Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	T	Q	W	T	R	M	T	A	N	E	A	A	E	I	I	Q	H	N	D	M	V	A	F	S	G	F	T	P	A	G	S	P	K	A	L	P	T	A	I	A	R	R	A	N	E	Q	H	E	A	K	K	P	Y	Q	I	R	L	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																									?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	G	A	S	I	S	A	A	A	D	D	V	L	S	D	A	D	A	V	S	W	R	A	P	Y	Q	T	S	S	G	L	R	K	K	I	N	Q	G	A	V	S	F	V	D	L	H	L	S	E	V	A	Q	M	V	N	Y	G	F	F	G
Secondary structure
SS confidence
Disorder																?										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	I	D	V	A	V	I	E	A	S	A	L	A	P	D	G	R	V	W	L	T	S	G	I	G	N	A	P	T	W	L	L	R	A	K	K	V	I	I	E	L	N	H	Y	H	D	P	R	V	A	E	L	A	D	I	V	I	P	G	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	P	R	R	N	S	V	S	I	F	H	A	M	D	R	V	G	T	R	Y	V	Q	I	D	P	K	K	I	V	A	V	V	E	T	N	L	P	D	A	G	N	M	L	D	K	Q	N	P	M	C	Q	Q	I	A	D	N	V	V	T	F
Secondary structure
SS confidence
Disorder																																						?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	L	Q	E	M	A	H	G	R	I	P	P	E	F	L	P	L	Q	S	G	V	G	N	I	N	N	A	V	M	A	R	L	G	E	N	P	V	I	P	P	F	M	M	Y	S	E	V	L	Q	E	S	V	V	H	L	L	E	T	G	K
Secondary structure
SS confidence
Disorder						?	?	?	?																									?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		I	S	G	A	S	A	S	S	L	T	I	S	A	D	S	L	R	K	I	Y	D	N	M	D	Y	F	A	S	R	I	V	L	R	P	Q	E	I	S	N	N	P	E	I	I	R	R	L	G	V	I	A	L	N	V	G	L	E	F	D	I
Secondary structure
SS confidence
Disorder											?	?																																		?		?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		Y	G	H	A	N	S	T	H	V	A	G	V	D	L	M	N	G	I	G	G	S	G	D	F	E	R	N	A	Y	L	S	I	F	M	A	P	S	I	A	K	E	G	K	I	S	T	V	V	P	M	C	S	H	V	D	H	S	E	H	S
Secondary structure
SS confidence
Disorder													?																										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		V	K	V	I	I	T	E	Q	G	I	A	D	L	R	G	L	S	P	L	Q	R	A	R	T	I	I	D	N	C	A	H	P	M	Y	R	D	Y	L	H	R	Y	L	E	N	A	P	G	G	H	I	H	H	D	L	S	H	V	F	D	L
Secondary structure
SS confidence
Disorder																																															?		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.
Sequence		H	R	N	L	I	A	T	G	S	M	L	G
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2nvv chain F Region: 6 - 490 Aligned: 485 Modelled: 484 Confidence: 100.0% Identity: 51% PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. Phyre2 PDB 2g39 chain A Region: 2 - 492 Aligned: 484 Modelled: 487 Confidence: 100.0% Identity: 45% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:acetyl-coa hydrolase; PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa Phyre2 PDB 3gk7 chain A Region: 3 - 472 Aligned: 415 Modelled: 429 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum Phyre2 PDB 2oas chain A Region: 8 - 468 Aligned: 406 Modelled: 411 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. Phyre2 PDB 3eh7 chain A Region: 2 - 467 Aligned: 380 Modelled: 407 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 Phyre2 PDB 3d3u chain A Region: 2 - 464 Aligned: 369 Modelled: 390 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 Phyre2 PDB 2g39 chain A domain 2 Region: 221 - 492 Aligned: 271 Modelled: 269 Confidence: 100.0% Identity: 50% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 1xr4 chain B Region: 2 - 471 Aligned: 417 Modelled: 436 Confidence: 100.0% Identity: 21% PDB header:hydrolase/transferase Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase; PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium] Phyre2 PDB 2hj0 chain A Region: 1 - 476 Aligned: 423 Modelled: 431 Confidence: 100.0% Identity: 18% PDB header:lyase Chain: A: PDB Molecule:putative citrate lyase, alfa subunit; PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target). Phyre2 PDB 2ahv chain C Region: 1 - 490 Aligned: 417 Modelled: 436 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: C: PDB Molecule:putative enzyme ydif; PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1 Phyre2 PDB 1ooy chain A Region: 5 - 482 Aligned: 401 Modelled: 434 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase, PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart Phyre2 PDB 1xr4 chain A domain 2 Region: 220 - 471 Aligned: 238 Modelled: 248 Confidence: 100.0% Identity: 22% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 2g39 chain A domain 1 Region: 2 - 219 Aligned: 213 Modelled: 218 Confidence: 100.0% Identity: 40% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 1ooy chain A domain 1 Region: 228 - 460 Aligned: 199 Modelled: 220 Confidence: 100.0% Identity: 17% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase beta subunit-like Phyre2 PDB 1k6d chain A Region: 4 - 191 Aligned: 180 Modelled: 188 Confidence: 100.0% Identity: 18% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 3cdk chain D Region: 228 - 436 Aligned: 175 Modelled: 196 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis Phyre2 PDB 3cdk chain A Region: 6 - 194 Aligned: 181 Modelled: 189 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis Phyre2 PDB 2ahu chain A domain 2 Region: 4 - 202 Aligned: 199 Modelled: 199 Confidence: 100.0% Identity: 17% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 1ooy chain A domain 2 Region: 6 - 194 Aligned: 181 Modelled: 189 Confidence: 100.0% Identity: 20% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 1poi chain A Region: 5 - 206 Aligned: 192 Modelled: 192 Confidence: 100.0% Identity: 24% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 1 c2nvvF_ 2 c2g39A_ 3 c3gk7A_ 4 c2oasA_ 5 c3eh7A_ 6 c3d3uA_ 7 d2g39a2 8 c1xr4B_ 9 c2hj0A_ 10 c2ahvC_ 11 c1ooyA_ 12 d1xr4a2 13 d2g39a1 14 d1ooya1 15 d1k6da_ 16 c3cdkD_ 17 c3cdkA_ 18 d2ahua2 19 d1ooya2 20 d1poia_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2nvvF_ 100.0 51 PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. 2 c2g39A_ 100.0 45 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:acetyl-coa hydrolase; PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa 3 c3gk7A_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum 4 c2oasA_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. 5 c3eh7A_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 6 c3d3uA_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 7 d2g39a2 100.0 50 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 8 c1xr4B_ 100.0 21 PDB header:hydrolase/transferase Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase; PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium] 9 c2hj0A_ 100.0 18 PDB header:lyase Chain: A: PDB Molecule:putative citrate lyase, alfa subunit; PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target). 10 c2ahvC_ 100.0 19 PDB header:transferase Chain: C: PDB Molecule:putative enzyme ydif; PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1 11 c1ooyA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase, PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart 12 d1xr4a2 100.0 22 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 13 d2g39a1 100.0 40 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 14 d1ooya1 100.0 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 15 d1k6da_ 100.0 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 16 c3cdkD_ 100.0 16 PDB header:transferase Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis 17 c3cdkA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis 18 d2ahua2 100.0 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 19 d1ooya2 100.0 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 20 d1poia_ 100.0 24 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 21 c3rrlC_ not modelled 100.0 16 PDB header:transferase Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a; PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695 22 d2ahua1 not modelled 99.9 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 23 d1poib_ not modelled 99.9 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 24 d1xr4a1 not modelled 99.7 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 25 c2f8mB_ not modelled 97.3 13 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum 26 c1lk5C_ not modelled 96.9 23 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 27 c3hheA_ not modelled 96.8 14 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae 28 c3l7oB_ not modelled 96.8 19 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 29 d1m0sa1 not modelled 96.7 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 30 c1uj6A_ not modelled 96.4 23 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 31 c3kwmC_ not modelled 96.1 16 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 32 c1m0sA_ not modelled 96.0 15 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 33 d1lk5a1 not modelled 95.8 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 34 c1lkzB_ not modelled 95.5 14 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 35 c1xtzA_ not modelled 95.5 14 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes 36 c2pjmA_ not modelled 95.4 14 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 37 d1uj4a1 not modelled 91.3 10 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 38 d1k8kg_ not modelled 55.6 17 Fold:alpha-alpha superhelix Superfamily:Arp2/3 complex 16 kDa subunit ARPC5 Family:Arp2/3 complex 16 kDa subunit ARPC5 39 c1avoA_ not modelled 47.0 21 PDB header:proteasome activator Chain: A: PDB Molecule:11s regulator; PDBTitle: proteasome activator reg(alpha) 40 d1t5oa_ not modelled 45.5 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 41 c1w2wJ_ not modelled 43.3 31 PDB header:isomerase Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 42 c3ecsD_ not modelled 36.2 12 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 43 c2w48D_ not modelled 36.1 5 PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae 44 d3efba1 not modelled 33.7 10 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 45 c3u7jA_ not modelled 30.5 11 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 46 d1vb5a_ not modelled 30.2 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 47 d1t9ka_ not modelled 29.1 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 48 c3iukB_ not modelled 28.7 33 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of putative bacterial protein of unknown function2 (duf885, pf05960.1, ) from arthrobacter aurescens tc1, reveals fold3 similar to that of m32 carboxypeptidases 49 c2wpnA_ not modelled 26.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 50 d1rz3a_ not modelled 25.4 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 51 c3fgxA_ not modelled 25.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:rbstp2171; PDBTitle: structure of uncharacterised protein rbstp2171 from bacillus2 stearothermophilus 52 c3llmB_ not modelled 25.1 22 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase 53 d1soua_ not modelled 24.3 42 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:Methenyltetrahydrofolate synthetase 54 d2gnpa1 not modelled 22.4 11 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 55 c3dwlG_ not modelled 20.1 9 PDB header:structural protein Chain: G: PDB Molecule:actin-related protein 2/3 complex subunit 5; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 56 c3rgwS_ not modelled 19.9 15 PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster 57 d1t3ka_ not modelled 19.8 8 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Cell cycle control phosphatase, catalytic domain 58 d1ig8a2 not modelled 19.1 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 59 c2yvkA_ not modelled 17.8 17 PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis 60 d1qf8a_ not modelled 17.3 30 Fold:Rubredoxin-like Superfamily:Casein kinase II beta subunit Family:Casein kinase II beta subunit 61 d1gmxa_ not modelled 16.3 18 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Single-domain sulfurtransferase 62 c3myrE_ not modelled 15.8 18 PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 63 d1wkca_ not modelled 14.8 29 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:Methenyltetrahydrofolate synthetase 64 d2grea1 not modelled 14.5 41 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 65 c1dbgA_ not modelled 11.9 12 PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b 66 d1yq9a1 not modelled 11.2 30 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 67 c3gxxB_ not modelled 11.1 17 PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b 68 d1frfs_ not modelled 10.9 26 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 69 c3o0yC_ not modelled 10.9 24 PDB header:lipid binding protein Chain: C: PDB Molecule:lipoprotein; PDBTitle: the crystal structure of the putative lipoprotein from colwellia2 psychrerythraea 70 c2jy9A_ not modelled 9.9 50 PDB header:hydrolase Chain: A: PDB Molecule:putative trna hydrolase domain; PDBTitle: nmr structure of putative trna hydrolase domain from2 salmonella typhimurium. northeast structural genomics3 consortium target str220 71 d2p7vb1 not modelled 9.6 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 72 c1h2aS_ not modelled 9.6 21 PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 73 d1wuis1 not modelled 9.6 21 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 74 c2zkrv_ not modelled 9.6 18 PDB header:ribosomal protein/rna Chain: V: PDB Molecule:rna expansion segment es9 part2; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 75 c3do6B_ not modelled 9.5 38 PDB header:ligase Chain: B: PDB Molecule:formate--tetrahydrofolate ligase; PDBTitle: crystal structure of putative formyltetrahydrofolate2 synthetase (tm1766) from thermotoga maritima at 1.85 a3 resolution 76 d1ttya_ not modelled 9.5 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 77 c2jvaA_ not modelled 9.5 50 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein; PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211 78 d1tafb_ not modelled 9.4 29 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 79 d1cc1s_ not modelled 9.4 5 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 80 d1v4sa2 not modelled 9.2 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 81 c3nzeB_ not modelled 9.2 16 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family; PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1. 82 d2coha1 not modelled 9.2 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 83 d1g8fa3 not modelled 9.2 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 84 c3h75A_ not modelled 9.1 15 PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens 85 d1ofla_ not modelled 9.0 12 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Chondroitinase B 86 c2oaq1_ not modelled 9.0 21 PDB header:hydrolase Chain: 1: PDB Molecule:type ii secretion system protein; PDBTitle: crystal structure of the archaeal secretion atpase gspe in complex2 with phosphate 87 d2f0ca1 not modelled 9.0 27 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Lactophage receptor-binding protein head domain 88 c2i9uA_ not modelled 8.9 13 PDB header:hydrolase Chain: A: PDB Molecule:cytosine/guanine deaminase related protein; PDBTitle: crystal structure of guanine deaminase from c. acetobutylicum with2 bound guanine in the active site 89 c2du9A_ not modelled 8.9 18 PDB header:transcription Chain: A: PDB Molecule:predicted transcriptional regulators; PDBTitle: crystal structure of the transcriptional factor from c.glutamicum 90 c2fu2A_ not modelled 8.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein spy2152; PDBTitle: crystal structure of protein spy2152 from streptococcus pyogenes 91 c1zljE_ not modelled 8.2 20 PDB header:transcription Chain: E: PDB Molecule:dormancy survival regulator; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain 92 d1w53a_ not modelled 8.1 11 Fold:KaiA/RbsU domain Superfamily:KaiA/RbsU domain Family:Phosphoserine phosphatase RsbU, N-terminal domain 93 c1ydmC_ not modelled 8.1 18 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein yqgn; PDBTitle: x-ray structure of northeast structural genomics target sr44 94 c3smaD_ not modelled 8.0 12 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 95 d1vqov1 not modelled 7.8 14 Fold:Long alpha-hairpin Superfamily:Ribosomal protein L29 (L29p) Family:Ribosomal protein L29 (L29p) 96 d1eg7a_ not modelled 7.7 38 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 97 d1vcca_ not modelled 7.7 33 Fold:DNA topoisomerase I domain Superfamily:DNA topoisomerase I domain Family:Vaccinia DNA topoisomerase I, 9 kDa N-terminal fragment 98 c3lzkC_ not modelled 7.4 12 PDB header:hydrolase Chain: C: PDB Molecule:fumarylacetoacetate hydrolase family protein; PDBTitle: the crystal structure of a probably aromatic amino acid2 degradation protein from sinorhizobium meliloti 1021 99 c1wv9B_ not modelled 7.2 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:rhodanese homolog tt1651; PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0