Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76145
DateThu Jan 5 12:19:38 GMT 2012
Unique Job IDc1aba0699df13f54

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2p35A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 2-methyltransferase;
PDBTitle: crystal structure of trans-aconitate methyltransferase from2 agrobacterium tumefaciens
Confidence and coverage
Confidence:100.0% Coverage: 97%
244 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARITG
Secondary structure 
SS confidence 
Disorder  ?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  IDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVSLL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  NPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDILSEAGCEVDIWR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  TTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLEEQYPLQENGQILLA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250..
Sequence  FPRLFIVARRME
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2p35 chain A

3D model

Region: 6 - 250
Aligned: 244
Modelled: 245
Confidence: 100.0%
Identity: 44%
PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 2-methyltransferase;
PDBTitle: crystal structure of trans-aconitate methyltransferase from2 agrobacterium tumefaciens

Phyre2

PDB 3ccf chain B

3D model

Region: 20 - 252
Aligned: 229
Modelled: 231
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:cyclopropane-fatty-acyl-phospholipid synthase;
PDBTitle: crystal structure of putative methyltransferase (yp_321342.1) from2 anabaena variabilis atcc 29413 at 1.90 a resolution

Phyre2

PDB 3g5t chain A

3D model

Region: 2 - 251
Aligned: 249
Modelled: 250
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast

Phyre2

PDB 2yr0 chain A

3D model

Region: 17 - 249
Aligned: 231
Modelled: 233
Confidence: 99.9%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha0223;
PDBTitle: crystal structure of hypothetical methyltransferase ttha0223 from2 thermus thermophilus hb8

Phyre2

PDB 1vl5 chain B

3D model

Region: 20 - 251
Aligned: 221
Modelled: 227
Confidence: 99.9%
Identity: 12%
PDB header:transferase
Chain: B: PDB Molecule:unknown conserved protein bh2331;
PDBTitle: crystal structure of a putative methyltransferase (bh2331) from2 bacillus halodurans c-125 at 1.95 a resolution

Phyre2

PDB 3mgg chain B

3D model

Region: 14 - 251
Aligned: 237
Modelled: 238
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of methyl transferase from methanosarcina2 mazei

Phyre2

PDB 1vl5 chain A

3D model

Region: 20 - 251
Aligned: 221
Modelled: 232
Confidence: 99.9%
Identity: 12%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: UbiE/COQ5-like

Phyre2

PDB 3bkx chain B

3D model

Region: 10 - 239
Aligned: 229
Modelled: 229
Confidence: 99.9%
Identity: 11%
PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of cyclopropane-fatty-acyl-phospholipid synthase-2 like protein (yp_807781.1) from lactobacillus casei atcc 334 at 1.853 a resolution

Phyre2

PDB 2o57 chain A domain 1

3D model

Region: 8 - 252
Aligned: 230
Modelled: 240
Confidence: 99.9%
Identity: 15%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Mycolic acid cyclopropane synthase

Phyre2

PDB 1jqe chain A

3D model

Region: 6 - 249
Aligned: 236
Modelled: 241
Confidence: 99.9%
Identity: 12%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Histamine methyltransferase

Phyre2

PDB 3bus chain B

3D model

Region: 9 - 251
Aligned: 228
Modelled: 243
Confidence: 99.9%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of rebm

Phyre2

PDB 1xxl chain A

3D model

Region: 23 - 252
Aligned: 220
Modelled: 227
Confidence: 99.9%
Identity: 11%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: UbiE/COQ5-like

Phyre2

PDB 2fk8 chain A

3D model

Region: 16 - 251
Aligned: 226
Modelled: 236
Confidence: 99.9%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine

Phyre2

PDB 1nkv chain A

3D model

Region: 17 - 249
Aligned: 221
Modelled: 225
Confidence: 99.9%
Identity: 13%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Hypothetical Protein YjhP

Phyre2

PDB 2fk8 chain A domain 1

3D model

Region: 16 - 252
Aligned: 227
Modelled: 237
Confidence: 99.9%
Identity: 12%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Mycolic acid cyclopropane synthase

Phyre2

PDB 3ujc chain A

3D model

Region: 18 - 250
Aligned: 218
Modelled: 227
Confidence: 99.8%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:phosphoethanolamine n-methyltransferase;
PDBTitle: phosphoethanolamine methyltransferase mutant (h132a) from plasmodium2 falciparum in complex with phosphocholine

Phyre2

PDB 3cc8 chain A

3D model

Region: 22 - 252
Aligned: 202
Modelled: 204
Confidence: 99.8%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a putative methyltransferase (bce_1332) from2 bacillus cereus atcc 10987 at 1.64 a resolution

Phyre2

PDB 1kpg chain A

3D model

Region: 12 - 250
Aligned: 229
Modelled: 239
Confidence: 99.8%
Identity: 13%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Mycolic acid cyclopropane synthase

Phyre2

PDB 3e7p chain A

3D model

Region: 17 - 250
Aligned: 218
Modelled: 234
Confidence: 99.8%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482

Phyre2

PDB 1kpi chain A

3D model

Region: 16 - 250
Aligned: 225
Modelled: 235
Confidence: 99.8%
Identity: 13%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: Mycolic acid cyclopropane synthase

Phyre2
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c2p35A_
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c3ccfB_
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c3g5tA_
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c2yr0A_
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c1vl5B_
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c3mggB_
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d1vl5a_
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c3bkxB_
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d2o57a1
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d1jqea_
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c3busB_
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d1xxla_
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c2fk8A_
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d1nkva_
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d2fk8a1
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c3ujcA_
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c3cc8A_
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d1kpga_
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c3e7pA_
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d1kpia_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2p35A_
100.0 44 PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 2-methyltransferase;
PDBTitle: crystal structure of trans-aconitate methyltransferase from2 agrobacterium tumefaciens
2c3ccfB_
100.0 21 PDB header:transferase
Chain: B: PDB Molecule:cyclopropane-fatty-acyl-phospholipid synthase;
PDBTitle: crystal structure of putative methyltransferase (yp_321342.1) from2 anabaena variabilis atcc 29413 at 1.90 a resolution
3c3g5tA_
99.9 19 PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast
4c2yr0A_
99.9 13 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha0223;
PDBTitle: crystal structure of hypothetical methyltransferase ttha0223 from2 thermus thermophilus hb8
5c1vl5B_
99.9 12 PDB header:transferase
Chain: B: PDB Molecule:unknown conserved protein bh2331;
PDBTitle: crystal structure of a putative methyltransferase (bh2331) from2 bacillus halodurans c-125 at 1.95 a resolution
6c3mggB_
99.9 19 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of methyl transferase from methanosarcina2 mazei
7d1vl5a_
99.9 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
8c3bkxB_
99.9 11 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of cyclopropane-fatty-acyl-phospholipid synthase-2 like protein (yp_807781.1) from lactobacillus casei atcc 334 at 1.853 a resolution
9d2o57a1
99.9 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
10d1jqea_
99.9 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Histamine methyltransferase
11c3busB_
99.9 18 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of rebm
12d1xxla_
99.9 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
13c2fk8A_
99.9 12 PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine
14d1nkva_
99.9 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical Protein YjhP
15d2fk8a1
99.9 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
16c3ujcA_
99.8 17 PDB header:transferase
Chain: A: PDB Molecule:phosphoethanolamine n-methyltransferase;
PDBTitle: phosphoethanolamine methyltransferase mutant (h132a) from plasmodium2 falciparum in complex with phosphocholine
17c3cc8A_
99.8 15 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a putative methyltransferase (bce_1332) from2 bacillus cereus atcc 10987 at 1.64 a resolution
18d1kpga_
99.8 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
19c3e7pA_
99.8 18 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482
20d1kpia_
99.8 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
21c3egeA_
not modelled 99.8 10 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase from antibiotic biosynthesis
PDBTitle: crystal structure of putative methyltransferase from antibiotic2 biosynthesis pathway (yp_324569.1) from anabaena variabilis atcc3 29413 at 2.40 a resolution
22d1l1ea_
not modelled 99.8 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
23c3f4kA_
not modelled 99.8 14 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a probable methyltransferase from2 bacteroides thetaiotaomicron. northeast structural3 genomics target btr309.
24d1tpya_
not modelled 99.8 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
25c3dtnA_
not modelled 99.8 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative methyltransferase mm_2633;
PDBTitle: crystal structure of putative methyltransferase-mm_26332 from methanosarcina mazei .
26c3e23A_
not modelled 99.8 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rpa2492;
PDBTitle: crystal structure of the rpa2492 protein in complex with2 sam from rhodopseudomonas palustris, northeast structural3 genomics consortium target rpr299
27c3dlcA_
not modelled 99.8 17 PDB header:transferase
Chain: A: PDB Molecule:putative s-adenosyl-l-methionine-dependent
PDBTitle: crystal structure of a putative s-adenosyl-l-methionine-dependent2 methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 a3 resolution
28d2gh1a1
not modelled 99.8 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:BC2162-like
29c2gs9A_
not modelled 99.8 18 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein tt1324;
PDBTitle: crystal structure of tt1324 from thermus thermophilis hb8
30c3l8dA_
not modelled 99.8 19 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of methyltransferase from bacillus2 thuringiensis
31d2p7ia1
not modelled 99.8 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
32d1vlma_
not modelled 99.8 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
33c3e8sA_
not modelled 99.7 21 PDB header:transferase
Chain: A: PDB Molecule:putative sam dependent methyltransferase;
PDBTitle: crystal structure of putative sam dependent methyltransferase in2 complex with sah (np_744700.1) from pseudomonas putida kt2440 at 2.103 a resolution
34c3dliB_
not modelled 99.7 18 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of a sam dependent methyltransferase from2 archaeoglobus fulgidus
35c3ou7A_
not modelled 99.7 17 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: dhpi-sam-hep complex
36c2p7iB_
not modelled 99.7 17 PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a sam dependent methyl-transferase type 12 family2 protein (eca1738) from pectobacterium atrosepticum scri1043 at 1.74 a3 resolution
37d1p91a_
not modelled 99.7 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA methyltransferase RlmA
38d1im8a_
not modelled 99.7 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical protein HI0319 (YecO)
39c3mq2A_
not modelled 99.7 14 PDB header:transferase
Chain: A: PDB Molecule:16s rrna methyltransferase;
PDBTitle: crystal structure of 16s rrna methyltranferase kamb
40d2avna1
not modelled 99.7 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
41c3pfhD_
not modelled 99.7 20 PDB header:transferase
Chain: D: PDB Molecule:n-methyltransferase;
PDBTitle: x-ray crystal structure the n,n-dimethyltransferase tylm1 from2 streptomyces fradiae in complex with sah and dtdp-quip3n
42c3ocjA_
not modelled 99.7 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis
43c3dh0B_
not modelled 99.7 15 PDB header:transferase
Chain: B: PDB Molecule:sam dependent methyltransferase;
PDBTitle: crystal structure of a sam dependent methyltransferase from2 aquifex aeolicus
44c3ofkA_
not modelled 99.7 23 PDB header:transferase
Chain: A: PDB Molecule:nodulation protein s;
PDBTitle: crystal structure of n-methyltransferase nods from bradyrhizobium2 japonicum wm9 in complex with s-adenosyl-l-homocysteine (sah)
45d1xtpa_
not modelled 99.7 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
46c3hnrA_
not modelled 99.7 19 PDB header:transferase
Chain: A: PDB Molecule:probable methyltransferase bt9727_4108;
PDBTitle: crystal structure of a probable methyltransferase2 bt9727_4108 from bacillus thuringiensis subsp. northeast3 structural genomics consortium target id bur219
47c3h2bB_
not modelled 99.7 19 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of the sam-dependent methyltransferase2 cg3271 from corynebacterium glutamicum in complex with s-3 adenosyl-l-homocysteine and pyrophosphate. northeast4 structural genomics consortium target cgr113a
48d1kyza2
not modelled 99.7 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Plant O-methyltransferase, C-terminal domain
49d1wzna1
not modelled 99.7 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CAC2371-like
50c3ndjA_
not modelled 99.7 15 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
51c3bgvC_
not modelled 99.7 17 PDB header:transferase
Chain: C: PDB Molecule:mrna cap guanine-n7 methyltransferase;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase2 in complex with sah
52c3g5lA_
not modelled 99.7 17 PDB header:transferase
Chain: A: PDB Molecule:putative s-adenosylmethionine dependent
PDBTitle: crystal structure of putative s-adenosylmethionine2 dependent methyltransferase from listeria monocytogenes
53c3bkwB_
not modelled 99.7 18 PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine dependent methyltransferase;
PDBTitle: crystal structure of s-adenosylmethionine dependent methyltransferase2 (np_104914.1) from mesorhizobium loti at 1.60 a resolution
54c3lstB_
not modelled 99.7 14 PDB header:transferase
Chain: B: PDB Molecule:calo1 methyltransferase;
PDBTitle: crystal structure of calo1, methyltransferase in calicheamicin2 biosynthesis, sah bound form
55d1fp1d2
not modelled 99.7 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Plant O-methyltransferase, C-terminal domain
56c3lccA_
not modelled 99.6 20 PDB header:transferase
Chain: A: PDB Molecule:putative methyl chloride transferase;
PDBTitle: structure of a sam-dependent halide methyltransferase from arabidopsis2 thaliana
57c3bxoA_
not modelled 99.6 19 PDB header:transferase
Chain: A: PDB Molecule:n,n-dimethyltransferase;
PDBTitle: crystal structure of streptomyces venezuelae desvi
58d2ex4a1
not modelled 99.6 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
59d1yzha1
not modelled 99.6 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
60d1y8ca_
not modelled 99.6 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CAC2371-like
61c3mczB_
not modelled 99.6 16 PDB header:transferase
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: the structure of an o-methyltransferase family protein from2 burkholderia thailandensis.
62c2r3sA_
not modelled 99.6 15 PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative o-methyltransferase (npun_r0239) from2 nostoc punctiforme pcc 73102 at 2.15 a resolution
63d1ri5a_
not modelled 99.6 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:mRNA cap (Guanine N-7) methyltransferase
64c1z3cA_
not modelled 99.6 21 PDB header:transferase
Chain: A: PDB Molecule:mrna capping enzyme;
PDBTitle: encephalitozooan cuniculi mrna cap (guanine-n7)2 methyltransferasein complexed with azoadomet
65c3opnA_
not modelled 99.6 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hemolysin;
PDBTitle: the crystal structure of a putative hemolysin from lactococcus lactis
66d1qzza2
not modelled 99.6 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Plant O-methyltransferase, C-terminal domain
67c3dp7B_
not modelled 99.6 11 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase from bacteroides2 vulgatus atcc 8482
68c3g2qA_
not modelled 99.6 18 PDB header:transferase
Chain: A: PDB Molecule:pcza361.24;
PDBTitle: crystal structure of the glycopeptide n-methyltransferase mtfa2 complexed with sinefungin
69d1ve3a1
not modelled 99.6 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CAC2371-like
70d1tw3a2
not modelled 99.6 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Plant O-methyltransferase, C-terminal domain
71c3sm3A_
not modelled 99.6 16 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferases;
PDBTitle: crystal structure of sam-dependent methyltransferases q8puk2_metma2 from methanosarcina mazei. northeast structural genomics consortium3 target mar262.
72d2a14a1
not modelled 99.6 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arylamine N-methyltransferase
73d1xcla_
not modelled 99.6 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
74c3gwzB_
not modelled 99.6 14 PDB header:transferase
Chain: B: PDB Molecule:mmcr;
PDBTitle: structure of the mitomycin 7-o-methyltransferase mmcr
75d1m6ya2
not modelled 99.6 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
76c3merA_
not modelled 99.6 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:slr1183 protein;
PDBTitle: crystal structure of the methyltransferase slr1183 from2 synechocystis sp. pcc 6803, northeast structural genomics3 consortium target sgr145
77c3p9kD_
not modelled 99.6 15 PDB header:transferase
Chain: D: PDB Molecule:caffeic acid o-methyltransferase;
PDBTitle: crystal structure of perennial ryegrass lpomt1 complexed with s-2 adenosyl-l-homocysteine and coniferaldehyde
78d1zx0a1
not modelled 99.6 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
79c1kyzC_
not modelled 99.6 14 PDB header:transferase
Chain: C: PDB Molecule:caffeic acid 3-o-methyltransferase;
PDBTitle: crystal structure analysis of caffeic acid/5-hydroxyferulic2 acid 3/5-o-methyltransferase ferulic acid complex
80c3i53A_
not modelled 99.6 17 PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of an o-methyltransferase (ncsb1) from2 neocarzinostatin biosynthesis in complex with s-adenosyl-l-3 homocysteine (sah)
81c3ggdA_
not modelled 99.6 17 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase (yp_325210.1)2 from anabaena variabilis atcc 29413 at 2.11 a resolution
82d1xvaa_
not modelled 99.6 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
83c2iipD_
not modelled 99.6 20 PDB header:transferase
Chain: D: PDB Molecule:nicotinamide n-methyltransferase;
PDBTitle: human nicotinamide n-methyltransferase
84c1x1aA_
not modelled 99.6 14 PDB header:transferase
Chain: A: PDB Molecule:crtf-related protein;
PDBTitle: crystal structure of bchu complexed with s-adenosyl-l-methionine
85d1d2ha_
not modelled 99.5 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
86d2fcaa1
not modelled 99.5 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
87c2zfuA_
not modelled 99.5 15 PDB header:nuclear protein
Chain: A: PDB Molecule:cerebral protein 1;
PDBTitle: structure of the methyltransferase-like domain of nucleomethylin
88c2ip2B_
not modelled 99.5 13 PDB header:transferase
Chain: B: PDB Molecule:probable phenazine-specific methyltransferase;
PDBTitle: structure of the pyocyanin biosynthetic protein phzm
89c3g07C_
not modelled 99.5 27 PDB header:transferase
Chain: C: PDB Molecule:7sk snrna methylphosphate capping enzyme;
PDBTitle: methyltransferase domain of human bicoid-interacting protein2 3 homolog (drosophila)
90c3cggB_
not modelled 99.5 17 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of tehb-like sam-dependent methyltransferase2 (np_600671.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.00 a resolution
91c3jwgA_
not modelled 99.5 19 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase type 12;
PDBTitle: crystal structure analysis of the methyltransferase domain2 of bacterial-cthen1-c
92d2i6ga1
not modelled 99.5 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TehB-like
93c3lecA_
not modelled 99.5 11 PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:nadb-rossmann superfamily protein;
PDBTitle: the crystal structure of a protein in the nadb-rossmann2 superfamily from streptococcus agalactiae to 1.8a
94c3i9fB_
not modelled 99.5 14 PDB header:transferase
Chain: B: PDB Molecule:putative type 11 methyltransferase;
PDBTitle: crystal structure of a putative type 11 methyltransferase2 from sulfolobus solfataricus
95d1g8sa_
not modelled 99.5 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Fibrillarin homologue
96c3dxyA_
not modelled 99.5 14 PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of ectrmb in complex with sam
97c3d2lC_
not modelled 99.5 20 PDB header:transferase
Chain: C: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase (zp_00538691.1)2 from exiguobacterium sp. 255-15 at 1.90 a resolution
98d1pjza_
not modelled 99.5 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
99d1dusa_
not modelled 99.5 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical protein MJ0882
100d1fp2a2
not modelled 99.5 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Plant O-methyltransferase, C-terminal domain
101d1yb2a1
not modelled 99.5 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
102c1yb2A_
not modelled 99.5 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.
103d1r74a_
not modelled 99.5 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
104c3p2kA_
not modelled 99.5 16 PDB header:transferase
Chain: A: PDB Molecule:16s rrna methylase;
PDBTitle: structure of an antibiotic related methyltransferase
105c3mtiA_
not modelled 99.5 19 PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a
106d1p1ca_
not modelled 99.5 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
107c1tw3A_
not modelled 99.5 19 PDB header:transferase
Chain: A: PDB Molecule:carminomycin 4-o-methyltransferase;
PDBTitle: crystal structure of carminomycin-4-o-methyltransferase2 (dnrk) in complex with s-adenosyl-l-homocystein (sah) and3 4-methoxy-e-rhodomycin t (m-et)
108c1zgaA_
not modelled 99.5 16 PDB header:plant protein, transferase
Chain: A: PDB Molecule:isoflavanone 4'-o-methyltransferase';
PDBTitle: crystal structure of isoflavanone 4'-o-methyltransferase complexed2 with (+)-6a-hydroxymaackiain
109c3m70A_
not modelled 99.5 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein tehb homolog;
PDBTitle: crystal structure of tehb from haemophilus influenzae
110d1o54a_
not modelled 99.5 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
111c3mb5A_
not modelled 99.5 19 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of p. abyssi trna m1a58 methyltransferase in complex2 with s-adenosyl-l-methionine
112c3gnlB_
not modelled 99.5 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein, duf633, lmof2365_1472;
PDBTitle: structure of uncharacterized protein (lmof2365_1472) from2 listeria monocytogenes serotype 4b
113c1xduA_
not modelled 99.5 21 PDB header:transferase
Chain: A: PDB Molecule:protein rdmb;
PDBTitle: crystal structure of aclacinomycin-10-hydroxylase (rdmb) in complex2 with sinefungin (sfg)
114d1wg8a2
not modelled 99.5 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
115c3eeyJ_
not modelled 99.5 17 PDB header:transferase
Chain: J: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of putative rrna-methylase from clostridium2 thermocellum
116c3jwhA_
not modelled 99.4 23 PDB header:transferase
Chain: A: PDB Molecule:hen1;
PDBTitle: crystal structure analysis of the methyltransferase domain2 of bacterial-avhen1-c
117c2yvlB_
not modelled 99.4 9 PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus
118d2nxca1
not modelled 99.4 25 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ribosomal protein L11 methyltransferase PrmA
119c1fpqA_
not modelled 99.4 13 PDB header:transferase
Chain: A: PDB Molecule:isoliquiritigenin 2'-o-methyltransferase;
PDBTitle: crystal structure analysis of selenomethionine substituted chalcone o-2 methyltransferase
120c3e05B_
not modelled 99.4 16 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating);
PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0