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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3nf5A_ | PDB header: protein transport | Chain: A: PDB Molecule: nucleoporin nup100; | PDBTitle: crystal structure of the c-terminal domain of nuclear pore complex2 component nup100 from candida glabrata |
Added to library: Sat Aug 28 23:42:44 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | S | L | D | G | I | D | D | L | E | F | V | D | E | N | Y | Y | I | S | P | S | L | D | T | L | A | T | L | S | K | Y | E | I | Q | K | V | E | N | L | V | V | G | N | K | Q | Y | G | K | I | E | F | L | D | P | V | D | L | S | D | I | P | L | G | S | I | C | D | D | L | V | V |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | B | T | T | B | S | ![]() | ![]() | ![]() | ![]() | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | S | B | S | ![]() | ![]() | ![]() | ![]() | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | B | T | T | G | G | G | T | B | T | T | T | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | F | Q | P | X | S | V | L | L | Y | N | N | S | T | N | V | P | E | K | G | K | G | L | N | V | R | A | R | I | S | C | Y | N | C | Y | P | L | D | K | S | T | R | K | P | I | K | D | P | N | H | R | I | X | E | R | Y | S | E | K | L | K | K | I | P | H | T | H | F | E | S | Y |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | S | T | T | S | T | T | S | T | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | S | B | T | T | T | B | T | T | S | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | ||
Sequence | D | P | A | S | G | T | Y | C | F | T | V | D | H | A | L | E | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | T | T | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | T | T |
Download: | PDB structure | FASTA sequence |
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