short-chain dehydrogenase/reductase; PDBTitle: crystal structure of the short chain dehydrogenase2 galactitol-dehydrogenase (gatdh) of rhodobacter3 sphaeroides in complex with nad+ and 1,2-pentandiol 41 c2v5hB_ not modelled 29.7 17 PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 42 c3dfzB_ not modelled 29.5 37 PDB header:oxidoreductase Chain: B: PDB Molecule:precorrin-2 dehydrogenase; PDBTitle: sirc, precorrin-2 dehydrogenase 43 d1p9pa_ not modelled 29.0 24 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 44 d2z1aa2 not modelled 28.9 32 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 45 c2j5tF_ not modelled 27.3 9 PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate 46 c3jyfB_ not modelled 27.2 16 PDB header:hydrolase Chain: B: PDB Molecule:2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- PDBTitle: the crystal structure of a 2,3-cyclic nucleotide 2-2 phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor3 protein from klebsiella pneumoniae subsp. pneumoniae mgh 78578 47 d2gv8a2 not modelled 27.2 26 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 48 c3dg8B_ not modelled 27.0 21 PDB header:oxidoreductase, transferase Chain: B: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate PDBTitle: quadruple mutant (n51i+c59r+s108n+i164l) plasmodium2 falciparum dihydrofolate reductase-thymidylate synthase3 (pfdhfr-ts) complexed with rjf670, nadph, and dump 49 c2radB_ not modelled 26.8 11 PDB header:biosynthetic protein Chain: B: PDB Molecule:succinoglycan biosynthesis protein; PDBTitle: crystal structure of the succinoglycan biosynthesis2 protein. northeast structural genomics consortium target3 bcr135 50 c1kyqC_ not modelled 26.7 26 PDB header:oxidoreductase, lyase Chain: C: PDB Molecule:siroheme biosynthesis protein met8; PDBTitle: met8p: a bifunctional nad-dependent dehydrogenase and2 ferrochelatase involved in siroheme synthesis. 51 d3b55a1 not modelled 26.6 11 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:EreA-like 52 c2kxhB_ not modelled 24.8 56 PDB header:protein binding Chain: B: PDB Molecule:peptide of far upstream element-binding protein 1; PDBTitle: solution structure of the first two rrm domains of fir in the complex2 with fbp nbox peptide 53 c1zdrB_ not modelled 24.7 30 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrofolate reductase; PDBTitle: dhfr from bacillus stearothermophilus 54 c2oemA_ not modelled 24.5 20 PDB header:isomerase Chain: A: PDB Molecule:2,3-diketo-5-methylthiopentyl-1-phosphate enolase; PDBTitle: crystal structure of a rubisco-like protein from geobacillus2 kaustophilus liganded with mg2+ and 2,3-diketohexane 1-phosphate 55 c3nkdB_ not modelled 24.1 21 PDB header:immune system Chain: B: PDB Molecule:crispr-associated protein cas1; PDBTitle: structure of crisp-associated protein cas1 from escherichia coli str.2 k-12 56 d1mv8a3 not modelled 24.1 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 57 d1knqa_ not modelled 23.8 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Gluconate kinase 58 c3fokH_ not modelled 23.8 18 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:uncharacterized protein cgl0159; PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115 59 c3kb8A_ not modelled 23.7 22 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine phosphoribosyltransferase; PDBTitle: 2.09 angstrom resolution structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-1) from bacillus anthracis str. 'ames3 ancestor' in complex with gmp 60 c3ctmH_ not modelled 23.0 27 PDB header:oxidoreductase Chain: H: PDB Molecule:carbonyl reductase; PDBTitle: crystal structure of a carbonyl reductase from candida2 parapsilosis with anti-prelog stereo-specificity 61 c3gveB_ not modelled 22.9 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yfkn protein; PDBTitle: crystal structure of calcineurin-like phosphoesterase yfkn from2 bacillus subtilis 62 d1j3ka_ not modelled 22.7 21 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:Dihydrofolate reductases 63 d2tpsa_ not modelled 22.2 12 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 64 c1vcnA_ not modelled 22.2 22 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 65 d1gph11 not modelled 21.7 26 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 66 c1yadD_ not modelled 21.7 19 PDB header:transcription Chain: D: PDB Molecule:regulatory protein teni; PDBTitle: structure of teni from bacillus subtilis 67 d2ae2a_ not modelled 21.6 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 68 d1ra9a_ not modelled 21.5 18 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:Dihydrofolate reductases 69 c1gph1_ not modelled 20.6 26 PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis 70 d2obba1 not modelled 20.3 18 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 71 c2v79B_ not modelled 20.1 16 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 72 d1juva_ not modelled 20.1 35 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:Dihydrofolate reductases 73 c3kc2A_ not modelled 20.0 16 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae 74 c2yybA_ not modelled 19.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1606; PDBTitle: crystal structure of ttha1606 from thermus thermophilus hb8 75 c3ek5A_ not modelled 19.5 15 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium 76 d1krha2 not modelled 19.4 27 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 77 d1kyqa1 not modelled 19.4 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Siroheme synthase N-terminal domain-like 78 d1wd5a_ not modelled 19.4 23 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 79 c2gezE_ not modelled 19.2 18 PDB header:hydrolase Chain: E: PDB Molecule:l-asparaginase alpha subunit; PDBTitle: crystal structure of potassium-independent plant asparaginase 80 d1sm4a2 not modelled 19.0 11 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 81 c1l9xA_ not modelled 18.9 25 PDB header:hydrolase Chain: A: PDB Molecule:gamma-glutamyl hydrolase; PDBTitle: structure of gamma-glutamyl hydrolase 82 d1l9xa_ not modelled 18.9 25 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 83 c2iz6A_ not modelled 18.8 17 PDB header:metal transport Chain: A: PDB Molecule:molybdenum cofactor carrier protein; PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein 84 c3t07D_ not modelled 18.3 17 PDB header:transferase/transferase inhibitor Chain: D: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of s. aureus pyruvate kinase in complex with a2 naturally occurring bis-indole alkaloid 85 d1wzca1 not modelled 18.3 18 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 86 d2ji7a1 not modelled 18.2 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 87 c1ii8B_ not modelled 17.9 29 PDB header:replication Chain: B: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of the p. furiosus rad50 atpase domain 88 c1f2uD_ not modelled 17.9 29 PDB header:replication Chain: D: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of rad50 abc-atpase 89 d2bmwa2 not modelled 17.8 21 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 90 d2b30a1 not modelled 17.2 26 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 91 c2hcuA_ not modelled 17.2 12 PDB header:lyase Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit; PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus2 mutans 92 c3rihB_ not modelled 17.0 25 PDB header:oxidoreductase Chain: B: PDB Molecule:short chain dehydrogenase or reductase; PDBTitle: crystal structure of a putative short chain dehydrogenase or reductase2 from mycobacterium abscessus 93 c2rd5A_ not modelled 17.0 14 PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 94 c3pvjB_ not modelled 16.9 13 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 95 d1ma3a_ not modelled 16.8 15 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 96 d1m2xa_ not modelled 16.7 11 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 97 d1ybda1 not modelled 16.4 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 98 c2c07A_ not modelled 16.1 19 PDB header:oxidoreductase Chain: A: PDB Molecule:3-oxoacyl-(acyl-carrier protein) reductase; PDBTitle: oxoacyl-acp reductase of plasmodium falciparum 99 d2c07a1 not modelled 16.1 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0