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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2qv3A_

Fold library idPDB HeaderMoleculeTitle
c2qv3A_PDB header: toxinChain: A: PDB Molecule: vacuolating cytotoxin;PDBTitle: crystal structure of the helicobacter pylori vacuolating2 toxin p55 domain


Added to library: Tue Mar 16 13:00:51 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TVVNIDRINTKAASLTTNAAHLNIGKGGVNLSNQASGRTLLVENLTGNITVDGPLRVNNQVGGYALAGSS
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Known secondary structure (DSSP)






SS
SSSSSS
SSS
S
TTBTT



TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence ANFEFKAGVDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTNKVNINKLITAS
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Known secondary structure (DSSP) STTTS


S


TT
TT
SSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TNVAVKNFNINELIVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIFSGGVKFKSGEKLVIDEFYY
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Known secondary structure (DSSP)
SS


TT
SS


TTT


STT




 .........220.........230.........240.........250.........260.........270.........280
Sequence SPWNYFDARNIKNVEITRKFASSTPENPWGTSKLMFNNLTLGQNAVMDYSQFSNLTIQGDFINNQGTINY
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Known secondary structure (DSSP)
SS
SSTTS

S

TT

TTSS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence LVRGGKVATLNVGNAAAMMFNNDIDSATGFYKPLIKINSAQDLIKNTEHVLLKAKIIGYGNVSTGTNGIS
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Known secondary structure (DSSP)
BTTB


BSS


B
TTTSSB

STGGGS
SSS
STT
SSSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence NVNLEEQFKERLALYNNNNRMDTCVVRNTDDIKACGMAIGNQSMVNNPDNYKYLIGKAWKNIGISKTANG
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Known secondary structure (DSSP) SS
TTTT
SSST

GGGGGGGTT
TT
S
 .........430.........440.......
Sequence SKISVYYLGNSTPTENGGNTTNLPTNT
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Known secondary structure (DSSP) S






TT








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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