Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	T	G	I	V	T	T	L	I	A	L	C	L	P	V	S	V	F	A	T	T	L	R	L	S	T	D	V	D	L	L	V	L	D	G	K	K	V	S	S	S	L	L	R	G	A	D	S	I	E	L	D	N	G	P	H	Q	L	V
Secondary structure
SS confidence
Disorder		?	?	?												?	?	?	?	?																				?	?	?	?	?	?	?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	R	V	E	K	T	I	H	L	S	N	S	E	E	R	L	Y	I	S	P	P	L	V	V	S	F	N	T	Q	L	I	N	Q	V	N	F	R	L	P	R	L	E	N	E	R	E	A	N	H	F	D	A	A	P	R	L	E	L	L	D
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?	?																									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	D	A	T	P	I	P	V	K	L	D	I	L	A	I	T	S	T	A	K	T	I	D	Y	E	V	E	V	E	R	Y	N	K	S	A	K	R	A	S	L	P	Q	F	A	T	M	M	A	D	D	S	T	L	L	S	G	V	S	E	L
Secondary structure
SS confidence
Disorder					?							?	?	?	?	?	?	?	?	?	?	?		?													?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Sequence		D	A	I	P	P	Q	S	Q	V	L	T	E	Q	R	L	K	Y	W	F	K	L	A	D	P	Q	T	R	N	T	F	L	Q	W	A	E	K	Q	P	S	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?																										?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yq2 chain A domain 3 Region: 32 - 65 Aligned: 34 Modelled: 34 Confidence: 68.8% Identity: 32% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: beta-Galactosidase/glucuronidase, N-terminal domain Phyre2 PDB 1jz8 chain A domain 3 Region: 32 - 63 Aligned: 32 Modelled: 32 Confidence: 67.9% Identity: 28% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: beta-Galactosidase/glucuronidase, N-terminal domain Phyre2 PDB 1yj5 chain C Region: 33 - 66 Aligned: 34 Modelled: 34 Confidence: 54.7% Identity: 26% PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Phyre2 PDB 3bga chain B Region: 32 - 63 Aligned: 32 Modelled: 32 Confidence: 53.0% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 Phyre2 PDB 2je8 chain A domain 4 Region: 32 - 64 Aligned: 33 Modelled: 33 Confidence: 52.4% Identity: 15% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: beta-Galactosidase/glucuronidase, N-terminal domain Phyre2 PDB 3qhs chain D Region: 28 - 62 Aligned: 35 Modelled: 35 Confidence: 50.0% Identity: 23% PDB header:rna binding protein Chain: D: PDB Molecule:protein hfq; PDBTitle: crystal structure of full-length hfq from escherichia coli Phyre2 PDB 1hk9 chain A Region: 28 - 62 Aligned: 35 Modelled: 35 Confidence: 49.9% Identity: 23% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Pleiotropic translational regulator Hfq Phyre2 PDB 3poa chain A Region: 32 - 66 Aligned: 33 Modelled: 33 Confidence: 47.6% Identity: 21% PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions Phyre2 PDB 1u1s chain A domain 1 Region: 28 - 62 Aligned: 35 Modelled: 35 Confidence: 47.4% Identity: 23% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Pleiotropic translational regulator Hfq Phyre2 PDB 1yjm chain A domain 1 Region: 33 - 66 Aligned: 34 Modelled: 34 Confidence: 43.5% Identity: 26% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 2je8 chain B Region: 32 - 64 Aligned: 33 Modelled: 33 Confidence: 42.4% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron Phyre2 PDB 1jz6 chain C Region: 32 - 63 Aligned: 32 Modelled: 32 Confidence: 40.3% Identity: 28% PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole Phyre2 PDB 3oba chain A Region: 32 - 63 Aligned: 32 Modelled: 32 Confidence: 40.1% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis Phyre2 PDB 1yq2 chain C Region: 32 - 63 Aligned: 32 Modelled: 32 Confidence: 39.4% Identity: 34% PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1) Phyre2 PDB 3pe9 chain B Region: 32 - 65 Aligned: 34 Modelled: 34 Confidence: 35.8% Identity: 15% PDB header:unknown function Chain: B: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules Phyre2 PDB 3mv1 chain 4 Region: 32 - 63 Aligned: 32 Modelled: 32 Confidence: 34.8% Identity: 28% PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium Phyre2 PDB 1ujx chain A Region: 34 - 65 Aligned: 32 Modelled: 32 Confidence: 32.4% Identity: 25% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 2vzs chain A domain 4 Region: 32 - 65 Aligned: 34 Modelled: 34 Confidence: 25.9% Identity: 26% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: beta-Galactosidase/glucuronidase, N-terminal domain Phyre2 PDB 1tg7 chain A domain 2 Region: 34 - 92 Aligned: 59 Modelled: 59 Confidence: 25.5% Identity: 3% Fold: Galactose-binding domain-like Superfamily: Galactose-binding domain-like Family: Beta-galactosidase LacA, domains 4 and 5 Phyre2 PDB 3u7z chain A Region: 31 - 65 Aligned: 30 Modelled: 35 Confidence: 25.0% Identity: 17% PDB header:metal binding protein Chain: A: PDB Molecule:putative metal binding protein rumgna_00854; PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution Phyre2 1 d1yq2a3 2 d1jz8a3 3 c1yj5C_ 4 c3bgaB_ 5 d2je8a4 6 c3qhsD_ 7 d1hk9a_ 8 c3poaA_ 9 d1u1sa1 10 d1yjma1 11 c2je8B_ 12 c1jz6C_ 13 c3obaA_ 14 c1yq2C_ 15 c3pe9B_ 16 c3mv14_ 17 d1ujxa_ 18 d2vzsa4 19 d1tg7a2 20 c3u7zA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1yq2a3 68.8 32 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 2 d1jz8a3 67.9 28 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 3 c1yj5C_ 54.7 26 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 4 c3bgaB_ 53.0 22 PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 5 d2je8a4 52.4 15 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 6 c3qhsD_ 50.0 23 PDB header:rna binding protein Chain: D: PDB Molecule:protein hfq; PDBTitle: crystal structure of full-length hfq from escherichia coli 7 d1hk9a_ 49.9 23 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 8 c3poaA_ 47.6 21 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 9 d1u1sa1 47.4 23 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 10 d1yjma1 43.5 26 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 11 c2je8B_ 42.4 15 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 12 c1jz6C_ 40.3 28 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole 13 c3obaA_ 40.1 25 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis 14 c1yq2C_ 39.4 34 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1) 15 c3pe9B_ 35.8 15 PDB header:unknown function Chain: B: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 16 c3mv14_ 34.8 28 PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium 17 d1ujxa_ 32.4 25 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 18 d2vzsa4 25.9 26 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 19 d1tg7a2 25.5 3 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Beta-galactosidase LacA, domains 4 and 5 20 c3u7zA_ 25.0 17 PDB header:metal binding protein Chain: A: PDB Molecule:putative metal binding protein rumgna_00854; PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution 21 c3gm8A_ not modelled 22.4 15 PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase; PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus 22 c2qguA_ not modelled 21.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable signal peptide protein; PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89 23 c2gtqA_ not modelled 21.3 15 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of aminopeptidase n from human pathogen neisseria2 meningitidis 24 d2nqda1 not modelled 19.2 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:ICP-like Family:ICP-like 25 c2h0eA_ not modelled 18.8 17 PDB header:hydrolase Chain: A: PDB Molecule:transthyretin-like protein pucm; PDBTitle: crystal structure of pucm in the absence of substrate 26 d1lgpa_ not modelled 18.1 24 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 27 d1bhga2 not modelled 17.9 13 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:beta-Galactosidase/glucuronidase, N-terminal domain 28 d2jnaa1 not modelled 16.9 23 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 29 c2w1wB_ not modelled 16.1 13 PDB header:hydrolase Chain: B: PDB Molecule:lipolytic enzyme, g-d-s-l; PDBTitle: native structure of a family 35 carbohydrate binding module2 from clostridium thermocellum 30 d2c34a1 not modelled 16.0 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:ICP-like Family:ICP-like 31 d3bvua3 not modelled 15.2 0 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:alpha-mannosidase 32 c3pe9C_ not modelled 15.0 10 PDB header:unknown function Chain: C: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 33 c2h1xB_ not modelled 13.8 18 PDB header:hydrolase Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein) 34 c2gpzC_ not modelled 13.6 16 PDB header:hydrolase Chain: C: PDB Molecule:transthyretin-like protein; PDBTitle: transthyretin-like protein from salmonella dublin 35 c3pe9A_ not modelled 13.6 10 PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 36 c1htyA_ not modelled 13.6 0 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase ii; PDBTitle: golgi alpha-mannosidase ii 37 d1w9sa_ not modelled 13.2 3 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 6 carbohydrate binding module, CBM6 38 d1oo2a_ not modelled 13.2 9 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 39 d2g1la1 not modelled 12.7 33 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 40 c3ff6D_ not modelled 12.6 32 PDB header:ligase Chain: D: PDB Molecule:acetyl-coa carboxylase 2; PDBTitle: human acc2 ct domain with cp-640186 41 c3qvaB_ not modelled 12.5 11 PDB header:hydrolase Chain: B: PDB Molecule:transthyretin-like protein; PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase 42 d1ttaa_ not modelled 12.2 9 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 43 c3htxA_ not modelled 11.9 64 PDB header:transferase/rna Chain: A: PDB Molecule:hen1; PDBTitle: crystal structure of small rna methyltransferase hen1 44 c2x24B_ not modelled 11.8 28 PDB header:ligase Chain: B: PDB Molecule:acetyl-coa carboxylase; PDBTitle: bovine acc2 ct domain in complex with inhibitor 45 c2ow7A_ not modelled 11.8 0 PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase 2; PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride 46 d2oeza1 not modelled 11.7 27 Fold:YacF-like Superfamily:YacF-like Family:YacF-like 47 c3u2bC_ not modelled 11.5 27 PDB header:transcription/dna Chain: C: PDB Molecule:transcription factor sox-4; PDBTitle: structure of the sox4 hmg domain bound to dna 48 c2wgnB_ not modelled 11.5 7 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:inhibitor of cysteine peptidase compnd 3; PDBTitle: pseudomonas aeruginosa icp 49 c3hx1B_ not modelled 11.2 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a 50 c2v4vA_ not modelled 11.0 12 PDB header:hydrolase Chain: A: PDB Molecule:gh59 galactosidase; PDBTitle: crystal structure of a family 6 carbohydrate-binding module2 from clostridium cellulolyticum in complex with xylose 51 d1od3a_ not modelled 10.7 14 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 6 carbohydrate binding module, CBM6 52 d1i11a_ not modelled 10.6 9 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 53 c3fm8A_ not modelled 10.5 30 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 54 d1kq1a_ not modelled 10.4 14 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 55 d1uy4a_ not modelled 10.2 18 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 6 carbohydrate binding module, CBM6 56 c3cmgA_ not modelled 9.7 12 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 57 d2g82a1 not modelled 9.6 22 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 58 d1f86a_ not modelled 9.5 9 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 59 c3d0wD_ not modelled 9.4 24 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yflh protein; PDBTitle: crystal structure of yflh protein from bacillus subtilis.2 northeast structural genomics consortium target sr326 60 c3lpgA_ not modelled 8.9 8 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea 61 c3kcmC_ not modelled 8.6 13 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin family protein; PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens 62 d1tfpa_ not modelled 8.6 9 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 63 d2d6fc3 not modelled 8.6 9 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:GatB/GatE catalytic domain-like 64 c2crjA_ not modelled 8.6 21 PDB header:gene regulation Chain: A: PDB Molecule:swi/snf-related matrix-associated actin- PDBTitle: solution structure of the hmg domain of mouse hmg domain2 protein hmgx2 65 c3pe9D_ not modelled 8.2 10 PDB header:unknown function Chain: D: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 66 d1sr3a_ not modelled 8.1 14 Fold:OB-fold Superfamily:Heme chaperone CcmE Family:Heme chaperone CcmE 67 d1hsma_ not modelled 7.9 15 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 68 d1wlna1 not modelled 7.8 20 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 69 c1d0rA_ not modelled 7.8 33 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water 70 d1uxxx_ not modelled 7.8 23 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 6 carbohydrate binding module, CBM6 71 c2co9A_ not modelled 7.7 6 PDB header:transcription Chain: A: PDB Molecule:thymus high mobility group box protein tox; PDBTitle: solution structure of the hmg_box domain of thymus high2 mobility group box protein tox from mouse 72 d1n67a1 not modelled 7.4 10 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Fibrinogen-binding domain 73 c2bgpA_ not modelled 7.4 27 PDB header:carbohydrate binding protein Chain: A: PDB Molecule:endo-b1,4-mannanase 5c; PDBTitle: mannan binding module from man5c in bound conformation 74 d1k1fa_ not modelled 7.3 13 Fold:Bcr-Abl oncoprotein oligomerization domain Superfamily:Bcr-Abl oncoprotein oligomerization domain Family:Bcr-Abl oncoprotein oligomerization domain 75 c1yq1A_ not modelled 7.3 14 PDB header:transferase Chain: A: PDB Molecule:glutathione s-transferase; PDBTitle: structural genomics of caenorhabditis elegans: glutathione2 s-transferase 76 c1hrzA_ not modelled 7.2 24 PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multi-dimensional heteronuclear-edited and-filtered nmr 77 d2gzka2 not modelled 7.2 24 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 78 c1hryA_ not modelled 7.2 24 PDB header:dna binding protein/dna Chain: A: PDB Molecule:human sry; PDBTitle: the 3d structure of the human sry-dna complex solved by2 multid-dimensional heteronuclear-edited and-filtered nmr 79 c2vzvB_ not modelled 7.2 28 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 80 d2noca1 not modelled 7.1 39 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 81 c2cdpC_ not modelled 7.0 29 PDB header:hydrolase Chain: C: PDB Molecule:beta-agarase 1; PDBTitle: structure of a cbm6 in complex with neoagarohexaose 82 d1uxza_ not modelled 6.9 24 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 6 carbohydrate binding module, CBM6 83 c1hmfA_ not modelled 6.8 15 PDB header:dna-binding Chain: A: PDB Molecule:high mobility group protein fragment-b; PDBTitle: structure of the hmg box motif in the b-domain of hmg1 84 d1hmfa_ not modelled 6.8 15 Fold:HMG-box Superfamily:HMG-box Family:HMG-box 85 d1kgia_ not modelled 6.8 7 Fold:Prealbumin-like Superfamily:Transthyretin (synonym: prealbumin) Family:Transthyretin (synonym: prealbumin) 86 c3kzeA_ not modelled 6.8 12 PDB header:signaling protein Chain: A: PDB Molecule:t-lymphoma invasion and metastasis-inducing protein 1; PDBTitle: crystal structure of t-cell lymphoma invasion and metastasis-1 pdz in2 complex with ssrkeyya peptide 87 c1z5hB_ not modelled 6.7 12 PDB header:hydrolase Chain: B: PDB Molecule:tricorn protease interacting factor f3; PDBTitle: crystal structures of the tricorn interacting factor f32 from thermoplasma acidophilum 88 c2kklA_ not modelled 6.7 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 89 d1z0mb1 not modelled 6.7 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:AMPK-beta glycogen binding domain-like 90 d1zzoa1 not modelled 6.6 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 91 c3hsbB_ not modelled 6.6 17 PDB header:rna binding protein/rna Chain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer 92 c3k1rA_ not modelled 6.6 19 PDB header:structural protein Chain: A: PDB Molecule:harmonin; PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans 93 c1kq1W_ not modelled 6.4 14 PDB header:translation Chain: W: PDB Molecule:host factor for q beta; PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq 94 c3cynC_ not modelled 6.3 14 PDB header:oxidoreductase Chain: C: PDB Molecule:probable glutathione peroxidase 8; PDBTitle: the structure of human gpx8 95 c2vr3B_ not modelled 6.3 10 PDB header:cell adhesion Chain: B: PDB Molecule:clumping factor a; PDBTitle: structural and biochemical characterization of fibrinogen2 binding to clfa from staphylocccus aureus 96 c2vzqA_ not modelled 6.3 13 PDB header:hydrolase Chain: A: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: c-terminal cbm35 from amycolatopsis orientalis exo-2 chitosanase csxa in complex with digalacturonic acid 97 c2p5qA_ not modelled 6.2 7 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 5; PDBTitle: crystal structure of the poplar glutathione peroxidase 5 in2 the reduced form 98 d2ff4a3 not modelled 6.2 20 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 99 d1j3da_ not modelled 6.2 21 Fold:HMG-box Superfamily:HMG-box Family:HMG-box

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0