Email l.a.kelley@imperial.ac.uk Description P32711 Date Thu Jan 5 11:50:30 GMT 2012 Unique Job ID d3229b40593ee259

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2hl7A_ 100.0 44 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 2 c2kw0A_ 100.0 43 PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli 3 d1pbya1 73.5 15 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 4 c2qsrA_ 66.4 17 PDB header:transcription Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of c-terminal domain of transcription-repair2 coupling factor 5 d2eyqa6 62.8 37 Fold:TRCF domain-like Superfamily:TRCF domain-like Family:TRCF domain 6 c3omdB_ 62.2 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum 7 c2c4rL_ 61.0 18 PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e 8 d1r5ya_ 59.8 16 Fold:TIM beta/alpha-barrel Superfamily:tRNA-guanine transglycosylase Family:tRNA-guanine transglycosylase 9 c2x48B_ 54.4 9 PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1 10 c2bpbB_ 54.1 17 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 11 c3lm3A_ 52.1 27 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative glycoside hydrolase/deacetylase2 (bdi_3119) from parabacteroides distasonis at 1.44 a resolution 12 d1jmxa1 46.9 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 13 c3d3mB_ 46.4 6 PDB header:translation Chain: B: PDB Molecule:eukaryotic translation initiation factor 4 gamma PDBTitle: the crystal structure of the c-terminal region of death2 associated protein 5(dap5) 14 d1fs1b1 42.6 32 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 15 d1fs2b1 40.6 32 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 16 d1ug3a2 39.1 11 Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:MIF4G domain-like 17 c1iq8B_ 38.6 38 PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii 18 d1iq8a1 38.2 20 Fold:TIM beta/alpha-barrel Superfamily:tRNA-guanine transglycosylase Family:tRNA-guanine transglycosylase 19 d1jm7a_ 37.1 21 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 20 d1nexa1 35.8 21 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 21 c2ashB_ not modelled 35.5 25 PDB header:transferase Chain: B: PDB Molecule:queuine trna-ribosyltransferase; PDBTitle: crystal structure of queuine trna-ribosyltransferase (ec 2.4.2.29)2 (trna-guanine (tm1561) from thermotoga maritima at 1.90 a resolution 22 d1ef4a_ not modelled 35.4 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 23 c2jq5A_ not modelled 35.1 14 PDB header:structural genomics Chain: A: PDB Molecule:sec-c motif; PDBTitle: solution structure of rpa3114, a sec-c motif containing2 protein from rhodopseudomonas palustris; northeast3 structural genomics consortium target rpt5 / ontario4 center for structural proteomics target rp3097 24 d6paxa1 not modelled 33.7 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 25 c2eyqA_ not modelled 32.9 33 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor 26 c1u78A_ not modelled 30.8 14 PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposable element tc3 transposase; PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna 27 c3floD_ not modelled 29.1 21 PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit 28 d2gmga1 not modelled 28.6 42 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 29 d1wgna_ not modelled 27.0 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 30 c2opfA_ not modelled 26.3 67 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 31 c3b40A_ not modelled 25.1 17 PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidase; PDBTitle: crystal structure of the probable dipeptidase pvdm from2 pseudomonas aeruginosa 32 d1k78a1 not modelled 24.4 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 33 d1p7ia_ not modelled 23.9 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 34 c3hosA_ not modelled 23.3 21 PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg 35 c2qeuA_ not modelled 22.7 8 PDB header:lyase Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase; PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution 36 c3llkA_ not modelled 22.7 28 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfhydryl oxidase 1; PDBTitle: sulfhydryl oxidase fragment of human qsox1 37 c3iz6X_ not modelled 22.7 24 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 38 c3g2bA_ not modelled 21.9 8 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 39 d1od6a_ not modelled 21.0 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 40 d2ovra1 not modelled 20.9 32 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 41 d1qxfa_ not modelled 20.5 18 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e 42 c2ragB_ not modelled 20.0 16 PDB header:hydrolase Chain: B: PDB Molecule:dipeptidase; PDBTitle: crystal structure of aminohydrolase from caulobacter crescentus 43 c3b9bA_ not modelled 20.0 12 PDB header:hydrolase Chain: A: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: structure of the e2 beryllium fluoride complex of the serca2 ca2+-atpase 44 d1eb7a2 not modelled 20.0 22 Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase 45 c1ug3A_ not modelled 19.8 13 PDB header:translation Chain: A: PDB Molecule:eukaryotic protein synthesis initiation factor PDBTitle: c-terminal portion of human eif4gi 46 c2jnhA_ not modelled 19.7 13 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 47 d1p91a_ not modelled 19.4 31 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 48 d1odfa_ not modelled 19.3 26 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 49 d2ga1a1 not modelled 18.9 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Alr1493-like 50 c1nexC_ not modelled 18.7 21 PDB header:ligase, cell cycle Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 51 c1ztbA_ not modelled 18.7 15 PDB header:ligase Chain: A: PDB Molecule:chorismate synthase; PDBTitle: crystal structure of chorismate synthase from mycobacterium2 tuberculosis 52 c3o0rC_ not modelled 18.6 13 PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment 53 c2pmzN_ not modelled 18.2 18 PDB header:translation, transferase Chain: N: PDB Molecule:dna-directed rna polymerase subunit n; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 54 c2jr6A_ not modelled 18.0 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 55 c3lrqB_ not modelled 18.0 30 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim37; PDBTitle: crystal structure of the u-box domain of human ubiquitin-2 protein ligase (e3), northeast structural genomics3 consortium target hr4604d. 56 c2js4A_ not modelled 17.9 44 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 57 c2jvwA_ not modelled 17.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of uncharacterized protein q5e7h1 from vibrio2 fischeri. northeast structural genomics target vfr117 58 c2xzmO_ not modelled 17.2 10 PDB header:ribosome Chain: O: PDB Molecule:rps13e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 59 d1y0ua_ not modelled 17.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 60 d2cwqa1 not modelled 17.0 13 Fold:AhpD-like Superfamily:AhpD-like Family:TTHA0727-like 61 c3axjB_ not modelled 16.9 7 PDB header:dna binding protein Chain: B: PDB Molecule:translin associated factor x, isoform b; PDBTitle: high resolution crystal structure of c3po 62 c2p1nD_ not modelled 16.3 32 PDB header:signaling protein Chain: D: PDB Molecule:skp1-like protein 1a; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase 63 d1lv3a_ not modelled 16.1 22 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 64 c2ecgA_ not modelled 16.0 9 PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4; PDBTitle: solution structure of the ring domain of the baculoviral2 iap repeat-containing protein 4 from homo sapiens 65 d2lfba_ not modelled 16.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 66 d1sxjd1 not modelled 15.3 14 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 67 c3itcA_ not modelled 15.2 4 PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol 68 d2gmya1 not modelled 15.2 14 Fold:AhpD-like Superfamily:AhpD-like Family:Atu0492-like 69 d2c0sa1 not modelled 14.9 43 Fold:ROP-like Superfamily:BAS1536-like Family:BAS1536-like 70 c3s93B_ not modelled 14.5 12 PDB header:transcription Chain: B: PDB Molecule:tudor domain-containing protein 5; PDBTitle: crystal structure of conserved motif in tdrd5 71 d1itua_ not modelled 14.5 12 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Renal dipeptidase 72 c3a44D_ not modelled 14.5 36 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 73 c2d9sA_ not modelled 14.4 10 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 74 d1dl6a_ not modelled 14.4 25 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 75 c3izbX_ not modelled 14.3 33 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein rps27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 76 c3lpeF_ not modelled 14.3 24 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 77 c1b6aA_ not modelled 14.3 21 PDB header:angiogenesis inhibitor Chain: A: PDB Molecule:methionine aminopeptidase; PDBTitle: human methionine aminopeptidase 2 complexed with tnp-470 78 d2c2vv1 not modelled 14.2 13 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 79 c3pjaK_ not modelled 13.9 13 PDB header:hydrolase Chain: K: PDB Molecule:translin-associated protein x; PDBTitle: crystal structure of human c3po complex 80 d2cqxa1 not modelled 13.8 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 81 c3qw4B_ not modelled 13.8 15 PDB header:transferase, lyase Chain: B: PDB Molecule:ump synthase; PDBTitle: structure of leishmania donovani ump synthase 82 c1dl0A_ not modelled 13.7 46 PDB header:toxin Chain: A: PDB Molecule:j-atracotoxin-hv1c; PDBTitle: solution structure of the insecticidal neurotoxin j-2 atracotoxin-hv1c 83 d1dl0a_ not modelled 13.7 46 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 84 d2jnya1 not modelled 13.6 33 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 85 c2xzm6_ not modelled 13.4 47 PDB header:ribosome Chain: 6: PDB Molecule:rps27e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 86 c1nl0G_ not modelled 13.3 50 PDB header:immune system Chain: G: PDB Molecule:factor ix; PDBTitle: crystal structure of human factor ix gla domain in complex2 of an inhibitory antibody, 10c12 87 d1jgga_ not modelled 13.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 88 c3l6aA_ not modelled 13.0 5 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 4 gamma 2; PDBTitle: crystal structure of the c-terminal region of human p97 89 d1o6ba_ not modelled 12.9 8 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 90 c3fdgA_ not modelled 12.6 16 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidase ac. metallo peptidase. merops family m19; PDBTitle: the crystal structure of the dipeptidase ac, metallo peptidase. merops2 family m19 91 d1xkpa1 not modelled 12.3 14 Fold:Type III secretion system domain Superfamily:Type III secretion system domain Family:LcrE-like 92 c2ao9H_ not modelled 12.2 13 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:phage protein; PDBTitle: structural genomics, the crystal structure of a phage protein2 (phbc6a51) from bacillus cereus atcc 14579 93 c2kpiA_ not modelled 12.1 44 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 94 d2ao9a1 not modelled 12.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Nanomeric phage protein-like 95 c1ee8A_ not modelled 11.9 57 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 96 d1d8ja_ not modelled 11.9 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:The central core domain of TFIIE beta 97 c3bg3B_ not modelled 11.9 10 PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial; PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus) 98 c2do6A_ not modelled 11.9 15 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 99 d1vnda_ not modelled 11.8 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain