PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3id5F_

Fold library id	PDB Header	Molecule	Title
c3id5F_	PDB header: transferase/ribosomal protein/rna	Chain: F: PDB Molecule: fibrillarin-like rrna/trna 2'-o-	PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp2 assembled with nop5, fibrillarin, l7ae and a split half c/d3 rna

Links to external resources
Added to library: Sat Aug 28 16:02:55 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I T V K Q T N M E N I Y E C E F N D G S F R L C T R N L V P N F N V Y G E R L I K Y E G V E Y R E W N A F R S K L A G A I L K G L K T N P I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
T T
S S
S
S S S
T T
T T T
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R K G T K V L Y L G A A S G T T I S H V S D I I E L N G K A Y G V E F S P R V V R E L L L V A Q R R P N I F P L L A D A R F P Q S Y K S V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
T T S
T T S
T T
T T
G G G T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E N V D V L Y V D I A Q P D Q T D I A I Y N A K F F L K V N G D M L L V I K A V T K D P K E I Y K T E V E K L E N S N F E T I Q I I N L D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S S S S T T T T T
T T

. . . . . . . . . 220 . . .

Sequence Y D K D H A I V L S K Y K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	T	V	K	Q	T	N	M	E	N	I	Y	E	C	E	F	N	D	G	S	F	R	L	C	T	R	N	L	V	P	N	F	N	V	Y	G	E	R	L	I	K	Y	E	G	V	E	Y	R	E	W	N	A	F	R	S	K	L	A	G	A	I	L	K	G	L	K	T	N	P	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	T	T							T	T										S	S		S				S	S	S						T	T								T	T	T									T	T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	K	G	T	K	V	L	Y	L	G	A	A	S	G	T	T	I	S	H	V	S	D	I	I	E	L	N	G	K	A	Y	G	V	E	F	S	P	R	V	V	R	E	L	L	L	V	A	Q	R	R	P	N	I	F	P	L	L	A	D	A	R	F	P	Q	S	Y	K	S	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T							T		T	T	S												T	T	S																							T	T								T	T		G	G	G	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	N	V	D	V	L	Y	V	D	I	A	Q	P	D	Q	T	D	I	A	I	Y	N	A	K	F	F	L	K	V	N	G	D	M	L	L	V	I	K	A	V	T	K	D	P	K	E	I	Y	K	T	E	V	E	K	L	E	N	S	N	F	E	T	I	Q	I	I	N	L	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S		T	T																													S	S	S	S	S	T	T								T	T	T										T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	Y	D	K	D	H	A	I	V	L	S	K	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S	S