Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	I	V	V	S	K	F	G	G	T	S	V	A	D	F	D	A	M	N	R	S	A	D	I	V	L	S	D	A	N	V	R	L	V	V	L	S	A	S	A	G	I	T	N	L	L	V	A	L	A	E	G	L	E	P	G	E	R
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	E	K	L	D	A	I	R	N	I	Q	F	A	I	L	E	R	L	R	Y	P	N	V	I	R	E	E	I	E	R	L	L	E	N	I	T	V	L	A	E	A	A	A	L	A	T	S	P	A	L	T	D	E	L	V	S	H	G	E	L
Secondary structure
SS confidence
Disorder																																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	S	T	L	L	F	V	E	I	L	R	E	R	D	V	Q	A	Q	W	F	D	V	R	K	V	M	R	T	N	D	R	F	G	R	A	E	P	D	I	A	A	L	A	E	L	A	A	L	Q	L	L	P	R	L	N	E	G	L	V	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	Q	G	F	I	G	S	E	N	K	G	R	T	T	T	L	G	R	G	G	S	D	Y	T	A	A	L	L	A	E	A	L	H	A	S	R	V	D	I	W	T	D	V	P	G	I	Y	T	T	D	P	R	V	V	S	A	A	K	R	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	E	I	A	F	A	E	A	A	E	M	A	T	F	G	A	K	V	L	H	P	A	T	L	L	P	A	V	R	S	D	I	P	V	F	V	G	S	S	K	D	P	R	A	G	G	T	L	V	C	N	K	T	E	N	P	P	L	F	R
Secondary structure
SS confidence
Disorder																																													?									?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	L	A	L	R	R	N	Q	T	L	L	T	L	H	S	L	N	M	L	H	S	R	G	F	L	A	E	V	F	G	I	L	A	R	H	N	I	S	V	D	L	I	T	T	S	E	V	S	V	A	L	T	L	D	T	T	G	S	T	S
Secondary structure
SS confidence
Disorder																	?		?	?	?																																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		T	G	D	T	L	L	T	Q	S	L	L	M	E	L	S	A	L	C	R	V	E	V	E	E	G	L	A	L	V	A	L	I	G	N	D	L	S	K	A	C	G	V	G	K	E	V	F	G	V	L	E	P	F	N	I	R	M	I	C	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Sequence		G	A	S	S	H	N	L	C	F	L	V	P	G	E	D	A	E	Q	V	V	Q	K	L	H	S	N	L	F	E
Secondary structure
SS confidence
Disorder																													?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j0w chain A Region: 3 - 449 Aligned: 447 Modelled: 447 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) Phyre2 PDB 2cdq chain B Region: 1 - 449 Aligned: 445 Modelled: 449 Confidence: 100.0% Identity: 34% PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine Phyre2 PDB 3c1n chain A Region: 5 - 449 Aligned: 440 Modelled: 442 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine Phyre2 PDB 3l76 chain B Region: 4 - 448 Aligned: 382 Modelled: 398 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis Phyre2 PDB 3ab4 chain K Region: 4 - 448 Aligned: 361 Modelled: 373 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine Phyre2 PDB 2cdq chain A domain 1 Region: 5 - 296 Aligned: 291 Modelled: 292 Confidence: 100.0% Identity: 33% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2j0w chain A domain 1 Region: 3 - 294 Aligned: 292 Modelled: 292 Confidence: 100.0% Identity: 100% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2hmf chain A domain 1 Region: 5 - 294 Aligned: 287 Modelled: 287 Confidence: 100.0% Identity: 35% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 1ybd chain A domain 1 Region: 2 - 289 Aligned: 212 Modelled: 224 Confidence: 100.0% Identity: 21% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2e9y chain A Region: 3 - 291 Aligned: 279 Modelled: 288 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 Phyre2 PDB 2bne chain A domain 1 Region: 1 - 291 Aligned: 212 Modelled: 218 Confidence: 100.0% Identity: 25% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 3k4y chain B Region: 4 - 290 Aligned: 220 Modelled: 244 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: crystal structure of isopentenyl phosphate kinase from m. jannaschii2 in complex with ipp Phyre2 PDB 3ll9 chain A Region: 3 - 289 Aligned: 223 Modelled: 233 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: x-ray structures of isopentenyl phosphate kinase Phyre2 PDB 3ek5 chain A Region: 3 - 292 Aligned: 214 Modelled: 238 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium Phyre2 PDB 2a1f chain A domain 1 Region: 1 - 290 Aligned: 207 Modelled: 229 Confidence: 100.0% Identity: 24% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 1z9d chain A domain 1 Region: 3 - 292 Aligned: 213 Modelled: 225 Confidence: 100.0% Identity: 24% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 1gs5 chain A Region: 1 - 289 Aligned: 236 Modelled: 248 Confidence: 100.0% Identity: 19% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 1e19 chain A Region: 3 - 291 Aligned: 280 Modelled: 282 Confidence: 99.9% Identity: 15% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: Carbamate kinase Phyre2 PDB 3nwy chain B Region: 1 - 291 Aligned: 210 Modelled: 220 Confidence: 99.9% Identity: 25% PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis Phyre2 PDB 2buf chain A domain 1 Region: 3 - 293 Aligned: 232 Modelled: 242 Confidence: 99.9% Identity: 20% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 1 c2j0wA_ 2 c2cdqB_ 3 c3c1nA_ 4 c3l76B_ 5 c3ab4K_ 6 d2cdqa1 7 d2j0wa1 8 d2hmfa1 9 d1ybda1 10 c2e9yA_ 11 d2bnea1 12 c3k4yB_ 13 c3ll9A_ 14 c3ek5A_ 15 d2a1fa1 16 d1z9da1 17 d1gs5a_ 18 d1e19a_ 19 c3nwyB_ 20 d2bufa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2j0wA_ 100.0 100 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 2 c2cdqB_ 100.0 34 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 3 c3c1nA_ 100.0 30 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 4 c3l76B_ 100.0 30 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 5 c3ab4K_ 100.0 27 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 6 d2cdqa1 100.0 33 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 7 d2j0wa1 100.0 100 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 8 d2hmfa1 100.0 35 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 9 d1ybda1 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 10 c2e9yA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 11 d2bnea1 100.0 25 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 12 c3k4yB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: crystal structure of isopentenyl phosphate kinase from m. jannaschii2 in complex with ipp 13 c3ll9A_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: x-ray structures of isopentenyl phosphate kinase 14 c3ek5A_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium 15 d2a1fa1 100.0 24 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 16 d1z9da1 100.0 24 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 17 d1gs5a_ 100.0 19 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 18 d1e19a_ 99.9 15 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 19 c3nwyB_ 99.9 25 PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis 20 d2bufa1 99.9 20 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 21 c2jjxC_ not modelled 99.9 20 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: the crystal structure of ump kinase from bacillus anthracis2 (ba1797) 22 c3l86A_ not modelled 99.9 19 PDB header:transferase Chain: A: PDB Molecule:acetylglutamate kinase; PDBTitle: the crystal structure of smu.665 from streptococcus mutans ua159 23 c2rd5A_ not modelled 99.9 18 PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 24 d2brxa1 not modelled 99.9 26 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 25 d1b7ba_ not modelled 99.9 16 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 26 c3ll5C_ not modelled 99.9 18 PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyl kinase related protein; PDBTitle: crystal structure of t. acidophilum isopentenyl phosphate kinase2 product complex 27 d2ij9a1 not modelled 99.9 25 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 28 c2zhoB_ not modelled 99.9 20 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form) 29 c2egxA_ not modelled 99.9 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acetylglutamate kinase; PDBTitle: crystal structure of the putative acetylglutamate kinase from thermus2 thermophilus 30 c2va1A_ not modelled 99.9 23 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of ump kinase from ureaplasma parvum 31 c2dtjA_ not modelled 99.9 19 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: crystal structure of regulatory subunit of aspartate kinase2 from corynebacterium glutamicum 32 c3mahA_ not modelled 99.9 29 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83. 33 d2btya1 not modelled 99.9 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 34 c2re1A_ not modelled 99.9 18 PDB header:transferase Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits; PDBTitle: crystal structure of aspartokinase alpha and beta subunits 35 d2akoa1 not modelled 99.9 17 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 36 c2j4kC_ not modelled 99.9 23 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of uridylate kinase from sulfolobus2 solfataricus in complex with ump to 2.2 angstrom3 resolution 37 c2v5hB_ not modelled 99.9 17 PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 38 c2w21A_ not modelled 99.9 22 PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. 39 c3d40A_ not modelled 99.9 22 PDB header:transferase Chain: A: PDB Molecule:foma protein; PDBTitle: crystal structure of fosfomycin resistance kinase foma from2 streptomyces wedmorensis complexed with diphosphate 40 d2ap9a1 not modelled 99.9 24 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 41 c2j5tF_ not modelled 99.9 21 PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate 42 c2ogxB_ not modelled 99.8 24 PDB header:metal binding protein Chain: B: PDB Molecule:molybdenum storage protein subunit beta; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 43 c3kzfC_ not modelled 99.8 19 PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase 44 c2ogxA_ not modelled 99.8 24 PDB header:metal binding protein Chain: A: PDB Molecule:molybdenum storage protein subunit alpha; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 45 c2f06B_ not modelled 99.6 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 46 c2r98A_ not modelled 99.6 18 PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae 47 d2j0wa3 not modelled 99.5 100 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 48 d2hmfa2 not modelled 99.4 28 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 49 d2cdqa3 not modelled 99.4 40 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 50 d2hmfa3 not modelled 99.3 21 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 51 d2cdqa2 not modelled 99.2 37 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 52 d2j0wa2 not modelled 99.1 100 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 53 c2nyiB_ not modelled 96.5 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 54 c1u8sB_ not modelled 95.9 14 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 55 c1zhvA_ not modelled 93.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu0741; PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8. 56 d1zhva2 not modelled 92.3 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 57 c2fgcA_ not modelled 91.5 19 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima 58 c2pc6C_ not modelled 89.8 13 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 59 c2f1fA_ not modelled 88.5 14 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli 60 d2f06a1 not modelled 88.5 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 61 d1zvpa2 not modelled 87.5 21 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 62 c1zvpB_ not modelled 87.3 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein vc0802; PDBTitle: crystal structure of a protein of unknown function vc0802 from vibrio2 cholerae, possible transport protein 63 d2pc6a2 not modelled 83.9 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 64 d2fgca2 not modelled 83.7 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 65 d2f1fa1 not modelled 82.7 12 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 66 d1ygya3 not modelled 81.5 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 67 d2f06a2 not modelled 78.3 29 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 68 d1sc6a3 not modelled 77.3 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 69 d1u8sa2 not modelled 76.3 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 70 c3nrbD_ not modelled 76.3 16 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 71 c2qmxB_ not modelled 75.9 13 PDB header:ligase Chain: B: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of l-phe inhibited prephenate dehydratase from2 chlorobium tepidum tls 72 d1zpva1 not modelled 75.4 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 73 c3ibwA_ not modelled 74.1 17 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 74 d1phza1 not modelled 70.8 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 75 d1u8sa1 not modelled 70.3 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 76 c3mwbA_ not modelled 68.8 16 PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a 77 c1ygyA_ not modelled 64.9 8 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 78 d2qmwa2 not modelled 62.5 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 79 c2qmwA_ not modelled 58.7 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of the prephenate dehydratase (pdt) from2 staphylococcus aureus subsp. aureus mu50 80 c3luyA_ not modelled 56.1 7 PDB header:isomerase Chain: A: PDB Molecule:probable chorismate mutase; PDBTitle: putative chorismate mutase from bifidobacterium adolescentis 81 c2vcbA_ not modelled 44.9 16 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylglucosaminidase; PDBTitle: family 89 glycoside hydrolase from clostridium perfringens2 in complex with pugnac 82 d1a9xa4 not modelled 42.4 15 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 83 c2k4mA_ not modelled 40.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0146 protein mth_1000; PDBTitle: solution nmr structure of m. thermoautotrophicum protein2 mth_1000, northeast structural genomics consortium target3 tr8 84 c3n0vD_ not modelled 40.5 12 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 85 c2nu9E_ not modelled 39.6 31 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 86 d2g0ta1 not modelled 38.4 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 87 c3cuxA_ not modelled 35.1 21 PDB header:transferase Chain: A: PDB Molecule:malate synthase; PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design 88 c3o1lB_ not modelled 35.0 14 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 89 c3mtjA_ not modelled 34.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 90 c2fvgA_ not modelled 33.3 11 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: crystal structure of endoglucanase (tm1049) from thermotoga maritima2 at 2.01 a resolution 91 d1tzoa_ not modelled 33.3 23 Fold:Anthrax protective antigen Superfamily:Anthrax protective antigen Family:Anthrax protective antigen 92 c3nbuC_ not modelled 27.0 21 PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase 93 c3cuzA_ not modelled 25.2 20 PDB header:transferase Chain: A: PDB Molecule:malate synthase a; PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design 94 c2wu8A_ not modelled 24.4 17 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv 95 d2fvga1 not modelled 24.2 23 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 96 c3ewiB_ not modelled 24.1 21 PDB header:transferase Chain: B: PDB Molecule:n-acylneuraminate cytidylyltransferase; PDBTitle: structural analysis of the c-terminal domain of murine cmp-2 sialic acid synthetase 97 c3isrB_ not modelled 22.1 20 PDB header:hydrolase Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease; PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a 98 d1gzda_ not modelled 22.0 23 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 99 c3ljkA_ not modelled 21.4 17 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. 100 c2o2cB_ not modelled 21.2 19 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site 101 c3l7pA_ not modelled 20.8 6 PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans 102 c3hjbA_ not modelled 20.7 23 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0