Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	L	I	K	V	P	C	M	Q	I	T	N	M	H	C	S	G	Q	T	V	S	L	A	A	G	D	Y	H	A	T	I	V	T	V	G	A	G	L	A	E	L	T	F	Q	G	C	H	L	V	I	P	H	K	P	E	E	M	P	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	H	L	G	K	V	L	I	P	W	P	N	R	I	A	N	G	C	Y	R	Y	Q	G	Q	E	Y	Q	L	P	I	N	E	H	S	S	K	A	A	I	H	G	L	L	A	W	R	D	W	Q	I	S	E	L	T	A	T	S	V	T	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	A	F	L	P	P	S	Y	G	Y	P	F	M	L	A	S	Q	V	V	Y	S	L	N	A	H	T	G	L	S	V	E	I	A	S	Q	N	I	G	T	V	A	A	P	Y	G	V	G	I	H	P	Y	L	T	C	N	L	T	S	V	D
Secondary structure
SS confidence
Disorder								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	Y	L	F	Q	L	P	A	N	Q	V	Y	A	V	D	E	H	A	N	P	T	T	L	H	H	V	D	E	L	D	L	N	F	T	Q	A	K	K	I	A	A	T	K	I	D	H	T	F	K	T	A	N	D	L	W	E	M	T	I	T
Secondary structure
SS confidence
Disorder																																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		H	P	Q	Q	A	L	S	V	S	L	C	S	D	Q	L	W	V	Q	V	Y	S	G	E	K	L	Q	R	Q	G	L	A	V	E	P	M	S	C	P	P	N	A	F	N	S	G	I	D	L	L	L	L	E	S	G	K	P	H	R	L	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		F	N	I	Y	G	Q	R	K
Secondary structure
SS confidence
Disorder									?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3nre chain B Region: 19 - 306 Aligned: 278 Modelled: 288 Confidence: 100.0% Identity: 20% PDB header:isomerase Chain: B: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative aldose 1-epimerase (b2544) from2 escherichia coli k12 at 1.59 a resolution Phyre2 PDB 1z45 chain A domain 1 Region: 9 - 305 Aligned: 296 Modelled: 297 Confidence: 100.0% Identity: 23% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 1so0 chain A Region: 1 - 305 Aligned: 297 Modelled: 302 Confidence: 100.0% Identity: 23% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 3imh chain B Region: 19 - 307 Aligned: 280 Modelled: 287 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: B: PDB Molecule:galactose-1-epimerase; PDBTitle: crystal structure of galactose 1-epimerase from lactobacillus2 acidophilus ncfm Phyre2 PDB 1yga chain A Region: 19 - 306 Aligned: 286 Modelled: 288 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:hypothetical 37.9 kda protein in bio3-hxt17 PDBTitle: crystal structure of saccharomyces cerevisiae yn9a protein,2 new york structural genomics consortium Phyre2 PDB 1z45 chain A Region: 8 - 305 Aligned: 295 Modelled: 296 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:gal10 bifunctional protein; PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose Phyre2 PDB 1lur chain A Region: 21 - 307 Aligned: 282 Modelled: 287 Confidence: 100.0% Identity: 22% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 1nsz chain A Region: 19 - 308 Aligned: 286 Modelled: 290 Confidence: 100.0% Identity: 20% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Aldose 1-epimerase (mutarotase) Phyre2 PDB 3os7 chain B Region: 15 - 308 Aligned: 291 Modelled: 293 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: B: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution Phyre2 PDB 3os7 chain D Region: 15 - 308 Aligned: 291 Modelled: 293 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: D: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution Phyre2 PDB 3dcd chain A Region: 20 - 307 Aligned: 278 Modelled: 279 Confidence: 100.0% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from2 lactobacillus acidophilus at the resolution 1.9a. northeast3 structural genomics consortium target lar33. Phyre2 PDB 3q1n chain A Region: 20 - 305 Aligned: 274 Modelled: 276 Confidence: 100.0% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: crystal structure of a galactose mutarotase-like protein (lsei_2598)2 from lactobacillus casei atcc 334 at 1.61 a resolution Phyre2 PDB 3mwx chain A Region: 19 - 307 Aligned: 284 Modelled: 289 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative galactose mutarotase (bsu18360) from2 bacillus subtilis at 1.45 a resolution Phyre2 PDB 3k25 chain B Region: 18 - 306 Aligned: 263 Modelled: 280 Confidence: 100.0% Identity: 20% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1438 protein; PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112 Phyre2 PDB 2cis chain A Region: 10 - 303 Aligned: 259 Modelled: 294 Confidence: 100.0% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:hexose-6-phosphate mutarotase; PDBTitle: structure-based functional annotation: yeast ymr099c codes2 for a d-hexose-6-phosphate mutarotase. complex with3 tagatose-6-phosphate Phyre2 PDB 2htb chain B Region: 19 - 308 Aligned: 244 Modelled: 266 Confidence: 100.0% Identity: 15% PDB header:isomerase Chain: B: PDB Molecule:putative enzyme related to aldose 1-epimerase; PDBTitle: crystal structure of a putative mutarotase (yead) from2 salmonella typhimurium in monoclinic form Phyre2 PDB 1jov chain A Region: 15 - 303 Aligned: 235 Modelled: 244 Confidence: 100.0% Identity: 18% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: Hypothetical protein HI1317 Phyre2 PDB 3ty1 chain B Region: 19 - 305 Aligned: 268 Modelled: 276 Confidence: 100.0% Identity: 11% PDB header:isomerase Chain: B: PDB Molecule:hypothetical aldose 1-epimerase; PDBTitle: crystal structure of a hypothetical aldose 1-epimerase (kpn_04629)2 from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.90 a3 resolution Phyre2 PDB 3blc chain B Region: 17 - 305 Aligned: 230 Modelled: 240 Confidence: 98.1% Identity: 12% PDB header:chaperone,protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc Phyre2 PDB 3bs6 chain B Region: 17 - 305 Aligned: 227 Modelled: 233 Confidence: 98.1% Identity: 10% PDB header:membrane protein, protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc Phyre2 1 c3nreB_ 2 d1z45a1 3 d1so0a_ 4 c3imhB_ 5 c1ygaA_ 6 c1z45A_ 7 d1lura_ 8 d1nsza_ 9 c3os7B_ 10 c3os7D_ 11 c3dcdA_ 12 c3q1nA_ 13 c3mwxA_ 14 c3k25B_ 15 c2cisA_ 16 c2htbB_ 17 d1jova_ 18 c3ty1B_ 19 c3blcB_ 20 c3bs6B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nreB_ 100.0 20 PDB header:isomerase Chain: B: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative aldose 1-epimerase (b2544) from2 escherichia coli k12 at 1.59 a resolution 2 d1z45a1 100.0 23 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 3 d1so0a_ 100.0 23 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 4 c3imhB_ 100.0 19 PDB header:isomerase Chain: B: PDB Molecule:galactose-1-epimerase; PDBTitle: crystal structure of galactose 1-epimerase from lactobacillus2 acidophilus ncfm 5 c1ygaA_ 100.0 22 PDB header:isomerase Chain: A: PDB Molecule:hypothetical 37.9 kda protein in bio3-hxt17 PDBTitle: crystal structure of saccharomyces cerevisiae yn9a protein,2 new york structural genomics consortium 6 c1z45A_ 100.0 22 PDB header:isomerase Chain: A: PDB Molecule:gal10 bifunctional protein; PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces3 cerevisiae complexed with nad, udp-glucose, and galactose 7 d1lura_ 100.0 22 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 8 d1nsza_ 100.0 20 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Aldose 1-epimerase (mutarotase) 9 c3os7B_ 100.0 19 PDB header:isomerase Chain: B: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution 10 c3os7D_ 100.0 19 PDB header:isomerase Chain: D: PDB Molecule:galactose mutarotase-like protein; PDBTitle: crystal structure of a galactose mutarotase-like protein (ca_c0697)2 from clostridium acetobutylicum at 1.80 a resolution 11 c3dcdA_ 100.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from2 lactobacillus acidophilus at the resolution 1.9a. northeast3 structural genomics consortium target lar33. 12 c3q1nA_ 100.0 20 PDB header:isomerase Chain: A: PDB Molecule:galactose mutarotase related enzyme; PDBTitle: crystal structure of a galactose mutarotase-like protein (lsei_2598)2 from lactobacillus casei atcc 334 at 1.61 a resolution 13 c3mwxA_ 100.0 22 PDB header:isomerase Chain: A: PDB Molecule:aldose 1-epimerase; PDBTitle: crystal structure of a putative galactose mutarotase (bsu18360) from2 bacillus subtilis at 1.45 a resolution 14 c3k25B_ 100.0 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1438 protein; PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112 15 c2cisA_ 100.0 13 PDB header:isomerase Chain: A: PDB Molecule:hexose-6-phosphate mutarotase; PDBTitle: structure-based functional annotation: yeast ymr099c codes2 for a d-hexose-6-phosphate mutarotase. complex with3 tagatose-6-phosphate 16 c2htbB_ 100.0 15 PDB header:isomerase Chain: B: PDB Molecule:putative enzyme related to aldose 1-epimerase; PDBTitle: crystal structure of a putative mutarotase (yead) from2 salmonella typhimurium in monoclinic form 17 d1jova_ 100.0 18 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Hypothetical protein HI1317 18 c3ty1B_ 100.0 11 PDB header:isomerase Chain: B: PDB Molecule:hypothetical aldose 1-epimerase; PDBTitle: crystal structure of a hypothetical aldose 1-epimerase (kpn_04629)2 from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.90 a3 resolution 19 c3blcB_ 98.1 12 PDB header:chaperone,protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: crystal structure of the periplasmic domain of the escherichia coli2 yidc 20 c3bs6B_ 98.1 10 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:inner membrane protein oxaa; PDBTitle: 1.8 angstrom crystal structure of the periplasmic domain of2 the membrane insertase yidc 21 d1jz8a4 not modelled 93.2 12 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:beta-Galactosidase, domain 5 22 c2yfnA_ not modelled 89.8 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask; PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask 23 c2xn1B_ not modelled 89.0 10 PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase; PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris 24 c3rgbA_ not modelled 86.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 25 c1yewI_ not modelled 86.3 14 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 26 c3mi6A_ not modelled 83.2 11 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11. 27 c3rfrI_ not modelled 82.2 17 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 28 c3bgaB_ not modelled 75.3 17 PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 29 c1jz6C_ not modelled 74.5 14 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole 30 c3mv14_ not modelled 71.1 14 PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium 31 c1so9A_ not modelled 65.5 10 PDB header:metal transport Chain: A: PDB Molecule:cytochrome c oxidase assembly protein ctag; PDBTitle: solution structure of apocox11, 30 structures 32 d1so9a_ not modelled 65.5 10 Fold:Ctag/Cox11 Superfamily:Ctag/Cox11 Family:Ctag/Cox11 33 d1ejxb_ not modelled 63.0 17 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 34 d4ubpb_ not modelled 62.3 26 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 35 d1e9ya1 not modelled 52.4 22 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 36 c3qgaD_ not modelled 50.7 22 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 37 d1ji1a2 not modelled 49.2 8 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 38 c3qbtH_ not modelled 47.2 26 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 39 c1e9zA_ not modelled 44.9 22 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 40 c3obaA_ not modelled 39.7 9 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis 41 d1nkga3 not modelled 38.0 11 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Rhamnogalacturonase B, RhgB, N-terminal domain 42 c1nkgA_ not modelled 32.3 11 PDB header:lyase Chain: A: PDB Molecule:rhamnogalacturonase b; PDBTitle: rhamnogalacturonan lyase from aspergillus aculeatus 43 d1wzla2 not modelled 25.0 17 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 44 c3isyA_ not modelled 24.4 6 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 45 c2r39A_ not modelled 19.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus 46 c2x3bB_ not modelled 19.6 13 PDB header:hydrolase Chain: B: PDB Molecule:toxic extracellular endopeptidase; PDBTitle: asap1 inactive mutant e294a, an extracellular toxic zinc2 metalloendopeptidase 47 c3ac0B_ not modelled 16.7 20 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 48 c2cqtA_ not modelled 16.2 9 PDB header:transferase Chain: A: PDB Molecule:cellobiose phosphorylase; PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate 49 d2je8a2 not modelled 15.1 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 50 c2zf9D_ not modelled 12.6 15 PDB header:structural protein Chain: D: PDB Molecule:scae cell-surface anchored scaffoldin protein; PDBTitle: crystal structure of a type iii cohesin module from the cellulosomal2 scae cell-surface anchoring scaffoldin of ruminococcus flavefaciens 51 c2kl8A_ not modelled 11.5 31 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 52 d1cc3a_ not modelled 10.7 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 53 d1g94a1 not modelled 10.4 21 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 54 d1cx1a_ not modelled 9.8 18 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:CBM4/9 55 d1nbca_ not modelled 9.0 15 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 56 c3cfuA_ not modelled 8.7 33 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 57 c1v7wA_ not modelled 8.6 11 PDB header:transferase Chain: A: PDB Molecule:chitobiose phosphorylase; PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac 58 d1gu3a_ not modelled 8.1 18 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:CBM4/9 59 d1v7wa2 not modelled 8.1 12 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Glycosyltransferase family 36 N-terminal domain 60 d1ktba1 not modelled 8.0 14 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 61 d1g43a_ not modelled 7.9 5 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 62 c3zqwA_ not modelled 7.7 15 PDB header:carbohydrate-binding protein Chain: A: PDB Molecule:cellulosomal scaffoldin; PDBTitle: structure of cbm3b of major scaffoldin subunit scaa from2 acetivibrio cellulolyticus 63 c2l8aA_ not modelled 7.6 9 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: structure of a novel cbm3 lacking the calcium-binding site 64 d1dkza2 not modelled 7.4 23 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain Family:Heat shock protein 70kD (HSP70), peptide-binding domain 65 d2ccwa1 not modelled 7.3 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 66 c3dqgC_ not modelled 7.0 13 PDB header:chaperone Chain: C: PDB Molecule:heat shock 70 kda protein f; PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans. 67 d1u00a2 not modelled 6.7 20 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain Family:Heat shock protein 70kD (HSP70), peptide-binding domain 68 c3qfgA_ not modelled 6.6 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: structure of a putative lipoprotein from staphylococcus aureus subsp.2 aureus nctc 8325 69 d1cuoa_ not modelled 6.4 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 70 d3dhpa1 not modelled 6.4 19 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 71 d1mspa_ not modelled 6.4 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 72 c2wo4A_ not modelled 6.3 19 PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase, family 9; PDBTitle: 3b' carbohydrate-binding module from the cel9v glycoside2 hydrolase from clostridium thermocellum, in-house data 73 d2vzsa2 not modelled 6.2 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 74 d3es6b1 not modelled 6.0 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:SVA-like 75 d2j5wa3 not modelled 5.9 0 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 76 d1hfua2 not modelled 5.8 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 77 d2f2ha2 not modelled 5.8 8 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:YicI N-terminal domain-like 78 d1azca_ not modelled 5.6 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 79 c3tdqB_ not modelled 5.6 19 PDB header:cell adhesion Chain: B: PDB Molecule:pily2 protein; PDBTitle: crystal structure of a fimbrial biogenesis protein pily22 (pily2_pa4555) from pseudomonas aeruginosa pao1 at 2.10 a resolution 80 d1jaea1 not modelled 5.2 16 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 81 c2aenH_ not modelled 5.2 12 PDB header:viral protein Chain: H: PDB Molecule:outer capsid protein vp4, vp8* core; PDBTitle: crystal structure of the rotavirus strain ds-1 vp8* core

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0