Email l.a.kelley@imperial.ac.uk Description P26218 Date Thu Jan 5 11:42:49 GMT 2012 Unique Job ID bd050d39ca05dc13

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1af6a_ 100.0 28 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 2 d2mpra_ 100.0 26 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 3 d1a0tp_ 100.0 22 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 4 d2zfga1 94.5 13 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 5 c3qraA_ 93.7 16 PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis 6 d1qj8a_ 91.4 7 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 7 d1phoa_ 90.5 12 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 8 c2k0lA_ 88.2 10 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. 9 d1g90a_ 85.0 9 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 10 c1cosB_ 81.1 24 PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 11 c1cosA_ 81.1 24 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 12 c1cosC_ 80.7 24 PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 13 c3nsgA_ 79.9 13 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 14 c2x6pC_ 76.8 24 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 15 c2x6pA_ 76.8 24 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 16 c2x6pB_ 76.8 24 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 17 c3n4xB_ 76.2 15 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 18 c3mkxC_ 74.4 9 PDB header:antiviral protein Chain: C: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of bst2/tetherin 19 c1zxaB_ 73.0 37 PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia 20 c1aq5C_ 72.6 29 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 21 c3u1aC_ not modelled 66.1 15 PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha 22 c2a3dA_ not modelled 65.9 32 PDB header:three-helix bundle Chain: A: PDB Molecule:protein (de novo three-helix bundle); PDBTitle: solution structure of a de novo designed single chain three-2 helix bundle (a3d) 23 c1y4cA_ not modelled 63.7 10 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 24 c2x7aB_ not modelled 63.3 9 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 25 c3m9bK_ not modelled 60.5 11 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 26 c2xzrA_ not modelled 59.8 10 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 27 c3cveC_ not modelled 59.3 16 PDB header:signaling protein Chain: C: PDB Molecule:homer protein homolog 1; PDBTitle: crystal structure of the carboxy terminus of homer1 28 c2jgoB_ not modelled 58.8 20 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 29 c3ljmA_ not modelled 58.8 20 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 30 c2jgoC_ not modelled 58.8 20 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 31 c3ljmB_ not modelled 58.8 20 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 32 c3ljmC_ not modelled 58.8 20 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 33 c2jgoA_ not modelled 58.8 20 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 34 c2wjqA_ not modelled 58.2 16 PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. 35 c3cvfA_ not modelled 57.9 24 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 36 c1ca9D_ not modelled 57.8 6 PDB header:tnf signaling Chain: D: PDB Molecule:protein (tnf receptor associated factor 2); PDBTitle: structure of tnf receptor associated factor 2 in complex2 with a peptide from tnf-r2 37 c2zvfG_ not modelled 56.3 12 PDB header:ligase Chain: G: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase c-terminal dimerization domain 38 c3ni0A_ not modelled 56.2 19 PDB header:immune system Chain: A: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of mouse bst-2/tetherin ectodomain 39 c3e98B_ not modelled 54.1 21 PDB header:unknown function Chain: B: PDB Molecule:gaf domain of unknown function; PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution 40 c1u0iA_ not modelled 51.9 24 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 41 c3nb3C_ not modelled 51.7 11 PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components 42 c1kzzA_ not modelled 48.7 16 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: downstream regulator tank binds to the cd40 recognition2 site on traf3 43 c3iynR_ not modelled 48.1 14 PDB header:virus Chain: R: PDB Molecule:hexon-associated protein; PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5 44 c1coiA_ not modelled 47.4 12 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 45 c1abzA_ not modelled 46.6 30 PDB header:de novo design Chain: A: PDB Molecule:alpha-t-alpha; PDBTitle: alpha-t-alpha, a de novo designed peptide, nmr, 232 structures 46 c1g6uB_ not modelled 46.1 26 PDB header:de novo protein Chain: B: PDB Molecule:domain swapped dimer; PDBTitle: crystal structure of a domain swapped dimer 47 d1i78a_ not modelled 46.1 18 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane protease OMPT 48 d1vp7b_ not modelled 46.0 15 Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like 49 c1kwwC_ not modelled 44.4 21 PDB header:immune system, sugar binding protein Chain: C: PDB Molecule:mannose-binding protein a; PDBTitle: rat mannose protein a complexed with a-me-fuc. 50 c2xdjF_ not modelled 43.4 18 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 51 c1ei3E_ not modelled 39.6 9 PDB header: PDB COMPND: 52 d1osma_ not modelled 39.5 15 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 53 c2iwvD_ not modelled 39.0 9 PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation 54 c2x27X_ not modelled 38.8 10 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa 55 c3efgA_ not modelled 38.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein slyx homolog; PDBTitle: structure of slyx protein from xanthomonas campestris pv. campestris2 str. atcc 33913 56 c1rb1A_ not modelled 36.8 19 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 57 c3k7zA_ not modelled 36.8 19 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 58 c1rb1B_ not modelled 36.8 19 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 59 c3k7zB_ not modelled 36.8 19 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 60 c1swiA_ not modelled 36.8 19 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 61 c1rb6C_ not modelled 36.8 19 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 62 c2yy0D_ not modelled 36.7 15 PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens 63 d1t3ua_ not modelled 35.4 15 Fold:Cell division protein ZapA-like Superfamily:Cell division protein ZapA-like Family:Cell division protein ZapA-like 64 d1fxka_ not modelled 34.5 9 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 65 c2zdiA_ not modelled 34.4 18 PDB header:chaperone Chain: A: PDB Molecule:prefoldin subunit beta; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 66 c2ykqC_ not modelled 34.0 16 PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer 67 c1ztaA_ not modelled 32.8 22 PDB header:dna-binding motif Chain: A: PDB Molecule:leucine zipper monomer; PDBTitle: the solution structure of a leucine-zipper motif peptide 68 d1seda_ not modelled 32.7 40 Fold:Hypothetical protein YhaI Superfamily:Hypothetical protein YhaI Family:Hypothetical protein YhaI 69 c1deqF_ not modelled 32.6 15 PDB header: PDB COMPND: 70 d1ykhb1 not modelled 32.2 14 Fold:Mediator hinge subcomplex-like Superfamily:Mediator hinge subcomplex-like Family:CSE2-like 71 c3ipkA_ not modelled 32.0 10 PDB header:cell adhesion Chain: A: PDB Molecule:agi/ii; PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans 72 c1ce0B_ not modelled 31.2 25 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 73 c2f1tB_ not modelled 31.2 9 PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw 74 c2o7hF_ not modelled 30.4 16 PDB header:transcription Chain: F: PDB Molecule:general control protein gcn4; PDBTitle: crystal structure of trimeric coiled coil gcn4 leucine zipper 75 c2l8aA_ not modelled 30.0 14 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: structure of a novel cbm3 lacking the calcium-binding site 76 c2x4mD_ not modelled 29.4 12 PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla 77 c2zv4O_ not modelled 28.8 10 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 78 c1l6nA_ not modelled 28.3 20 PDB header:viral protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein 79 c1d7mA_ not modelled 27.6 26 PDB header:contractile protein Chain: A: PDB Molecule:cortexillin i; PDBTitle: coiled-coil dimerization domain from cortexillin i 80 c3dbzB_ not modelled 27.4 24 PDB header:sugar binding protein Chain: B: PDB Molecule:pulmonary surfactant-associated protein d; PDBTitle: human surfactant protein d 81 c1ij2C_ not modelled 27.4 19 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 82 c1n73C_ not modelled 27.1 8 PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 83 c1ij3B_ not modelled 27.0 19 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 84 c1ij3C_ not modelled 27.0 19 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 85 c3bvhE_ not modelled 26.9 15 PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 86 c3kqgC_ not modelled 26.6 18 PDB header:immune system Chain: C: PDB Molecule:c-type lectin domain family 4 member k; PDBTitle: trimeric structure of langerin 87 c2z5hB_ not modelled 26.1 21 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin PDBTitle: crystal structure of the head-to-tail junction of2 tropomyosin complexed with a fragment of tnt 88 c2zdiC_ not modelled 25.9 15 PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 89 c1ij2B_ not modelled 25.7 19 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 90 d1ivsa1 not modelled 25.6 23 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 91 c2zshB_ not modelled 24.4 40 PDB header:hormone receptor Chain: B: PDB Molecule:della protein gai; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor 92 d1qjpa_ not modelled 24.4 11 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 93 c2wamB_ not modelled 24.0 17 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical alanine and leucine rich PDBTitle: crystal structure of mycobacterium tuberculosis unknown2 function protein rv2714 94 c3h5gB_ not modelled 23.8 21 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 95 c3h5fA_ not modelled 23.8 21 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 96 c3h5gC_ not modelled 23.8 21 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 97 c3h5fB_ not modelled 23.8 21 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 98 c3h5fC_ not modelled 23.8 21 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l16l-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 99 c3h5gA_ not modelled 23.8 21 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l16d-pen; PDBTitle: switching the chirality of the metal environment alters the2 coordination mode in designed peptides. 100 c2rjzA_ not modelled 23.6 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa 101 d2ao9a1 not modelled 23.4 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Nanomeric phage protein-like 102 c2hpcH_ not modelled 21.6 15 PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 103 c2hpcF_ not modelled 20.6 9 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 104 c3ojaB_ not modelled 20.6 8 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex