PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2wdzD_

Fold library id	PDB Header	Molecule	Title
c2wdzD_	PDB header: oxidoreductase	Chain: D: PDB Molecule: short-chain dehydrogenase/reductase;	PDBTitle: crystal structure of the short chain dehydrogenase2 galactitol-dehydrogenase (gatdh) of rhodobacter3 sphaeroides in complex with nad+ and 1,2-pentandiol

Links to external resources
Added to library: Sat Aug 28 20:56:52 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D Y R T V F R L D G A C A A V T G A G S G I G L E I C R A F A A S G A R L I L I D R E A A A L D R A A Q E L G A A V A A R I V A D V T D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
T T
T T T S T T
S
G G G
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E A M T A A A A E A E A V A P V S I L V N S A G I A R L H D A L E T D D A T W R Q V M A V N V D G M F W A S R A F G R A M V A R G A G A I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
G G G
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N L G S M S G T I V N R P Q F A S S Y M A S K G A V H Q L T R A L A A E W A G R G V R V N A L A P G Y V A T E M T L K M R E R P E L F E T W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T S
S S S
B T T T
B S S G G G T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . .

Sequence L D M T P M G R C G E P S E I A A A A L F L A S P A A S Y V T G A I L A V D G G Y T V W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S
B
S G G G T T
S
S T T G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	Y	R	T	V	F	R	L	D	G	A	C	A	A	V	T	G	A	G	S	G	I	G	L	E	I	C	R	A	F	A	A	S	G	A	R	L	I	L	I	D	R	E	A	A	A	L	D	R	A	A	Q	E	L	G	A	A	V	A	A	R	I	V	A	D	V	T	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	T	T			T	T							T	T	T	S													T	T								S													G	G	G									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	A	M	T	A	A	A	A	E	A	E	A	V	A	P	V	S	I	L	V	N	S	A	G	I	A	R	L	H	D	A	L	E	T	D	D	A	T	W	R	Q	V	M	A	V	N	V	D	G	M	F	W	A	S	R	A	F	G	R	A	M	V	A	R	G	A	G	A	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S															B		G	G	G														T																	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	L	G	S	M	S	G	T	I	V	N	R	P	Q	F	A	S	S	Y	M	A	S	K	G	A	V	H	Q	L	T	R	A	L	A	A	E	W	A	G	R	G	V	R	V	N	A	L	A	P	G	Y	V	A	T	E	M	T	L	K	M	R	E	R	P	E	L	F	E	T	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G	T	S			S	S	S		B																							T	T	T											B	S	S	G	G	G					T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Sequence	L	D	M	T	P	M	G	R	C	G	E	P	S	E	I	A	A	A	A	L	F	L	A	S	P	A	A	S	Y	V	T	G	A	I	L	A	V	D	G	G	Y	T	V	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T		T	T		S		B														S	G	G	G	T	T			S						S	T	T	G	G	G