Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	V	I	K	K	L	D	V	V	T	Q	V	C	P	F	P	L	I	E	A	K	A	A	L	A	E	M	V	S	G	D	E	L	V	I	E	F	D	C	T	Q	A	T	E	A	I	P	Q	W	A	A	E	E	G	H	A	I	T	D	Y
Secondary structure
SS confidence
Disorder		?	?	?																						?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Sequence		Q	Q	I	G	D	A	A	W	S	I	T	V	Q	K	A
Secondary structure
SS confidence
Disorder																?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jdq chain A Region: 2 - 74 Aligned: 73 Modelled: 73 Confidence: 99.9% Identity: 34% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 1je3 chain A Region: 3 - 74 Aligned: 71 Modelled: 71 Confidence: 99.8% Identity: 31% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 1dcj chain A Region: 3 - 74 Aligned: 71 Modelled: 72 Confidence: 99.8% Identity: 23% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 3hz7 chain A Region: 5 - 75 Aligned: 70 Modelled: 71 Confidence: 99.8% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a Phyre2 PDB 1pav chain A Region: 1 - 75 Aligned: 74 Modelled: 74 Confidence: 99.8% Identity: 19% Fold: IF3-like Superfamily: SirA-like Family: SirA-like Phyre2 PDB 1yg0 chain A Region: 2 - 58 Aligned: 57 Modelled: 57 Confidence: 94.8% Identity: 19% PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori Phyre2 PDB 1cc8 chain A Region: 1 - 63 Aligned: 60 Modelled: 62 Confidence: 92.8% Identity: 13% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 1p6t chain A domain 1 Region: 3 - 58 Aligned: 56 Modelled: 56 Confidence: 89.4% Identity: 16% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2qif chain A domain 1 Region: 1 - 57 Aligned: 57 Modelled: 57 Confidence: 89.4% Identity: 19% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2ofh chain X Region: 1 - 57 Aligned: 57 Modelled: 57 Confidence: 88.9% Identity: 16% PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form Phyre2 PDB 2kt2 chain A Region: 3 - 57 Aligned: 55 Modelled: 55 Confidence: 88.4% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase Phyre2 PDB 1y3k chain A Region: 5 - 66 Aligned: 61 Modelled: 62 Confidence: 88.0% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein Phyre2 PDB 2ldi chain A Region: 1 - 57 Aligned: 57 Modelled: 57 Confidence: 87.8% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant Phyre2 PDB 2l3m chain A Region: 1 - 57 Aligned: 57 Modelled: 56 Confidence: 87.8% Identity: 14% PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames Phyre2 PDB 1kvj chain A Region: 1 - 58 Aligned: 58 Modelled: 58 Confidence: 87.6% Identity: 10% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2d9i chain A domain 1 Region: 5 - 73 Aligned: 66 Modelled: 69 Confidence: 85.2% Identity: 14% Fold: IF3-like Superfamily: SMR domain-like Family: Smr domain Phyre2 PDB 1p6t chain A domain 2 Region: 3 - 65 Aligned: 62 Modelled: 63 Confidence: 84.3% Identity: 10% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 PDB 2kyz chain A Region: 2 - 63 Aligned: 59 Modelled: 62 Confidence: 83.9% Identity: 19% PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima Phyre2 PDB 2gcf chain A Region: 3 - 57 Aligned: 55 Modelled: 55 Confidence: 81.9% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form Phyre2 PDB 1mwz chain A Region: 2 - 57 Aligned: 55 Modelled: 55 Confidence: 81.0% Identity: 11% Fold: Ferredoxin-like Superfamily: HMA, heavy metal-associated domain Family: HMA, heavy metal-associated domain Phyre2 1 d1jdqa_ 2 d1je3a_ 3 d1dcja_ 4 c3hz7A_ 5 d1pava_ 6 c1yg0A_ 7 d1cc8a_ 8 d1p6ta1 9 d2qifa1 10 c2ofhX_ 11 c2kt2A_ 12 c1y3kA_ 13 c2ldiA_ 14 c2l3mA_ 15 d1kvja_ 16 d2d9ia1 17 d1p6ta2 18 c2kyzA_ 19 c2gcfA_ 20 d1mwza_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1jdqa_ 99.9 34 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 2 d1je3a_ 99.8 31 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 3 d1dcja_ 99.8 23 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 4 c3hz7A_ 99.8 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the sira-like protein (dsy4693) from2 desulfitobacterium hafniense, northeast structural genomics3 consortium target dhr2a 5 d1pava_ 99.8 19 Fold:IF3-like Superfamily:SirA-like Family:SirA-like 6 c1yg0A_ 94.8 19 PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori 7 d1cc8a_ 92.8 13 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 8 d1p6ta1 89.4 16 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 9 d2qifa1 89.4 19 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 10 c2ofhX_ 88.9 16 PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form 11 c2kt2A_ 88.4 18 PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase 12 c1y3kA_ 88.0 10 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein 13 c2ldiA_ 87.8 18 PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant 14 c2l3mA_ 87.8 14 PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames 15 d1kvja_ 87.6 10 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 16 d2d9ia1 85.2 14 Fold:IF3-like Superfamily:SMR domain-like Family:Smr domain 17 d1p6ta2 84.3 10 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 18 c2kyzA_ 83.9 19 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima 19 c2gcfA_ 81.9 13 PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form 20 d1mwza_ 81.0 11 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 21 c1yjrA_ not modelled 80.2 19 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein 22 d1sb6a_ not modelled 80.0 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 23 d1q8la_ not modelled 79.1 14 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 24 d2ggpb1 not modelled 78.2 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 25 d2aw0a_ not modelled 77.0 8 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 26 c3dxsX_ not modelled 76.5 18 PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase 27 d1cpza_ not modelled 75.0 18 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 28 c2vkcA_ not modelled 73.0 14 PDB header:hydrolase Chain: A: PDB Molecule:nedd4-binding protein 2; PDBTitle: solution structure of the b3bp smr domain 29 d1s6ua_ not modelled 69.9 15 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 30 d1osda_ not modelled 68.6 20 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 31 c2kkhA_ not modelled 68.5 17 PDB header:metal transport Chain: A: PDB Molecule:putative heavy metal transporter; PDBTitle: structure of the zinc binding domain of the atpase hma4 32 c3qwuA_ not modelled 68.2 12 PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: putative atp-dependent dna ligase from aquifex aeolicus. 33 d1afia_ not modelled 67.3 28 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 34 c2k2pA_ not modelled 63.0 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183 35 c2zqeA_ not modelled 62.2 16 PDB header:dna binding protein Chain: A: PDB Molecule:muts2 protein; PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2 36 c2rogA_ not modelled 61.5 22 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 37 c3q87B_ not modelled 51.0 7 PDB header:transferase activator/transferase Chain: B: PDB Molecule:n6 adenine specific dna methylase; PDBTitle: structure of eukaryotic translation termination complex2 methyltransferase mtq2-trm112 38 c3grzA_ not modelled 46.9 12 PDB header:transferase Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase; PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus 39 c2aivA_ not modelled 41.8 9 PDB header:transport protein Chain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116; PDBTitle: multiple conformations in the ligand-binding site of the2 yeast nuclear pore targeting domain of nup116p 40 c3ntaA_ not modelled 41.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: structure of the shewanella loihica pv-4 nadh-dependent persulfide2 reductase 41 c3dlcA_ not modelled 38.0 18 PDB header:transferase Chain: A: PDB Molecule:putative s-adenosyl-l-methionine-dependent PDBTitle: crystal structure of a putative s-adenosyl-l-methionine-dependent2 methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 a3 resolution 42 c2ga7A_ not modelled 36.0 11 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the copper(i) form of the third metal-2 binding domain of atp7a protein (menkes disease protein) 43 c3nf5A_ not modelled 34.4 9 PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup116; PDBTitle: crystal structure of the c-terminal domain of nuclear pore complex2 component nup116 from candida glabrata 44 c1ko6A_ not modelled 33.6 14 PDB header:transferase Chain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of c-terminal autoproteolytic domain of2 nucleoporin nup98 45 d1jvaa3 not modelled 31.0 13 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 46 c3fryB_ not modelled 30.8 13 PDB header:hydrolase Chain: B: PDB Molecule:probable copper-exporting p-type atpase a; PDBTitle: crystal structure of the copa c-terminal metal binding domain 47 c2q5xA_ not modelled 30.0 14 PDB header:protein transport Chain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of the c-terminal domain of hnup98 48 c3icrA_ not modelled 28.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a-disulfide reductase; PDBTitle: crystal structure of oxidized bacillus anthracis coadr-rhd 49 c2kngA_ not modelled 27.2 32 PDB header:dna binding protein Chain: A: PDB Molecule:protein lsr2; PDBTitle: solution structure of c-domain of lsr2 50 c3dh0B_ not modelled 26.9 14 PDB header:transferase Chain: B: PDB Molecule:sam dependent methyltransferase; PDBTitle: crystal structure of a sam dependent methyltransferase from2 aquifex aeolicus 51 c2rmlA_ not modelled 26.3 9 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting p-type atpase copa; PDBTitle: solution structure of the n-terminal soluble domains of2 bacillus subtilis copa 52 d2nxca1 not modelled 26.1 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Ribosomal protein L11 methyltransferase PrmA 53 c2ropA_ not modelled 25.6 5 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of domains 3 and 4 of human atp7b 54 c2ip2B_ not modelled 24.4 16 PDB header:transferase Chain: B: PDB Molecule:probable phenazine-specific methyltransferase; PDBTitle: structure of the pyocyanin biosynthetic protein phzm 55 c3kepA_ not modelled 24.3 12 PDB header:protein transport, rna binding protein Chain: A: PDB Molecule:nucleoporin nup145; PDBTitle: crystal structure of the autoproteolytic domain from the2 nuclear pore complex component nup145 from saccharomyces3 cerevisiae 56 c2ziuA_ not modelled 23.8 9 PDB header:hydrolase Chain: A: PDB Molecule:mus81 protein; PDBTitle: crystal structure of the mus81-eme1 complex 57 d1fe0a_ not modelled 22.2 9 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 58 c3e05B_ not modelled 20.0 13 PDB header:transferase Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating); PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15 59 d2cc0a1 not modelled 19.9 18 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 60 c2c1iA_ not modelled 18.6 8 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant. 61 d1l3ia_ not modelled 18.3 5 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Precorrin-6Y methyltransferase (CbiT) 62 d2obba1 not modelled 18.1 9 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 63 c3c5yD_ not modelled 18.0 29 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 64 c2pwyB_ not modelled 17.6 14 PDB header:transferase Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a m1a58 trna methyltransferase 65 c3cg6A_ not modelled 17.5 16 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible 45 gamma; PDBTitle: crystal structure of gadd45 gamma 66 d1qupa2 not modelled 17.3 17 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 67 c3gwzB_ not modelled 16.4 12 PDB header:transferase Chain: B: PDB Molecule:mmcr; PDBTitle: structure of the mitomycin 7-o-methyltransferase mmcr 68 c2ew9A_ not modelled 16.4 14 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of apowln5-6 69 c2aj1A_ not modelled 16.3 12 PDB header:hydrolase Chain: A: PDB Molecule:probable cadmium-transporting atpase; PDBTitle: solution structure of apocada 70 d1wj4a_ not modelled 15.0 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 71 c3d00A_ not modelled 14.7 14 PDB header:metal binding protein Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e; PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution 72 d1a8pa2 not modelled 14.7 9 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 73 d1j23a_ not modelled 14.4 8 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XPF/Rad1/Mus81 nuclease 74 c3p9kD_ not modelled 14.3 21 PDB header:transferase Chain: D: PDB Molecule:caffeic acid o-methyltransferase; PDBTitle: crystal structure of perennial ryegrass lpomt1 complexed with s-2 adenosyl-l-homocysteine and coniferaldehyde 75 d2b3ta1 not modelled 13.9 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:N5-glutamine methyltransferase, HemK 76 c1kyzC_ not modelled 13.9 9 PDB header:transferase Chain: C: PDB Molecule:caffeic acid 3-o-methyltransferase; PDBTitle: crystal structure analysis of caffeic acid/5-hydroxyferulic2 acid 3/5-o-methyltransferase ferulic acid complex 77 c3e8sA_ not modelled 13.6 23 PDB header:transferase Chain: A: PDB Molecule:putative sam dependent methyltransferase; PDBTitle: crystal structure of putative sam dependent methyltransferase in2 complex with sah (np_744700.1) from pseudomonas putida kt2440 at 2.103 a resolution 78 d1h8ca_ not modelled 13.6 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 79 c2eseA_ not modelled 13.5 16 PDB header:protein/rna complex Chain: A: PDB Molecule:vts1p; PDBTitle: structure of the sam domain of vts1p in complex with rna 80 d2c1ia1 not modelled 13.1 8 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 81 c3lteH_ not modelled 13.0 9 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 82 d1ny1a_ not modelled 12.9 8 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 83 c3njrB_ not modelled 12.5 12 PDB header:transferase Chain: B: PDB Molecule:precorrin-6y methylase; PDBTitle: crystal structure of c-terminal domain of precorrin-6y c5,15-2 methyltransferase from rhodobacter capsulatus 84 c3fpnB_ not modelled 12.4 5 PDB header:dna binding protein Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction PDBTitle: crystal structure of uvra-uvrb interaction domains 85 d2j13a1 not modelled 12.0 17 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 86 c2b6gA_ not modelled 11.8 17 PDB header:rna binding protein Chain: A: PDB Molecule:vts1p; PDBTitle: rna recognition by the vts1 sam domain 87 d1dusa_ not modelled 11.4 8 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical protein MJ0882 88 d1o54a_ not modelled 11.1 9 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 89 d2naca2 not modelled 11.1 15 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 90 d2bgwa2 not modelled 10.9 12 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XPF/Rad1/Mus81 nuclease 91 c3onoA_ not modelled 10.5 17 PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus 92 c2ppwA_ not modelled 10.5 13 PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae 93 d1jg5a_ not modelled 10.4 8 Fold:GTP cyclohydrolase I feedback regulatory protein, GFRP Superfamily:GTP cyclohydrolase I feedback regulatory protein, GFRP Family:GTP cyclohydrolase I feedback regulatory protein, GFRP 94 c3mtiA_ not modelled 10.2 15 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a 95 d2cr5a1 not modelled 10.1 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:UBX domain 96 d2b2na1 not modelled 9.6 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 97 c3hm2G_ not modelled 9.6 20 PDB header:transferase Chain: G: PDB Molecule:precorrin-6y c5,15-methyltransferase; PDBTitle: crystal structure of putative precorrin-6y c5,15-2 methyltransferase targeted domain from corynebacterium3 diphtheriae 98 c3id5F_ not modelled 9.5 7 PDB header:transferase/ribosomal protein/rna Chain: F: PDB Molecule:fibrillarin-like rrna/trna 2'-o-methyltransferase; PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp assembled with2 nop5, fibrillarin, l7ae and a split half c/d rna 99 c2kyrA_ not modelled 9.5 25 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0