Email l.a.kelley@imperial.ac.uk Description P0A7I0 Date Thu Jan 5 11:05:42 GMT 2012 Unique Job ID bc38dc11fe7d9f3a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3d5cX_ 100.0 48 PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. 2 d1gqea_ 100.0 38 Fold:Release factor Superfamily:Release factor Family:Release factor 3 c2ihr1_ 100.0 35 PDB header:translation Chain: 1: PDB Molecule:peptide chain release factor 2; PDBTitle: rf2 of thermus thermophilus 4 d1rq0a_ 100.0 45 Fold:Release factor Superfamily:Release factor Family:Release factor 5 c1zbtA_ 100.0 44 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution 6 d2b3tb1 100.0 99 Fold:Release factor Superfamily:Release factor Family:Release factor 7 c2jy9A_ 99.8 27 PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 8 c2jvaA_ 99.8 32 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 9 d1j26a_ 99.8 30 Fold:dsRBD-like Superfamily:Peptidyl-tRNA hydrolase domain-like Family:Peptidyl-tRNA hydrolase domain 10 c3errB_ 82.9 15 PDB header:ligase Chain: B: PDB Molecule:fusion protein of microtubule binding domain from PDBTitle: microtubule binding domain from mouse cytoplasmic dynein as2 a fusion with seryl-trna synthetase 11 c3cx3A_ 56.1 22 PDB header:metal binding protein Chain: A: PDB Molecule:lipoprotein; PDBTitle: crystal structure analysis of the streptococcus pneumoniae2 adcaii protein 12 d1xvla1 49.9 15 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 13 c3hjtB_ 46.1 19 PDB header:cell adhesion, transport protein Chain: B: PDB Molecule:lmb; PDBTitle: structure of laminin binding protein (lmb) of streptococcus2 agalactiae a bifunctional protein with adhesin and metal3 transporting activity 14 d1pq4a_ 45.4 22 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 15 c1f8sA_ 44.6 30 PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate. 16 c3sjaG_ 44.3 13 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain 17 c2ps3A_ 44.2 17 PDB header:metal transport Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: structure and metal binding properties of znua, a2 periplasmic zinc transporter from escherichia coli 18 c3mfqB_ 42.4 17 PDB header:metal binding protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center 19 c3layF_ 41.6 20 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 20 c3ci9B_ 41.6 8 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 21 c1wpaA_ not modelled 40.1 8 PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: 1.5 angstrom crystal structure of human occludin fragment2 413-522 22 c2ogwB_ not modelled 38.0 17 PDB header:transport protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua PDBTitle: structure of abc type zinc transporter from e. coli 23 c1wleB_ not modelled 37.6 16 PDB header:ligase Chain: B: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of mammalian mitochondrial seryl-trna2 synthetase complexed with seryl-adenylate 24 c1toaA_ not modelled 37.1 14 PDB header:binding protein Chain: A: PDB Molecule:protein (periplasmic binding protein troa); PDBTitle: periplasmic zinc binding protein troa from treponema pallidum 25 d1toaa_ not modelled 37.1 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 26 c2ov3A_ not modelled 36.6 24 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein component of an abc PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc2 bound 27 c2e1mA_ not modelled 36.5 25 PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6 28 c1s1hI_ not modelled 35.5 16 PDB header:ribosome Chain: I: PDB Molecule:40s ribosomal protein s16; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 29 c1xawA_ not modelled 35.1 8 PDB header:cell adhesion Chain: A: PDB Molecule:occludin; PDBTitle: crystal structure of the cytoplasmic distal c-terminal2 domain of occludin 30 c2jyaA_ not modelled 34.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1810; PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776 31 c3qo8A_ not modelled 34.2 7 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic; PDBTitle: crystal structure of seryl-trna synthetase from candida albicans 32 d2ctka1 not modelled 33.9 14 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 33 c2zkrv_ not modelled 31.6 12 PDB header:ribosomal protein/rna Chain: V: PDB Molecule:rna expansion segment es9 part2; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 34 c3pdgA_ not modelled 30.5 20 PDB header:unknown function Chain: A: PDB Molecule:fibronectin(iii)-like module; PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules 35 d1ivsa1 not modelled 30.3 16 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 36 d2vqei1 not modelled 30.0 21 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 37 d2gy9i1 not modelled 28.8 32 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 38 c3bbnI_ not modelled 27.8 21 PDB header:ribosome Chain: I: PDB Molecule:ribosomal protein s9; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 39 c2o1eB_ not modelled 27.3 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ycdh; PDBTitle: crystal structure of the metal-dependent lipoprotein ycdh2 from bacillus subtilis, northeast structural genomics3 target sr583 40 c2fsgA_ not modelled 27.0 14 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli 41 c1i4wA_ not modelled 25.3 20 PDB header:transcription Chain: A: PDB Molecule:mitochondrial replication protein mtf1; PDBTitle: the crystal structure of the transcription factor sc-mttfb2 offers intriguing insights into mitochondrial transcription 42 d1i4wa_ not modelled 25.3 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA adenine dimethylase-like 43 c2r60A_ not modelled 24.4 15 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 44 d1sd4a_ not modelled 24.4 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor 45 c2zkqi_ not modelled 22.4 23 PDB header:ribosomal protein/rna Chain: I: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 46 c2lf0A_ not modelled 21.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yibl; PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scatting, nesg4 target sfr339/ocsp target sf3636 47 c2vvlD_ not modelled 21.6 20 PDB header:oxidoreductase Chain: D: PDB Molecule:monoamine oxidase n; PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger. 48 d1nj1a3 not modelled 21.5 10 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 49 d1psza_ not modelled 20.3 18 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 50 d2foka1 not modelled 20.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Restriction endonuclease FokI, N-terminal (recognition) domain 51 d2pc6a2 not modelled 19.8 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 52 c2yg4B_ not modelled 19.5 30 PDB header:oxidoreductase Chain: B: PDB Molecule:putrescine oxidase; PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine 53 d2axya1 not modelled 19.0 16 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 54 c2xzmI_ not modelled 18.8 23 PDB header:ribosome Chain: I: PDB Molecule:rps16e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 55 c1sezA_ not modelled 18.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase, mitochondrial; PDBTitle: crystal structure of protoporphyrinogen ix oxidase 56 d2fgca2 not modelled 18.8 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 57 c1xvlC_ not modelled 18.4 13 PDB header:metal transport Chain: C: PDB Molecule:mn transporter; PDBTitle: the three-dimensional structure of mntc from synechocystis2 6803 58 c3pdyB_ not modelled 18.2 21 PDB header:structural protein Chain: B: PDB Molecule:plectin; PDBTitle: structure of the third and fourth spectrin repeats of the plakin2 domain of plectin 59 d1m0da_ not modelled 17.1 17 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 60 c2bbjB_ not modelled 17.0 10 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 61 c3sjbC_ not modelled 16.4 12 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain 62 d2f1fa1 not modelled 16.3 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 63 d2ctla1 not modelled 15.7 12 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 64 d2ctea1 not modelled 14.9 16 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 65 c3rhaA_ not modelled 14.8 26 PDB header:oxidoreductase Chain: A: PDB Molecule:putrescine oxidase; PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens 66 c1s3bB_ not modelled 14.7 22 PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase [flavin-containing] b; PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan 67 c3nrxB_ not modelled 14.6 14 PDB header:protein binding Chain: B: PDB Molecule:protein regulator of cytokinesis 1; PDBTitle: insights into anti-parallel microtubule crosslinking by prc1, a2 conserved non-motor microtubule binding protein 68 c2b7fD_ not modelled 14.5 40 PDB header:hydrolase/hydrolase inhibitor Chain: D: PDB Molecule:htlv protease; PDBTitle: crystal structure of human t-cell leukemia virus protease, a novel2 target for anti-cancer design 69 d1lp1a_ not modelled 14.5 24 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:Immunoglobulin-binding protein A modules 70 d1nj8a3 not modelled 13.9 14 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 71 d1s05a_ not modelled 13.2 14 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 72 c3neaA_ not modelled 12.9 27 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from francisella2 tularensis 73 d1djqa3 not modelled 12.9 34 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 74 c3s2xB_ not modelled 12.7 18 PDB header:transferase Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha; PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain 75 c3h0gA_ not modelled 12.7 11 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase ii subunit rpb1; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 76 d1vqov1 not modelled 12.5 18 Fold:Long alpha-hairpin Superfamily:Ribosomal protein L29 (L29p) Family:Ribosomal protein L29 (L29p) 77 c3g5rA_ not modelled 12.3 25 PDB header:transferase Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)- PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate 78 d2g5ca1 not modelled 12.2 12 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:TyrA dimerization domain-like 79 c2z2jA_ not modelled 12.1 23 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of peptidyl-trna hydrolase from mycobacterium2 tuberculosis 80 c1ztgD_ not modelled 11.4 16 PDB header:dna, rna binding protein/dna Chain: D: PDB Molecule:poly(rc)-binding protein 1; PDBTitle: human alpha polyc binding protein kh1 81 c2p90B_ not modelled 11.3 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein cgl1923; PDBTitle: the crystal structure of a protein of unknown function from2 corynebacterium glutamicum atcc 13032 82 c2dq3A_ not modelled 11.3 11 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 83 d3lada1 not modelled 11.2 23 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 84 d1dtja_ not modelled 11.2 21 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 85 c2pc6C_ not modelled 11.1 15 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 86 d2asba3 not modelled 11.0 22 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 87 d1n4ka2 not modelled 10.9 32 Fold:beta-Trefoil Superfamily:MIR domain Family:MIR domain 88 d1r73a_ not modelled 10.8 16 Fold:Long alpha-hairpin Superfamily:Ribosomal protein L29 (L29p) Family:Ribosomal protein L29 (L29p) 89 c3v2iA_ not modelled 10.7 23 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis 90 d1wvna1 not modelled 10.7 20 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 91 c2ftcB_ not modelled 10.6 23 PDB header:ribosome Chain: B: PDB Molecule:mitochondrial ribosomal protein l2; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 92 d2ho2a1 not modelled 10.6 57 Fold:WW domain-like Superfamily:WW domain Family:WW domain 93 c3on7C_ not modelled 10.6 15 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution 94 d1hh2p3 not modelled 10.5 25 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 95 c2z9fC_ not modelled 10.4 19 PDB header:biosynthetic protein Chain: C: PDB Molecule:cellulose synthase operon protein d; PDBTitle: crystal structure of axcesd protein from acetobacter xylinum 96 c2fgcA_ not modelled 10.4 18 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima 97 c2b9yA_ not modelled 10.3 22 PDB header:isomerase Chain: A: PDB Molecule:putative aminooxidase; PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes 98 d1vk8a_ not modelled 10.3 6 Fold:Ferredoxin-like Superfamily:MTH1187/YkoF-like Family:MTH1187-like 99 d1s35a1 not modelled 10.3 9 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat