Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	T	P	I	E	L	K	G	S	S	F	T	L	S	V	V	H	L	H	E	A	E	P	K	V	I	H	Q	A	L	E	D	K	I	A	Q	A	P	A	F	L	K	H	A	P	V	V	L	N	V	S	A	L	E	D	P	V	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																		?		?	?		?											?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	S	A	M	H	K	A	V	S	A	T	G	L	R	V	I	G	V	S	G	C	K	D	A	Q	L	K	A	E	I	E	K	M	G	L	P	I	L	T	E	G	K	E	K	A	P	R	P	A	P	T	P	Q	A	P	A	Q	N	T	T
Secondary structure
SS confidence
Disorder																																					?			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	V	T	K	T	R	L	I	D	T	P	V	R	S	G	Q	R	I	Y	A	P	Q	C	D	L	I	V	T	S	H	V	S	A	G	A	E	L	I	A	D	G	N	I	H	V	Y	G	M	M	R	G	R	A	L	A	G	A	S	G	D
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence		R	E	T	Q	I	F	C	T	N	L	M	A	E	L	V	S	I	A	G	E	Y	W	L	S	D	Q	I	P	A	E	F	Y	G	K	A	A	R	L	Q	L	V	E	N	A	L	T	V	Q	P	L	N
Secondary structure
SS confidence
Disorder																												?	?	?	?	?																			?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1hf2 chain A Region: 6 - 231 Aligned: 189 Modelled: 194 Confidence: 100.0% Identity: 23% PDB header:cell division protein Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the bacterial cell-division inhibitor2 minc from t. maritima Phyre2 PDB 1hf2 chain A domain 1 Region: 124 - 231 Aligned: 103 Modelled: 108 Confidence: 100.0% Identity: 27% Fold: Single-stranded right-handed beta-helix Superfamily: Cell-division inhibitor MinC, C-terminal domain Family: Cell-division inhibitor MinC, C-terminal domain Phyre2 PDB 3ghf chain A Region: 5 - 104 Aligned: 100 Modelled: 100 Confidence: 99.8% Identity: 83% PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium Phyre2 PDB 1hf2 chain A domain 2 Region: 6 - 82 Aligned: 77 Modelled: 77 Confidence: 98.5% Identity: 16% Fold: Cell-division inhibitor MinC, N-terminal domain Superfamily: Cell-division inhibitor MinC, N-terminal domain Family: Cell-division inhibitor MinC, N-terminal domain Phyre2 PDB 1tf2 chain A Region: 25 - 197 Aligned: 118 Modelled: 132 Confidence: 90.6% Identity: 25% PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis Phyre2 PDB 1nl3 chain B Region: 23 - 199 Aligned: 132 Modelled: 139 Confidence: 86.7% Identity: 27% PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form Phyre2 PDB 3dl8 chain B Region: 13 - 199 Aligned: 134 Modelled: 149 Confidence: 84.1% Identity: 22% PDB header:protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca Phyre2 PDB 3din chain B Region: 13 - 199 Aligned: 134 Modelled: 149 Confidence: 83.0% Identity: 25% PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase Phyre2 PDB 3jux chain A Region: 23 - 199 Aligned: 128 Modelled: 139 Confidence: 82.2% Identity: 25% PDB header:protein transport Chain: A: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima Phyre2 PDB 2fsg chain A Region: 25 - 199 Aligned: 126 Modelled: 137 Confidence: 81.9% Identity: 25% PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli Phyre2 PDB 1nkt chain A domain 4 Region: 25 - 199 Aligned: 126 Modelled: 137 Confidence: 79.0% Identity: 29% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 1mzv chain A Region: 24 - 188 Aligned: 163 Modelled: 165 Confidence: 75.7% Identity: 15% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 2vda chain A Region: 25 - 199 Aligned: 128 Modelled: 137 Confidence: 74.2% Identity: 26% PDB header:protein transport Chain: A: PDB Molecule:translocase subunit seca; PDBTitle: solution structure of the seca-signal peptide complex Phyre2 PDB 2dy0 chain A Region: 23 - 149 Aligned: 125 Modelled: 127 Confidence: 65.4% Identity: 13% PDB header:transferase Chain: A: PDB Molecule:adenine phosphoribosyltransferase; PDBTitle: crystal structure of project jw0458 from escherichia coli Phyre2 PDB 2pfu chain A Region: 2 - 78 Aligned: 73 Modelled: 77 Confidence: 61.4% Identity: 12% PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli Phyre2 PDB 2ipc chain B Region: 156 - 199 Aligned: 42 Modelled: 42 Confidence: 53.1% Identity: 29% PDB header:transport protein Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer Phyre2 PDB 1zun chain B domain 1 Region: 120 - 208 Aligned: 77 Modelled: 89 Confidence: 41.3% Identity: 18% Fold: Reductase/isomerase/elongation factor common domain Superfamily: Translation proteins Family: Elongation factors Phyre2 PDB 3l7n chain A Region: 59 - 194 Aligned: 112 Modelled: 133 Confidence: 40.1% Identity: 8% PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c Phyre2 PDB 1g2q chain A Region: 23 - 149 Aligned: 125 Modelled: 127 Confidence: 37.6% Identity: 13% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 1o57 chain A domain 2 Region: 24 - 149 Aligned: 120 Modelled: 126 Confidence: 37.1% Identity: 13% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 1 c1hf2A_ 2 d1hf2a1 3 c3ghfA_ 4 d1hf2a2 5 c1tf2A_ 6 c1nl3B_ 7 c3dl8B_ 8 c3dinB_ 9 c3juxA_ 10 c2fsgA_ 11 d1nkta4 12 d1mzva_ 13 c2vdaA_ 14 c2dy0A_ 15 c2pfuA_ 16 c2ipcB_ 17 d1zunb1 18 c3l7nA_ 19 d1g2qa_ 20 d1o57a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1hf2A_ 100.0 23 PDB header:cell division protein Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the bacterial cell-division inhibitor2 minc from t. maritima 2 d1hf2a1 100.0 27 Fold:Single-stranded right-handed beta-helix Superfamily:Cell-division inhibitor MinC, C-terminal domain Family:Cell-division inhibitor MinC, C-terminal domain 3 c3ghfA_ 99.8 83 PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium 4 d1hf2a2 98.5 16 Fold:Cell-division inhibitor MinC, N-terminal domain Superfamily:Cell-division inhibitor MinC, N-terminal domain Family:Cell-division inhibitor MinC, N-terminal domain 5 c1tf2A_ 90.6 25 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis 6 c1nl3B_ 86.7 27 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form 7 c3dl8B_ 84.1 22 PDB header:protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 8 c3dinB_ 83.0 25 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 9 c3juxA_ 82.2 25 PDB header:protein transport Chain: A: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima 10 c2fsgA_ 81.9 25 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli 11 d1nkta4 79.0 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 12 d1mzva_ 75.7 15 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 13 c2vdaA_ 74.2 26 PDB header:protein transport Chain: A: PDB Molecule:translocase subunit seca; PDBTitle: solution structure of the seca-signal peptide complex 14 c2dy0A_ 65.4 13 PDB header:transferase Chain: A: PDB Molecule:adenine phosphoribosyltransferase; PDBTitle: crystal structure of project jw0458 from escherichia coli 15 c2pfuA_ 61.4 12 PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli 16 c2ipcB_ 53.1 29 PDB header:transport protein Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer 17 d1zunb1 41.3 18 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 18 c3l7nA_ 40.1 8 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 19 d1g2qa_ 37.6 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 20 d1o57a2 37.1 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 21 d1n0ua1 not modelled 36.8 33 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 22 c2jwlB_ not modelled 33.3 6 PDB header:membrane protein Chain: B: PDB Molecule:protein tolr; PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data 23 c3k4iC_ not modelled 31.0 20 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein pspto_3204 from2 pseudomonas syringae pv. tomato str. dc3000 24 d2bv3a1 not modelled 27.3 21 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 25 d1jnya1 not modelled 26.4 15 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 26 c2i5kB_ not modelled 26.3 19 PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p 27 d1o1ya_ not modelled 24.1 10 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 28 c2zwaA_ not modelled 23.9 17 PDB header:transferase Chain: A: PDB Molecule:leucine carboxyl methyltransferase 2; PDBTitle: crystal structure of trna wybutosine synthesizing enzyme2 tyw4 29 c3cr8C_ not modelled 23.9 8 PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans 30 d1l1qa_ not modelled 22.4 12 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 31 d1qb7a_ not modelled 21.9 15 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 32 d2f69a1 not modelled 21.4 29 Fold:open-sided beta-meander Superfamily:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Family:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 33 d1f60a1 not modelled 20.0 12 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 34 c2idcA_ not modelled 19.9 17 PDB header:replication/chaperone Chain: A: PDB Molecule:anti-silencing protein 1 and histone h3 chimera; PDBTitle: structure of the histone h3-asf1 chaperone interaction 35 d1roca_ not modelled 18.8 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:ASF1-like Family:ASF1-like 36 d2icya1 not modelled 17.9 24 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 37 c2i32A_ not modelled 17.8 22 PDB header:replication chaperone Chain: A: PDB Molecule:anti-silencing factor 1 paralog a; PDBTitle: structure of a human asf1a-hira complex and insights into2 specificity of histone chaperone complex assembly 38 d2i32a1 not modelled 17.8 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:ASF1-like Family:ASF1-like 39 d2c78a1 not modelled 16.7 10 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 40 d1v30a_ not modelled 16.6 56 Fold:Gamma-glutamyl cyclotransferase-like Superfamily:Gamma-glutamyl cyclotransferase-like Family:Gamma-glutamyl cyclotransferase-like 41 c3es1A_ not modelled 16.6 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution 42 d1mvfd_ not modelled 16.6 22 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 43 d2exda1 not modelled 16.6 18 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 44 c3agqA_ not modelled 16.5 9 PDB header:translation,transferase Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q PDBTitle: structure of viral polymerase form ii 45 c3tr5C_ not modelled 16.4 18 PDB header:translation Chain: C: PDB Molecule:peptide chain release factor 3; PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii 46 d2cu9a1 not modelled 16.1 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:ASF1-like Family:ASF1-like 47 c2eqaA_ not modelled 14.7 18 PDB header:rna binding protein Chain: A: PDB Molecule:hypothetical protein st1526; PDBTitle: crystal structure of the hypothetical sua5 protein from2 sulfolobus tokodaii 48 c3k13A_ not modelled 14.1 17 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 49 d1vkba_ not modelled 14.0 44 Fold:Gamma-glutamyl cyclotransferase-like Superfamily:Gamma-glutamyl cyclotransferase-like Family:Gamma-glutamyl cyclotransferase-like 50 c2h5eB_ not modelled 13.7 16 PDB header:translation Chain: B: PDB Molecule:peptide chain release factor rf-3; PDBTitle: crystal structure of e.coli polypeptide release factor rf3 51 d1q1oa_ not modelled 13.5 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 52 c2wmkB_ not modelled 13.3 14 PDB header:hydrolase Chain: B: PDB Molecule:fucolectin-related protein; PDBTitle: crystal structure of the catalytic module of a family 982 glycoside hydrolase from streptococcus pneumoniae sp3-bs713 (sp3gh98) in complex with the a-lewisy pentasaccharide4 blood group antigen. 53 c2xexA_ not modelled 13.1 13 PDB header:translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g 54 d1dcsa_ not modelled 13.0 16 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Penicillin synthase-like 55 c3mezA_ not modelled 12.7 15 PDB header:sugar binding protein Chain: A: PDB Molecule:mannose-specific lectin 3 chain 1; PDBTitle: x-ray structural analysis of a mannose specific lectin from dutch2 crocus (crocus vernus) 56 c2kl8A_ not modelled 12.2 23 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 57 d1iqoa_ not modelled 12.2 21 Fold:Hypothetical protein MTH1880 Superfamily:Hypothetical protein MTH1880 Family:Hypothetical protein MTH1880 58 d1pqsa_ not modelled 11.8 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 59 c3l83A_ not modelled 11.7 15 PDB header:transferase Chain: A: PDB Molecule:glutamine amido transferase; PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus 60 c3jubA_ not modelled 11.3 38 PDB header:transferase Chain: A: PDB Molecule:aig2-like domain-containing protein 1; PDBTitle: human gamma-glutamylamine cyclotransferase 61 d1omwa2 not modelled 11.1 15 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 62 c2rdo7_ not modelled 10.8 13 PDB header:ribosome Chain: 7: PDB Molecule:elongation factor g; PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound 63 c2k5hA_ not modelled 10.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 64 d1vm6a3 not modelled 10.2 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 65 c3uotB_ not modelled 10.0 13 PDB header:cell cycle Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1; PDBTitle: crystal structure of mdc1 fha domain in complex with a phosphorylated2 peptide from the mdc1 n-terminus 66 c3cb4D_ not modelled 10.0 14 PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa 67 d1xhsa_ not modelled 10.0 56 Fold:Gamma-glutamyl cyclotransferase-like Superfamily:Gamma-glutamyl cyclotransferase-like Family:Gamma-glutamyl cyclotransferase-like 68 c2g0qA_ not modelled 9.8 44 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:at5g39720.1 protein; PDBTitle: solution structure of at5g39720.1 from arabidopsis thaliana 69 c2vu9A_ not modelled 9.6 16 PDB header:hydrolase Chain: A: PDB Molecule:botulinum neurotoxin a heavy chain; PDBTitle: crystal structure of botulinum neurotoxin serotype a2 binding domain in complex with gt1b 70 c2bm0A_ not modelled 9.5 15 PDB header:elongation factor Chain: A: PDB Molecule:elongation factor g; PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a 71 c1qysA_ not modelled 9.4 21 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 72 d1od5a2 not modelled 9.2 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 73 d2cvoa2 not modelled 9.1 16 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 74 c3k3sG_ not modelled 8.9 17 PDB header:hydrolase Chain: G: PDB Molecule:altronate hydrolase; PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri. 75 c2q4jB_ not modelled 8.9 16 PDB header:transferase Chain: B: PDB Molecule:probable utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at3g03250, a putative udp-glucose3 pyrophosphorylase 76 c2jqvA_ not modelled 8.8 44 PDB header:structural genomics Chain: A: PDB Molecule:aig2 protein-like; PDBTitle: solution structure at3g28950.1 from arabidopsis thaliana 77 c3cgiD_ not modelled 8.8 36 PDB header:unknown function Chain: D: PDB Molecule:propanediol utilization protein pduu; PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment 78 c3mmyE_ not modelled 8.8 16 PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 79 d1ip9a_ not modelled 8.7 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 80 c2d5nB_ not modelled 8.7 18 PDB header:hydrolase, oxidoreductase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis 81 c2qikA_ not modelled 8.7 50 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0131 protein ykqa; PDBTitle: crystal structure of ykqa from bacillus subtilis. northeast2 structural genomics target sr631 82 d1ofda1 not modelled 8.7 14 Fold:Single-stranded right-handed beta-helix Superfamily:Alpha subunit of glutamate synthase, C-terminal domain Family:Alpha subunit of glutamate synthase, C-terminal domain 83 c2jvfA_ not modelled 8.7 18 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 84 c2glvA_ not modelled 8.6 15 PDB header:lyase Chain: A: PDB Molecule:(3r)-hydroxymyristoyl-acyl carrier protein PDBTitle: crystal structure of (3r)-hydroxyacyl-acyl carrier protein2 dehydratase(fabz) mutant(y100a) from helicobacter pylori 85 c3r0eC_ not modelled 8.5 36 PDB header:sugar binding protein Chain: C: PDB Molecule:lectin; PDBTitle: structure of remusatia vivipara lectin 86 c2qv3A_ not modelled 8.2 57 PDB header:toxin Chain: A: PDB Molecule:vacuolating cytotoxin; PDBTitle: crystal structure of the helicobacter pylori vacuolating toxin p552 domain 87 d2dy1a1 not modelled 7.7 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 88 c3b8hA_ not modelled 7.7 24 PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex 89 c3ia0c_ not modelled 7.6 27 PDB header:structural protein Chain: C: PDB Molecule:ethanolamine utilization protein euts; PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant 90 c2jw5A_ not modelled 7.5 12 PDB header:protein binding Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: polymerase lambda brct domain 91 d1y13a_ not modelled 7.5 19 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:6-pyruvoyl tetrahydropterin synthase 92 c3jx9B_ not modelled 7.4 18 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of putative phosphoheptose isomerase2 (yp_001815198.1) from exiguobacterium sp. 255-15 at 1.95 a resolution 93 c1g2cN_ not modelled 7.4 22 PDB header:viral protein Chain: N: PDB Molecule:fusion protein (f); PDBTitle: human respiratory syncytial virus fusion protein core 94 d2gsaa_ not modelled 7.4 3 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 95 c2w18A_ not modelled 7.1 30 PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 96 d1diha1 not modelled 7.1 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 97 d1d9ea_ not modelled 7.0 9 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 98 c3mkqA_ not modelled 7.0 9 PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat 99 d1fxza2 not modelled 7.0 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0